Wall clock time and date at job start Tue Mar 31 2020 07:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08997 * 109.99522 * 2 1 4 4 O 1.44057 * 109.92851 * 238.75408 * 2 1 3 5 5 C 1.44382 * 106.98070 * 214.02681 * 4 2 1 6 6 C 1.54995 * 103.49278 * 40.13202 * 5 4 2 7 7 C 1.54100 * 109.88016 * 121.08817 * 2 1 3 8 8 H 1.09005 * 110.48801 * 240.26688 * 7 2 1 9 9 C 1.50703 * 110.48478 * 2.77392 * 7 2 1 10 10 O 1.21280 * 119.99595 * 83.91809 * 9 7 2 11 11 N 1.34776 * 120.00064 * 263.91096 * 9 7 2 12 12 C 1.46500 * 119.99788 * 180.02562 * 11 9 7 13 13 C 1.50705 * 109.47099 * 180.02562 * 12 11 9 14 14 C 1.29454 * 117.69474 * 94.99627 * 13 12 11 15 15 C 1.50322 * 123.65100 * 180.85800 * 14 13 12 16 16 N 1.47004 * 109.16719 * 349.02460 * 15 14 13 17 17 C 1.36936 * 121.37776 * 222.96805 * 16 15 14 18 18 H 1.08002 * 120.00119 * 158.91325 * 17 16 15 19 19 C 1.38811 * 119.99680 * 338.92095 * 17 16 15 20 20 N 1.31622 * 120.00031 * 343.69091 * 19 17 16 21 21 Si 1.86799 * 119.99985 * 163.69318 * 19 17 16 22 22 H 1.48500 * 109.47102 * 89.99385 * 21 19 17 23 23 H 1.48500 * 109.47355 * 209.99543 * 21 19 17 24 24 H 1.48501 * 109.47261 * 330.00179 * 21 19 17 25 25 C 1.47341 * 117.24962 * 42.94717 * 16 15 14 26 26 C 1.49968 * 117.69157 * 274.73664 * 13 12 11 27 27 H 1.09001 * 109.47599 * 296.77098 * 1 2 3 28 28 H 1.09006 * 109.47452 * 56.77083 * 1 2 3 29 29 H 1.09001 * 109.47361 * 176.76916 * 1 2 3 30 30 H 1.09007 * 110.61451 * 281.63741 * 5 4 2 31 31 H 1.09003 * 110.75411 * 158.70268 * 5 4 2 32 32 H 1.09001 * 110.90733 * 204.77654 * 6 5 4 33 33 H 1.09004 * 110.90196 * 81.17895 * 6 5 4 34 34 H 0.97002 * 120.00001 * 0.02562 * 11 9 7 35 35 H 1.08999 * 109.47497 * 60.00031 * 12 11 9 36 36 H 1.09000 * 109.47028 * 299.99782 * 12 11 9 37 37 H 1.08001 * 118.17564 * 0.88417 * 14 13 12 38 38 H 1.09000 * 109.51957 * 108.92936 * 15 14 13 39 39 H 1.08999 * 109.52196 * 229.11797 * 15 14 13 40 40 H 0.97003 * 119.99828 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.78047 * 57.80627 * 25 16 15 42 42 H 1.08999 * 109.78040 * 178.62053 * 25 16 15 43 43 H 1.08992 * 109.31769 * 281.28737 * 26 13 12 44 44 H 1.09000 * 109.31816 * 40.72038 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0209 -0.7025 -1.1579 5 6 3.2405 -1.3664 -0.7625 6 6 2.9215 -1.8914 0.6605 7 6 2.0539 -0.7483 1.2410 8 1 2.6599 -0.0853 1.8586 9 6 0.9072 -1.3105 2.0411 10 8 0.4214 -2.3790 1.7360 11 7 0.4218 -0.6259 3.0957 12 6 -0.6926 -1.1728 3.8738 13 6 -1.0421 -0.2205 4.9883 14 6 -1.9948 0.6300 4.7764 15 6 -2.4398 1.6510 5.7860 16 7 -1.8215 1.3470 7.0846 17 6 -2.5382 1.4173 8.2493 18 1 -2.1996 0.8831 9.1248 19 6 -3.6999 2.1751 8.3047 20 7 -3.9472 3.0696 7.3714 21 14 -4.9121 1.9254 9.7038 22 1 -4.5636 2.8306 10.8283 23 1 -6.2856 2.2314 9.2294 24 1 -4.8507 0.5155 10.1663 25 6 -0.3990 0.9630 7.0812 26 6 -0.2657 -0.3289 6.2668 27 1 -0.3634 0.4629 0.9175 28 1 -0.3634 0.5632 -0.8597 29 1 -0.3634 -1.0260 -0.0579 30 1 4.0702 -0.6599 -0.7338 31 1 3.4656 -2.1939 -1.4354 32 1 3.8348 -2.0201 1.2415 33 1 2.3573 -2.8228 0.6140 34 1 0.8102 0.2288 3.3395 35 1 -0.4036 -2.1355 4.2953 36 1 -1.5583 -1.3054 3.2248 37 1 -2.4982 0.6043 3.8213 38 1 -2.1316 2.6443 5.4595 39 1 -3.5250 1.6187 5.8827 40 1 -4.7589 3.5994 7.4104 41 1 0.1955 1.7543 6.6246 42 1 -0.0613 0.7897 8.1029 43 1 -0.6462 -1.1676 6.8496 44 1 0.7857 -0.5009 6.0367 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001308925.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:03 Heat of formation + Delta-G solvation = -66.870169 kcal Electronic energy + Delta-G solvation = -24023.735514 eV Core-core repulsion = 20554.942456 eV Total energy + Delta-G solvation = -3468.793058 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.66287 -39.80135 -39.05276 -36.41358 -34.59315 -33.56840 -32.52616 -32.40549 -31.39107 -28.77870 -27.30212 -25.84705 -24.41408 -23.38755 -23.12642 -22.60223 -20.90222 -19.48950 -18.37204 -17.87988 -17.26764 -17.07600 -16.90347 -16.64248 -16.12499 -16.03560 -15.60878 -15.36687 -15.18117 -14.74280 -14.55611 -14.00016 -13.86451 -13.59336 -13.38192 -13.30005 -13.28324 -13.08039 -12.86690 -12.77622 -12.57479 -12.26668 -12.20209 -12.08716 -11.98389 -11.85313 -11.69824 -11.29587 -11.04546 -10.68975 -10.59359 -10.09511 -9.63791 -8.78270 -7.88294 -5.26770 1.18259 1.46485 1.48728 1.55954 1.57573 2.37333 2.51255 2.86718 3.28640 3.43002 3.62169 3.63574 3.82696 3.91341 3.96876 4.09619 4.24051 4.29670 4.34959 4.43908 4.53844 4.54624 4.60415 4.65456 4.74300 4.83439 4.85149 4.91773 4.93096 4.95705 5.09962 5.14449 5.16686 5.22418 5.38051 5.43574 5.49932 5.60783 5.77306 5.91310 6.17159 6.33066 6.55557 7.13462 7.22250 7.84383 8.36078 9.19996 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.037193 B = 0.002936 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.655895 B = 9533.681611 C = 9794.623288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.091 3.909 3 H 0.105 0.895 4 O -0.398 6.398 5 C 0.046 3.954 6 C -0.141 4.141 7 C -0.141 4.141 8 H 0.137 0.863 9 C 0.526 3.474 10 O -0.581 6.581 11 N -0.711 5.711 12 C 0.168 3.832 13 C -0.139 4.139 14 C -0.141 4.141 15 C 0.203 3.797 16 N -0.617 5.617 17 C -0.255 4.255 18 H 0.072 0.928 19 C -0.056 4.056 20 N -0.939 5.939 21 Si 0.966 3.034 22 H -0.285 1.285 23 H -0.294 1.294 24 H -0.273 1.273 25 C 0.139 3.861 26 C -0.084 4.084 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.413 0.587 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.111 0.889 38 H 0.014 0.986 39 H 0.061 0.939 40 H 0.249 0.751 41 H 0.031 0.969 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.029 -6.273 -13.259 21.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.033 3.967 3 H 0.122 0.878 4 O -0.318 6.318 5 C -0.030 4.030 6 C -0.179 4.179 7 C -0.162 4.162 8 H 0.155 0.845 9 C 0.314 3.686 10 O -0.461 6.461 11 N -0.362 5.362 12 C 0.044 3.956 13 C -0.139 4.139 14 C -0.162 4.162 15 C 0.078 3.922 16 N -0.341 5.341 17 C -0.385 4.385 18 H 0.089 0.911 19 C -0.251 4.251 20 N -0.587 5.587 21 Si 0.795 3.205 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.198 1.198 25 C 0.013 3.987 26 C -0.122 4.122 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.086 0.914 34 H 0.250 0.750 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.129 0.871 38 H 0.032 0.968 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.443 -6.947 -13.647 21.748 hybrid contribution -1.047 0.507 1.079 1.586 sum 14.396 -6.440 -12.569 20.166 Atomic orbital electron populations 1.22105 0.94771 1.02202 1.03157 1.22753 0.94596 0.96284 0.83101 0.87775 1.88935 1.41116 1.68176 1.33606 1.23743 0.87245 0.97215 0.94795 1.23161 1.00236 0.97534 0.97008 1.22917 0.95636 0.99993 0.97697 0.84465 1.20648 0.84102 0.84057 0.79822 1.90682 1.61767 1.24112 1.69538 1.46109 1.35385 1.24654 1.30053 1.20197 0.89247 0.95568 0.90555 1.20594 0.99299 0.97992 0.96061 1.22945 0.96944 0.96801 0.99495 1.19462 0.97574 0.92315 0.82893 1.44450 1.06679 1.80379 1.02576 1.19534 1.05205 1.22542 0.91175 0.91064 1.25655 1.02036 0.96600 1.00804 1.70166 1.26813 1.24314 1.37376 0.85285 0.78330 0.77946 0.78968 1.21138 1.22036 1.19812 1.21184 0.84598 0.94331 0.98539 1.20726 0.99369 0.98664 0.93489 0.90650 0.91048 0.93662 0.89444 0.87997 0.87210 0.91419 0.74995 0.91513 0.92397 0.87138 0.96813 0.92061 0.94160 0.95088 0.92297 0.92034 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.55 8.41 71.98 0.61 -2.94 16 2 C 0.09 1.61 4.07 30.96 0.13 1.73 16 3 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 4 O -0.40 -8.41 11.20 -148.98 -1.67 -10.08 16 5 C 0.05 0.64 7.72 72.66 0.56 1.20 16 6 C -0.14 -2.17 6.65 31.89 0.21 -1.96 16 7 C -0.14 -2.27 3.42 -10.55 -0.04 -2.30 16 8 H 0.14 1.25 8.14 -2.38 -0.02 1.23 16 9 C 0.53 12.24 4.76 87.66 0.42 12.66 16 10 O -0.58 -18.63 14.93 -3.03 -0.05 -18.68 16 11 N -0.71 -15.24 5.17 -466.78 -2.41 -17.65 16 12 C 0.17 4.45 5.66 85.63 0.48 4.94 16 13 C -0.14 -4.28 5.22 -15.14 -0.08 -4.36 16 14 C -0.14 -5.10 9.47 27.11 0.26 -4.85 16 15 C 0.20 9.55 5.27 85.42 0.45 10.00 16 16 N -0.62 -30.13 3.01 -703.02 -2.12 -32.25 16 17 C -0.25 -13.79 9.73 84.03 0.82 -12.97 16 18 H 0.07 3.74 7.88 -2.91 -0.02 3.71 16 19 C -0.06 -3.12 5.02 84.86 0.43 -2.70 16 20 N -0.94 -54.71 10.91 21.65 0.24 -54.47 16 21 Si 0.97 44.66 29.58 68.60 2.03 46.69 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 C 0.14 5.29 6.59 86.32 0.57 5.86 16 26 C -0.08 -2.57 5.95 29.72 0.18 -2.39 16 27 H 0.07 1.55 7.20 -2.39 -0.02 1.53 16 28 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.04 1.23 6.95 -2.39 -0.02 1.22 16 30 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.46 6.94 -2.39 -0.02 1.44 16 34 H 0.41 7.07 8.46 -92.71 -0.78 6.28 16 35 H 0.07 1.82 8.11 -2.39 -0.02 1.80 16 36 H 0.06 1.67 7.78 -2.39 -0.02 1.65 16 37 H 0.11 3.59 7.73 -2.91 -0.02 3.57 16 38 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.06 3.32 6.20 -2.39 -0.01 3.31 16 40 H 0.25 14.12 8.31 -92.71 -0.77 13.34 16 41 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.06 2.19 7.96 -2.39 -0.02 2.17 16 43 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -69.43 349.05 1.21 -68.22 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.20 Total: 16.29 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 4.99 Total: 1.93 kcal Atomic # 7 Polarization: -100.08 SS G_CDS: -4.30 Total: -104.37 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -1.71 Total: -28.75 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -69.43 1.21 -68.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001308925.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.348 kcal (2) G-P(sol) polarization free energy of solvation -69.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds