Wall clock time and date at job start Tue Mar 31 2020 06:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.80838 * 2 1 4 4 C 1.55005 * 110.90596 * 123.62595 * 2 1 3 5 5 O 1.44382 * 103.48856 * 155.21805 * 4 2 1 6 6 C 1.43748 * 106.97782 * 319.94165 * 5 4 2 7 7 H 1.09005 * 109.87593 * 266.94455 * 6 5 4 8 8 C 1.50690 * 109.88136 * 145.93936 * 6 5 4 9 9 O 1.21279 * 119.99973 * 356.44753 * 8 6 5 10 10 N 1.34780 * 120.00291 * 176.45190 * 8 6 5 11 11 C 1.46494 * 120.00353 * 179.97438 * 10 8 6 12 12 C 1.50704 * 109.47200 * 180.02562 * 11 10 8 13 13 C 1.29454 * 117.69178 * 94.98267 * 12 11 10 14 14 C 1.49925 * 123.62918 * 180.62035 * 13 12 11 15 15 N 1.47003 * 109.38596 * 349.43005 * 14 13 12 16 16 C 1.36944 * 121.37678 * 222.82997 * 15 14 13 17 17 H 1.07998 * 120.00262 * 151.65949 * 16 15 14 18 18 C 1.38816 * 119.99527 * 331.66639 * 16 15 14 19 19 N 1.31618 * 119.99909 * 140.71878 * 18 16 15 20 20 Si 1.86795 * 119.99919 * 320.71415 * 18 16 15 21 21 H 1.48503 * 109.47072 * 270.00495 * 20 18 16 22 22 H 1.48502 * 109.47155 * 30.00573 * 20 18 16 23 23 H 1.48503 * 109.47141 * 150.00438 * 20 18 16 24 24 C 1.47338 * 117.25436 * 42.56109 * 15 14 13 25 25 C 1.49972 * 117.69313 * 275.00107 * 12 11 10 26 26 C 1.54099 * 107.29413 * 26.50911 * 6 5 4 27 27 H 1.09006 * 109.46588 * 297.83196 * 1 2 3 28 28 H 1.08999 * 109.47076 * 57.82399 * 1 2 3 29 29 H 1.09002 * 109.47348 * 177.83067 * 1 2 3 30 30 H 1.09004 * 110.61549 * 36.71927 * 4 2 1 31 31 H 1.09001 * 110.61525 * 273.71726 * 4 2 1 32 32 H 0.97004 * 119.99480 * 359.97438 * 10 8 6 33 33 H 1.09008 * 109.46726 * 60.00492 * 11 10 8 34 34 H 1.08999 * 109.47240 * 300.00592 * 11 10 8 35 35 H 1.07995 * 118.17401 * 0.87833 * 13 12 11 36 36 H 1.09001 * 109.50316 * 229.40227 * 14 13 12 37 37 H 1.08994 * 109.31707 * 109.34757 * 14 13 12 38 38 H 0.96997 * 120.00027 * 356.51084 * 19 18 16 39 39 H 1.08997 * 109.77730 * 58.07557 * 24 15 14 40 40 H 1.08994 * 109.78440 * 178.89227 * 24 15 14 41 41 H 1.08998 * 109.31288 * 40.72328 * 25 12 11 42 42 H 1.08993 * 109.31923 * 281.29209 * 25 12 11 43 43 H 1.09004 * 110.48677 * 116.64745 * 26 6 5 44 44 H 1.09000 * 110.49529 * 239.29647 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 6 2.0831 -0.8019 1.2057 5 8 3.3941 -1.2142 0.7630 6 6 3.2718 -1.5886 -0.6195 7 1 3.0850 -2.6596 -0.6983 8 6 4.5349 -1.2330 -1.3603 9 8 5.4312 -0.6514 -0.7865 10 7 4.6685 -1.5611 -2.6607 11 6 5.8962 -1.2149 -3.3811 12 6 5.7921 -1.6889 -4.8079 13 6 5.3832 -0.8400 -5.6955 14 6 5.2177 -1.1724 -7.1481 15 7 5.8215 -2.4848 -7.4202 16 6 6.5843 -2.7010 -8.5368 17 1 7.3648 -3.4473 -8.5213 18 6 6.3543 -1.9608 -9.6884 19 7 7.3686 -1.5447 -10.4167 20 14 4.6054 -1.5555 -10.2044 21 1 4.0890 -2.6298 -11.0900 22 1 3.7450 -1.4517 -8.9985 23 1 4.5919 -0.2626 -10.9348 24 6 5.5771 -3.5564 -6.4390 25 6 6.1692 -3.1110 -5.0991 26 6 2.0824 -0.8019 -1.2036 27 1 -0.3633 0.4798 0.9089 28 1 -0.3633 0.5473 -0.8698 29 1 -0.3634 -1.0269 -0.0389 30 1 1.4561 -1.6699 1.4094 31 1 2.1583 -0.1658 2.0877 32 1 3.9517 -2.0265 -3.1196 33 1 6.7479 -1.6955 -2.8995 34 1 6.0332 -0.1337 -3.3669 35 1 5.1523 0.1642 -5.3724 36 1 5.7106 -0.4121 -7.7539 37 1 4.1559 -1.2022 -7.3924 38 1 8.2777 -1.7114 -10.1224 39 1 4.5050 -3.7210 -6.3319 40 1 6.0610 -4.4758 -6.7686 41 1 5.7895 -3.7544 -4.3055 42 1 7.2552 -3.1951 -5.1391 43 1 2.4209 -0.1261 -1.9891 44 1 1.3245 -1.4849 -1.5871 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000972079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:49 Heat of formation + Delta-G solvation = -67.943193 kcal Electronic energy + Delta-G solvation = -23753.634517 eV Core-core repulsion = 20284.794929 eV Total energy + Delta-G solvation = -3468.839588 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.47742 -39.95966 -39.19691 -36.50141 -34.80899 -34.46872 -33.07302 -31.86587 -31.29055 -28.41569 -27.20622 -25.70402 -24.80584 -24.17889 -22.69686 -21.76054 -21.35673 -20.07612 -18.95948 -17.83743 -17.51308 -17.12663 -16.89018 -16.35825 -16.21086 -15.91513 -15.55634 -15.49528 -15.24868 -14.89374 -14.72750 -14.50584 -14.27027 -13.77811 -13.76149 -13.60143 -13.15666 -13.08540 -12.79149 -12.70759 -12.43204 -12.28646 -12.15728 -11.81164 -11.78332 -11.69588 -11.40561 -11.34823 -11.14481 -10.60116 -10.39402 -10.18523 -9.76441 -9.04563 -8.57828 -5.41930 1.05047 1.50030 1.54212 1.59185 1.78802 2.10851 2.60999 2.92858 3.01707 3.43316 3.44505 3.68338 3.77049 3.80818 3.88542 3.89057 4.22243 4.31362 4.36525 4.43752 4.53628 4.56404 4.65135 4.66817 4.68296 4.76661 4.80743 4.81150 4.90053 4.92459 4.98263 5.04776 5.09061 5.23019 5.27367 5.33075 5.37180 5.64965 5.77100 5.84945 6.01456 6.26086 6.50099 6.90898 7.16093 7.63307 8.17969 8.76448 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025368 B = 0.003138 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.497002 B = 8920.188540 C = 9551.373017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.125 4.125 3 H 0.072 0.928 4 C 0.043 3.957 5 O -0.386 6.386 6 C 0.062 3.938 7 H 0.122 0.878 8 C 0.507 3.493 9 O -0.579 6.579 10 N -0.705 5.705 11 C 0.167 3.833 12 C -0.134 4.134 13 C -0.138 4.138 14 C 0.156 3.844 15 N -0.615 5.615 16 C -0.356 4.356 17 H 0.024 0.976 18 C -0.046 4.046 19 N -0.930 5.930 20 Si 1.066 2.934 21 H -0.294 1.294 22 H -0.233 1.233 23 H -0.299 1.299 24 C 0.137 3.863 25 C -0.088 4.088 26 C -0.139 4.139 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.417 0.583 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.124 0.876 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.252 0.748 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.092 0.908 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.060 0.247 21.847 28.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 H 0.091 0.909 4 C -0.033 4.033 5 O -0.305 6.305 6 C 0.001 3.999 7 H 0.139 0.861 8 C 0.294 3.706 9 O -0.458 6.458 10 N -0.358 5.358 11 C 0.043 3.957 12 C -0.135 4.135 13 C -0.158 4.158 14 C 0.031 3.969 15 N -0.340 5.340 16 C -0.485 4.485 17 H 0.042 0.958 18 C -0.245 4.245 19 N -0.568 5.568 20 Si 0.890 3.110 21 H -0.222 1.222 22 H -0.158 1.158 23 H -0.226 1.226 24 C 0.012 3.988 25 C -0.126 4.126 26 C -0.177 4.177 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.117 0.883 32 H 0.254 0.746 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.142 0.858 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.084 1.352 21.221 27.914 hybrid contribution 1.598 -0.900 0.330 1.864 sum -16.486 0.452 21.551 27.137 Atomic orbital electron populations 1.21703 0.91594 1.03244 1.02876 1.22728 0.98221 0.99510 0.93909 0.90915 1.23963 0.82739 0.98798 0.97826 1.88978 1.31621 1.86593 1.23301 1.22787 0.92150 1.01867 0.83063 0.86059 1.21160 0.89106 0.78230 0.82130 1.90697 1.43745 1.42852 1.68500 1.45889 1.19979 1.59982 1.09977 1.20218 0.87171 0.99529 0.88737 1.20567 1.02690 0.96724 0.93501 1.22716 0.98274 0.99412 0.95378 1.20287 0.97099 0.86940 0.92539 1.44452 1.60244 1.06476 1.22832 1.19754 1.11793 1.24789 0.92187 0.95780 1.27286 1.07185 0.96590 0.93455 1.71032 0.99758 1.40678 1.45375 0.83978 0.73950 0.75508 0.77517 1.22210 1.15762 1.22619 1.21211 0.98215 0.90876 0.88522 1.20697 1.00124 0.93402 0.98399 1.23091 0.96114 0.99733 0.98771 0.91505 0.91767 0.90954 0.89576 0.88278 0.74644 0.91951 0.91876 0.85827 0.93206 0.92452 0.93873 0.93238 0.93141 0.88973 0.93085 0.90533 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.19 71.98 0.66 -0.26 16 2 C -0.12 -1.46 3.72 -9.49 -0.04 -1.50 16 3 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 4 C 0.04 0.58 7.18 72.67 0.52 1.10 16 5 O -0.39 -8.89 10.74 -130.27 -1.40 -10.29 16 6 C 0.06 1.10 3.84 30.22 0.12 1.22 16 7 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 8 C 0.51 12.75 6.94 87.65 0.61 13.35 16 9 O -0.58 -20.79 16.53 15.68 0.26 -20.53 16 10 N -0.70 -14.84 5.53 -466.79 -2.58 -17.42 16 11 C 0.17 4.34 5.66 85.64 0.48 4.83 16 12 C -0.13 -3.89 5.22 -15.14 -0.08 -3.97 16 13 C -0.14 -4.35 9.46 26.98 0.26 -4.09 16 14 C 0.16 6.23 4.69 85.30 0.40 6.63 16 15 N -0.61 -28.19 2.70 -704.12 -1.90 -30.09 16 16 C -0.36 -20.00 9.72 84.03 0.82 -19.19 16 17 H 0.02 1.51 8.06 -2.91 -0.02 1.49 16 18 C -0.05 -2.65 4.77 84.86 0.40 -2.25 16 19 N -0.93 -57.98 13.70 21.65 0.30 -57.69 16 20 Si 1.07 49.33 27.45 68.60 1.88 51.22 16 21 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 22 H -0.23 -9.26 4.81 99.48 0.48 -8.78 16 23 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 24 C 0.14 4.99 6.58 86.26 0.57 5.55 16 25 C -0.09 -2.66 5.95 29.66 0.18 -2.48 16 26 C -0.14 -1.65 6.20 31.59 0.20 -1.46 16 27 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.33 8.10 -2.39 -0.02 0.31 16 30 H 0.09 0.79 8.05 -2.38 -0.02 0.77 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.42 6.38 8.46 -92.71 -0.78 5.59 16 33 H 0.06 1.75 8.11 -2.38 -0.02 1.73 16 34 H 0.06 1.75 7.78 -2.39 -0.02 1.73 16 35 H 0.12 3.33 7.73 -2.91 -0.02 3.30 16 36 H 0.05 2.25 6.84 -2.39 -0.02 2.23 16 37 H 0.06 2.16 6.04 -2.39 -0.01 2.15 16 38 H 0.25 15.96 8.73 -92.71 -0.81 15.15 16 39 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 1.93 7.96 -2.39 -0.02 1.91 16 41 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.08 1.05 7.69 -2.38 -0.02 1.03 16 44 H 0.12 0.72 7.83 -2.39 -0.02 0.70 16 Total: -1.00 -75.79 351.34 1.59 -74.20 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -0.07 Total: 13.10 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 5.10 Total: -2.51 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -4.19 Total: -105.19 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -1.14 Total: -30.81 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 1.88 Total: 51.22 kcal Total: -75.79 1.59 -74.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000972079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.257 kcal (2) G-P(sol) polarization free energy of solvation -75.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds