Wall clock time and date at job start Tue Mar 31 2020 07:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08997 * 109.99522 * 2 1 4 4 O 1.44057 * 109.92851 * 238.75408 * 2 1 3 5 5 C 1.44382 * 106.98070 * 214.02681 * 4 2 1 6 6 C 1.54995 * 103.49278 * 40.13202 * 5 4 2 7 7 C 1.54100 * 109.88016 * 121.08817 * 2 1 3 8 8 H 1.09005 * 110.48801 * 240.26688 * 7 2 1 9 9 C 1.50703 * 110.48478 * 2.77392 * 7 2 1 10 10 O 1.21280 * 119.99595 * 83.91809 * 9 7 2 11 11 N 1.34776 * 120.00064 * 263.91096 * 9 7 2 12 12 C 1.46500 * 119.99788 * 180.02562 * 11 9 7 13 13 C 1.50705 * 109.47099 * 180.02562 * 12 11 9 14 14 C 1.29454 * 117.69474 * 94.99627 * 13 12 11 15 15 C 1.50322 * 123.65100 * 180.85800 * 14 13 12 16 16 N 1.47004 * 109.16719 * 349.02460 * 15 14 13 17 17 C 1.36936 * 121.37776 * 222.96805 * 16 15 14 18 18 H 1.08002 * 120.00119 * 158.91325 * 17 16 15 19 19 C 1.38811 * 119.99680 * 338.92095 * 17 16 15 20 20 N 1.31622 * 120.00031 * 343.69091 * 19 17 16 21 21 Si 1.86799 * 119.99985 * 163.69318 * 19 17 16 22 22 H 1.48500 * 109.47102 * 89.99385 * 21 19 17 23 23 H 1.48500 * 109.47355 * 209.99543 * 21 19 17 24 24 H 1.48501 * 109.47261 * 330.00179 * 21 19 17 25 25 C 1.47341 * 117.24962 * 42.94717 * 16 15 14 26 26 C 1.49968 * 117.69157 * 274.73664 * 13 12 11 27 27 H 1.09001 * 109.47599 * 296.77098 * 1 2 3 28 28 H 1.09006 * 109.47452 * 56.77083 * 1 2 3 29 29 H 1.09001 * 109.47361 * 176.76916 * 1 2 3 30 30 H 1.09007 * 110.61451 * 281.63741 * 5 4 2 31 31 H 1.09003 * 110.75411 * 158.70268 * 5 4 2 32 32 H 1.09001 * 110.90733 * 204.77654 * 6 5 4 33 33 H 1.09004 * 110.90196 * 81.17895 * 6 5 4 34 34 H 0.97002 * 120.00001 * 0.02562 * 11 9 7 35 35 H 1.08999 * 109.47497 * 60.00031 * 12 11 9 36 36 H 1.09000 * 109.47028 * 299.99782 * 12 11 9 37 37 H 1.08001 * 118.17564 * 0.88417 * 14 13 12 38 38 H 1.09000 * 109.51957 * 108.92936 * 15 14 13 39 39 H 1.08999 * 109.52196 * 229.11797 * 15 14 13 40 40 H 0.97003 * 119.99828 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.78047 * 57.80627 * 25 16 15 42 42 H 1.08999 * 109.78040 * 178.62053 * 25 16 15 43 43 H 1.08992 * 109.31769 * 281.28737 * 26 13 12 44 44 H 1.09000 * 109.31816 * 40.72038 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0209 -0.7025 -1.1579 5 6 3.2405 -1.3664 -0.7625 6 6 2.9215 -1.8914 0.6605 7 6 2.0539 -0.7483 1.2410 8 1 2.6599 -0.0853 1.8586 9 6 0.9072 -1.3105 2.0411 10 8 0.4214 -2.3790 1.7360 11 7 0.4218 -0.6259 3.0957 12 6 -0.6926 -1.1728 3.8738 13 6 -1.0421 -0.2205 4.9883 14 6 -1.9948 0.6300 4.7764 15 6 -2.4398 1.6510 5.7860 16 7 -1.8215 1.3470 7.0846 17 6 -2.5382 1.4173 8.2493 18 1 -2.1996 0.8831 9.1248 19 6 -3.6999 2.1751 8.3047 20 7 -3.9472 3.0696 7.3714 21 14 -4.9121 1.9254 9.7038 22 1 -4.5636 2.8306 10.8283 23 1 -6.2856 2.2314 9.2294 24 1 -4.8507 0.5155 10.1663 25 6 -0.3990 0.9630 7.0812 26 6 -0.2657 -0.3289 6.2668 27 1 -0.3634 0.4629 0.9175 28 1 -0.3634 0.5632 -0.8597 29 1 -0.3634 -1.0260 -0.0579 30 1 4.0702 -0.6599 -0.7338 31 1 3.4656 -2.1939 -1.4354 32 1 3.8348 -2.0201 1.2415 33 1 2.3573 -2.8228 0.6140 34 1 0.8102 0.2288 3.3395 35 1 -0.4036 -2.1355 4.2953 36 1 -1.5583 -1.3054 3.2248 37 1 -2.4982 0.6043 3.8213 38 1 -2.1316 2.6443 5.4595 39 1 -3.5250 1.6187 5.8827 40 1 -4.7589 3.5994 7.4104 41 1 0.1955 1.7543 6.6246 42 1 -0.0613 0.7897 8.1029 43 1 -0.6462 -1.1676 6.8496 44 1 0.7857 -0.5009 6.0367 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001308925.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:04 Heat of formation + Delta-G solvation = -46.393219 kcal Electronic energy + Delta-G solvation = -24022.847567 eV Core-core repulsion = 20554.942456 eV Total energy + Delta-G solvation = -3467.905111 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.76856 -38.71668 -37.68713 -34.99184 -33.15321 -32.51544 -31.70798 -30.87805 -29.74262 -27.39222 -26.25300 -24.30067 -22.84970 -22.43990 -22.25655 -21.08877 -19.93984 -17.75541 -17.39758 -16.96438 -16.05796 -15.86859 -15.71307 -15.33051 -15.08772 -14.86627 -14.14707 -13.83285 -13.71627 -13.45756 -13.26210 -12.89608 -12.54805 -12.47562 -12.33711 -12.24973 -12.06291 -11.61508 -11.49270 -11.37570 -11.24640 -11.15514 -10.95246 -10.75560 -10.44495 -10.35625 -10.14873 -9.86753 -9.77547 -9.63011 -9.00976 -8.73617 -8.09473 -6.83242 -5.83909 -3.20541 2.52674 2.53744 3.35367 3.42210 3.42678 3.45012 3.56617 4.16857 4.42535 4.45918 4.58810 4.76958 4.90318 4.97134 5.08469 5.13218 5.24691 5.30359 5.34596 5.35530 5.44618 5.53462 5.61021 5.76115 5.77802 5.84276 5.89812 6.01186 6.06993 6.11443 6.26939 6.40426 6.48189 6.60246 6.67121 6.80674 7.11634 7.22499 7.27910 7.52359 7.67744 7.78577 8.18707 8.32116 9.14815 9.77944 10.34035 11.26356 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.037193 B = 0.002936 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.655895 B = 9533.681611 C = 9794.623288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.093 3.907 3 H 0.078 0.922 4 O -0.370 6.370 5 C 0.048 3.952 6 C -0.142 4.142 7 C -0.146 4.146 8 H 0.101 0.899 9 C 0.525 3.475 10 O -0.540 6.540 11 N -0.720 5.720 12 C 0.157 3.843 13 C -0.168 4.168 14 C -0.123 4.123 15 C 0.191 3.809 16 N -0.596 5.596 17 C -0.244 4.244 18 H 0.070 0.930 19 C -0.004 4.004 20 N -0.911 5.911 21 Si 0.905 3.095 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.144 3.856 26 C -0.090 4.090 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.401 0.599 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.040 0.960 39 H 0.099 0.901 40 H 0.254 0.746 41 H 0.023 0.977 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.660 -5.751 -13.096 19.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.034 3.966 3 H 0.096 0.904 4 O -0.290 6.290 5 C -0.028 4.028 6 C -0.180 4.180 7 C -0.167 4.167 8 H 0.120 0.880 9 C 0.311 3.689 10 O -0.418 6.418 11 N -0.371 5.371 12 C 0.035 3.965 13 C -0.169 4.169 14 C -0.144 4.144 15 C 0.066 3.934 16 N -0.319 5.319 17 C -0.374 4.374 18 H 0.088 0.912 19 C -0.201 4.201 20 N -0.557 5.557 21 Si 0.735 3.265 22 H -0.215 1.215 23 H -0.215 1.215 24 H -0.206 1.206 25 C 0.017 3.983 26 C -0.129 4.129 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.236 0.764 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.058 0.942 39 H 0.117 0.883 40 H 0.064 0.936 41 H 0.041 0.959 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.029 -6.426 -13.486 19.822 hybrid contribution -0.392 0.387 1.039 1.176 sum 12.637 -6.039 -12.447 18.737 Atomic orbital electron populations 1.22136 0.93262 1.04110 1.02864 1.22625 0.95690 0.95038 0.83202 0.90370 1.88964 1.39625 1.67632 1.32737 1.23535 0.87626 0.96475 0.95194 1.23159 0.99722 0.99084 0.96054 1.22828 0.96634 0.99318 0.97957 0.88028 1.20104 0.83855 0.84753 0.80167 1.90689 1.60375 1.22125 1.68590 1.46283 1.36162 1.24257 1.30368 1.20463 0.88545 0.96263 0.91272 1.20489 1.01125 0.99542 0.95727 1.23297 0.95085 0.96209 0.99775 1.19832 0.99687 0.91814 0.82018 1.44163 1.04711 1.80168 1.02897 1.19201 1.04751 1.23197 0.90214 0.91228 1.24924 1.00377 0.96413 0.98387 1.70005 1.26676 1.23339 1.35651 0.86250 0.80804 0.77895 0.81583 1.21457 1.21536 1.20565 1.20981 0.86974 0.92759 0.97540 1.20784 0.97088 1.00789 0.94220 0.90791 0.91487 0.90718 0.92054 0.88683 0.89829 0.88518 0.76428 0.91631 0.91667 0.88795 0.94220 0.88282 0.93582 0.95881 0.92482 0.91722 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 8.41 37.15 0.31 -1.55 16 2 C 0.09 0.94 4.07 -26.16 -0.11 0.83 16 3 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 4 O -0.37 -4.25 11.20 -35.23 -0.39 -4.64 16 5 C 0.05 0.40 7.72 38.21 0.29 0.70 16 6 C -0.14 -1.27 6.65 -24.73 -0.16 -1.44 16 7 C -0.15 -1.40 3.42 -90.25 -0.31 -1.70 16 8 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 9 C 0.53 6.64 4.76 -10.98 -0.05 6.59 16 10 O -0.54 -8.84 14.93 5.56 0.08 -8.75 16 11 N -0.72 -8.69 5.17 -61.47 -0.32 -9.01 16 12 C 0.16 2.25 5.66 -5.19 -0.03 2.22 16 13 C -0.17 -2.76 5.22 -100.99 -0.53 -3.28 16 14 C -0.12 -2.25 9.47 -35.78 -0.34 -2.59 16 15 C 0.19 4.39 5.27 -5.10 -0.03 4.37 16 16 N -0.60 -14.49 3.01 -173.56 -0.52 -15.01 16 17 C -0.24 -6.57 9.73 -15.06 -0.15 -6.71 16 18 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 19 C 0.00 -0.10 5.02 -17.43 -0.09 -0.19 16 20 N -0.91 -25.73 10.91 55.49 0.61 -25.12 16 21 Si 0.90 21.43 29.58 -169.99 -5.03 16.40 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 25 C 0.14 2.85 6.59 -3.43 -0.02 2.83 16 26 C -0.09 -1.50 5.95 -28.08 -0.17 -1.66 16 27 H 0.07 0.81 7.20 -51.93 -0.37 0.44 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.01 6.95 -51.93 -0.36 0.65 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 1.08 6.94 -51.93 -0.36 0.72 16 34 H 0.40 4.16 8.46 -40.82 -0.35 3.82 16 35 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 36 H 0.07 0.98 7.78 -51.93 -0.40 0.58 16 37 H 0.09 1.55 7.73 -52.49 -0.41 1.14 16 38 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.10 2.57 6.20 -51.93 -0.32 2.24 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.63 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.10 7.96 -51.93 -0.41 0.69 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 349.05 15.07 5.26 5.26 Total: -1.00 -31.01 349.05 -8.87 -39.88 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -7.18 Total: 2.59 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -1.37 Total: -1.59 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.24 Total: -49.14 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.31 Total: -13.39 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.01 -8.87 -39.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001308925.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.517 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds