Wall clock time and date at job start Tue Mar 31 2020 07:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.41575 * 2 1 4 4 O 1.44775 * 110.48916 * 122.45187 * 2 1 3 5 5 C 1.44430 * 105.29714 * 159.32948 * 4 2 1 6 6 C 1.54477 * 104.80049 * 319.45695 * 5 4 2 7 7 C 1.54473 * 110.37480 * 237.69206 * 2 1 3 8 8 H 1.08998 * 110.51329 * 98.40512 * 7 2 1 9 9 C 1.50699 * 110.51297 * 335.82886 * 7 2 1 10 10 O 1.21274 * 120.00277 * 280.15979 * 9 7 2 11 11 N 1.34784 * 119.99636 * 100.15711 * 9 7 2 12 12 C 1.46506 * 119.99673 * 180.02562 * 11 9 7 13 13 C 1.50700 * 109.47133 * 180.02562 * 12 11 9 14 14 C 1.29456 * 117.69331 * 94.99505 * 13 12 11 15 15 C 1.50321 * 123.64695 * 180.85928 * 14 13 12 16 16 N 1.47000 * 109.22173 * 348.99458 * 15 14 13 17 17 C 1.36936 * 121.37774 * 222.95795 * 16 15 14 18 18 H 1.08003 * 120.00126 * 155.13922 * 17 16 15 19 19 C 1.38813 * 119.99952 * 335.13965 * 17 16 15 20 20 N 1.31617 * 120.00111 * 347.07846 * 19 17 16 21 21 Si 1.86799 * 119.99897 * 167.07131 * 19 17 16 22 22 H 1.48506 * 109.47348 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46802 * 120.00143 * 21 19 17 24 24 H 1.48497 * 109.47655 * 240.00031 * 21 19 17 25 25 C 1.47463 * 117.17538 * 42.91994 * 16 15 14 26 26 C 1.49971 * 117.69222 * 274.98148 * 13 12 11 27 27 H 1.09006 * 109.46795 * 188.20862 * 1 2 3 28 28 H 1.08999 * 109.47401 * 308.20794 * 1 2 3 29 29 H 1.09001 * 109.47530 * 68.21922 * 1 2 3 30 30 H 1.08997 * 110.37479 * 200.62041 * 5 4 2 31 31 H 1.09001 * 110.46388 * 78.33484 * 5 4 2 32 32 H 1.09000 * 110.50817 * 265.32782 * 6 5 4 33 33 H 1.08997 * 110.51240 * 142.62320 * 6 5 4 34 34 H 0.96997 * 120.00152 * 0.02562 * 11 9 7 35 35 H 1.08991 * 109.47035 * 60.00058 * 12 11 9 36 36 H 1.08996 * 109.46934 * 300.00405 * 12 11 9 37 37 H 1.08002 * 118.17569 * 0.88639 * 14 13 12 38 38 H 1.09004 * 109.52161 * 108.93620 * 15 14 13 39 39 H 1.08999 * 109.51999 * 229.05663 * 15 14 13 40 40 H 0.97000 * 120.00211 * 179.97438 * 20 19 17 41 41 H 1.08997 * 109.75304 * 178.64928 * 25 16 15 42 42 H 1.09002 * 109.82617 * 57.88755 * 25 16 15 43 43 H 1.09000 * 109.31301 * 281.28671 * 26 13 12 44 44 H 1.08999 * 109.31423 * 40.71889 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 8 2.0367 -0.7277 1.1444 5 6 3.3911 -1.0894 0.7967 6 6 3.3194 -1.5054 -0.6893 7 6 2.0678 -0.7740 -1.2239 8 1 2.3407 -0.0840 -2.0224 9 6 1.0445 -1.7666 -1.7123 10 8 0.9136 -2.8310 -1.1460 11 7 0.2748 -1.4714 -2.7786 12 6 -0.7204 -2.4362 -3.2531 13 6 -1.4410 -1.8679 -4.4484 14 6 -1.0032 -2.1890 -5.6236 15 6 -1.6079 -1.6848 -6.9042 16 7 -2.8851 -1.0203 -6.6075 17 6 -3.9919 -1.2220 -7.3882 18 1 -4.9788 -1.0793 -6.9732 19 6 -3.8455 -1.6099 -8.7130 20 7 -2.6661 -1.5394 -9.2929 21 14 -5.3224 -2.2322 -9.6726 22 1 -6.5236 -2.2140 -8.7995 23 1 -5.5530 -1.3560 -10.8493 24 1 -5.0651 -3.6206 -10.1323 25 6 -2.9237 -0.1286 -5.4337 26 6 -2.6150 -0.9704 -4.1926 27 1 -0.3633 -1.0172 0.1467 28 1 -0.3634 0.6356 0.8075 29 1 -0.3634 0.3813 -0.9543 30 1 3.7297 -1.9252 1.4089 31 1 4.0572 -0.2354 0.9200 32 1 3.1980 -2.5849 -0.7782 33 1 4.2113 -1.1753 -1.2218 34 1 0.3797 -0.6203 -3.2318 35 1 -1.4381 -2.6386 -2.4582 36 1 -0.2216 -3.3629 -3.5368 37 1 -0.1566 -2.8565 -5.6875 38 1 -0.9276 -0.9738 -7.3730 39 1 -1.7813 -2.5226 -7.5796 40 1 -2.5637 -1.8108 -10.2185 41 1 -3.9148 0.3155 -5.3409 42 1 -2.1762 0.6573 -5.5417 43 1 -3.4853 -1.5775 -3.9431 44 1 -2.3881 -0.3095 -3.3561 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001308926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:07 Heat of formation + Delta-G solvation = -47.943045 kcal Electronic energy + Delta-G solvation = -24043.241217 eV Core-core repulsion = 20575.268900 eV Total energy + Delta-G solvation = -3467.972317 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.71372 -38.64692 -37.63850 -34.95169 -33.14409 -32.47960 -31.74714 -30.84549 -29.75838 -27.39673 -26.28708 -24.29186 -22.81735 -22.38074 -22.20463 -21.07664 -19.97169 -17.79141 -17.48119 -16.77537 -15.99700 -15.81865 -15.71457 -15.34202 -15.03234 -14.93313 -14.10574 -13.79713 -13.74390 -13.45380 -13.24287 -12.83185 -12.59799 -12.48007 -12.28944 -12.22244 -12.02417 -11.60032 -11.51771 -11.40301 -11.26666 -11.18372 -10.93506 -10.79351 -10.43265 -10.32063 -10.10960 -9.87771 -9.78436 -9.61283 -8.98088 -8.73818 -8.09468 -6.78029 -5.83704 -3.24312 2.55247 2.57319 3.34923 3.42700 3.44563 3.46488 3.60439 4.21010 4.41100 4.45416 4.61370 4.78453 4.87852 5.05209 5.05917 5.13308 5.19354 5.31164 5.31883 5.36933 5.50474 5.53904 5.58160 5.68211 5.79373 5.81685 5.91183 5.98362 6.02900 6.12750 6.28913 6.42639 6.50533 6.57053 6.69060 6.82091 7.12766 7.22588 7.28789 7.56114 7.69411 7.78842 8.23695 8.34286 9.15590 9.77490 10.35674 11.26600 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.040443 B = 0.002910 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.165429 B = 9618.125272 C = 9856.484637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.090 3.910 3 H 0.080 0.920 4 O -0.365 6.365 5 C 0.049 3.951 6 C -0.142 4.142 7 C -0.145 4.145 8 H 0.102 0.898 9 C 0.523 3.477 10 O -0.538 6.538 11 N -0.720 5.720 12 C 0.157 3.843 13 C -0.167 4.167 14 C -0.124 4.124 15 C 0.194 3.806 16 N -0.596 5.596 17 C -0.245 4.245 18 H 0.069 0.931 19 C -0.002 4.002 20 N -0.911 5.911 21 Si 0.906 3.094 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.144 3.856 26 C -0.090 4.090 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.401 0.599 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.041 0.959 39 H 0.095 0.905 40 H 0.254 0.746 41 H 0.057 0.943 42 H 0.023 0.977 43 H 0.064 0.936 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.469 3.995 15.808 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.032 3.968 3 H 0.098 0.902 4 O -0.284 6.284 5 C -0.028 4.028 6 C -0.180 4.180 7 C -0.166 4.166 8 H 0.120 0.880 9 C 0.309 3.691 10 O -0.415 6.415 11 N -0.371 5.371 12 C 0.035 3.965 13 C -0.168 4.168 14 C -0.145 4.145 15 C 0.069 3.931 16 N -0.319 5.319 17 C -0.374 4.374 18 H 0.087 0.913 19 C -0.199 4.199 20 N -0.557 5.557 21 Si 0.736 3.264 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.017 3.983 26 C -0.129 4.129 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.235 0.765 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.059 0.941 39 H 0.113 0.887 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.041 0.959 43 H 0.082 0.918 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.244 3.116 16.229 19.988 hybrid contribution -0.419 0.045 -1.089 1.168 sum 10.825 3.161 15.140 18.878 Atomic orbital electron populations 1.21953 0.92750 1.03913 1.02888 1.22904 0.95787 0.94699 0.83448 0.90232 1.89240 1.27037 1.74401 1.37749 1.23361 0.84671 0.99833 0.94971 1.22939 0.96094 1.02755 0.96171 1.22809 0.95881 0.97914 1.00038 0.87978 1.20168 0.81641 0.87510 0.79806 1.90697 1.69159 1.25012 1.56628 1.46282 1.38168 1.21369 1.31296 1.20451 0.89656 0.91097 0.95321 1.20491 0.99484 1.03560 0.93239 1.23304 0.97740 0.96517 0.96912 1.19775 0.86190 0.97129 0.90043 1.44150 1.08910 1.49442 1.29389 1.19234 0.85925 1.41422 0.90842 0.91320 1.25028 0.96892 1.01868 0.96140 1.69989 1.22123 1.51488 1.12050 0.86155 0.82100 0.78317 0.79812 1.20294 1.21705 1.21579 1.20971 0.98920 0.91471 0.86916 1.20748 0.95664 0.97422 0.99025 0.91005 0.91421 0.90671 0.88902 0.92234 0.89100 0.89988 0.76506 0.91638 0.91753 0.88837 0.94146 0.88722 0.93630 0.92463 0.95941 0.91765 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 8.56 37.16 0.32 -1.29 16 2 C 0.09 0.88 3.85 -25.96 -0.10 0.78 16 3 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 4 O -0.37 -4.37 11.36 -35.23 -0.40 -4.77 16 5 C 0.05 0.43 7.63 37.93 0.29 0.72 16 6 C -0.14 -1.28 6.59 -25.17 -0.17 -1.45 16 7 C -0.14 -1.40 3.42 -90.21 -0.31 -1.70 16 8 H 0.10 0.72 8.11 -51.93 -0.42 0.30 16 9 C 0.52 6.80 4.78 -10.98 -0.05 6.75 16 10 O -0.54 -9.15 15.75 5.56 0.09 -9.07 16 11 N -0.72 -8.85 5.33 -61.47 -0.33 -9.17 16 12 C 0.16 2.29 5.66 -5.19 -0.03 2.26 16 13 C -0.17 -2.76 5.22 -100.99 -0.53 -3.29 16 14 C -0.12 -2.29 9.47 -35.78 -0.34 -2.62 16 15 C 0.19 4.46 5.21 -5.10 -0.03 4.43 16 16 N -0.60 -14.52 3.01 -173.58 -0.52 -15.04 16 17 C -0.24 -6.59 9.72 -15.06 -0.15 -6.74 16 18 H 0.07 1.82 7.86 -52.48 -0.41 1.41 16 19 C 0.00 -0.04 5.06 -17.43 -0.09 -0.13 16 20 N -0.91 -25.78 10.98 55.49 0.61 -25.17 16 21 Si 0.91 21.46 29.57 -169.99 -5.03 16.43 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.14 2.86 6.58 -3.46 -0.02 2.83 16 26 C -0.09 -1.49 5.95 -28.18 -0.17 -1.66 16 27 H 0.07 0.93 7.19 -51.93 -0.37 0.55 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.68 7.83 -51.93 -0.41 0.28 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 1.01 7.05 -51.93 -0.37 0.65 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.40 4.21 8.44 -40.82 -0.34 3.86 16 35 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 36 H 0.06 0.99 7.78 -51.93 -0.40 0.59 16 37 H 0.09 1.56 7.73 -52.49 -0.41 1.15 16 38 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.09 2.46 6.39 -51.93 -0.33 2.12 16 40 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.06 1.11 7.97 -51.93 -0.41 0.70 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 351.07 15.07 5.29 5.29 Total: -1.00 -31.57 351.07 -8.90 -40.46 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.24 Total: 2.13 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -1.37 Total: -1.11 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: -0.24 Total: -49.38 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.31 Total: -13.83 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.57 -8.90 -40.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001308926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.481 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds