Wall clock time and date at job start Tue Mar 31 2020 07:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.41575 * 2 1 4 4 O 1.44775 * 110.48916 * 122.45187 * 2 1 3 5 5 C 1.44430 * 105.29714 * 159.32948 * 4 2 1 6 6 C 1.54477 * 104.80049 * 319.45695 * 5 4 2 7 7 C 1.54473 * 110.37480 * 237.69206 * 2 1 3 8 8 H 1.08998 * 110.51329 * 98.40512 * 7 2 1 9 9 C 1.50699 * 110.51297 * 335.82886 * 7 2 1 10 10 O 1.21274 * 120.00277 * 280.15979 * 9 7 2 11 11 N 1.34784 * 119.99636 * 100.15711 * 9 7 2 12 12 C 1.46506 * 119.99673 * 180.02562 * 11 9 7 13 13 C 1.50700 * 109.47133 * 180.02562 * 12 11 9 14 14 C 1.29456 * 117.69331 * 94.99505 * 13 12 11 15 15 C 1.50321 * 123.64695 * 180.85928 * 14 13 12 16 16 N 1.47000 * 109.22173 * 348.99458 * 15 14 13 17 17 C 1.36936 * 121.37774 * 222.95795 * 16 15 14 18 18 H 1.08003 * 120.00126 * 155.13922 * 17 16 15 19 19 C 1.38813 * 119.99952 * 335.13965 * 17 16 15 20 20 N 1.31617 * 120.00111 * 347.07846 * 19 17 16 21 21 Si 1.86799 * 119.99897 * 167.07131 * 19 17 16 22 22 H 1.48506 * 109.47348 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46802 * 120.00143 * 21 19 17 24 24 H 1.48497 * 109.47655 * 240.00031 * 21 19 17 25 25 C 1.47463 * 117.17538 * 42.91994 * 16 15 14 26 26 C 1.49971 * 117.69222 * 274.98148 * 13 12 11 27 27 H 1.09006 * 109.46795 * 188.20862 * 1 2 3 28 28 H 1.08999 * 109.47401 * 308.20794 * 1 2 3 29 29 H 1.09001 * 109.47530 * 68.21922 * 1 2 3 30 30 H 1.08997 * 110.37479 * 200.62041 * 5 4 2 31 31 H 1.09001 * 110.46388 * 78.33484 * 5 4 2 32 32 H 1.09000 * 110.50817 * 265.32782 * 6 5 4 33 33 H 1.08997 * 110.51240 * 142.62320 * 6 5 4 34 34 H 0.96997 * 120.00152 * 0.02562 * 11 9 7 35 35 H 1.08991 * 109.47035 * 60.00058 * 12 11 9 36 36 H 1.08996 * 109.46934 * 300.00405 * 12 11 9 37 37 H 1.08002 * 118.17569 * 0.88639 * 14 13 12 38 38 H 1.09004 * 109.52161 * 108.93620 * 15 14 13 39 39 H 1.08999 * 109.51999 * 229.05663 * 15 14 13 40 40 H 0.97000 * 120.00211 * 179.97438 * 20 19 17 41 41 H 1.08997 * 109.75304 * 178.64928 * 25 16 15 42 42 H 1.09002 * 109.82617 * 57.88755 * 25 16 15 43 43 H 1.09000 * 109.31301 * 281.28671 * 26 13 12 44 44 H 1.08999 * 109.31423 * 40.71889 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 8 2.0367 -0.7277 1.1444 5 6 3.3911 -1.0894 0.7967 6 6 3.3194 -1.5054 -0.6893 7 6 2.0678 -0.7740 -1.2239 8 1 2.3407 -0.0840 -2.0224 9 6 1.0445 -1.7666 -1.7123 10 8 0.9136 -2.8310 -1.1460 11 7 0.2748 -1.4714 -2.7786 12 6 -0.7204 -2.4362 -3.2531 13 6 -1.4410 -1.8679 -4.4484 14 6 -1.0032 -2.1890 -5.6236 15 6 -1.6079 -1.6848 -6.9042 16 7 -2.8851 -1.0203 -6.6075 17 6 -3.9919 -1.2220 -7.3882 18 1 -4.9788 -1.0793 -6.9732 19 6 -3.8455 -1.6099 -8.7130 20 7 -2.6661 -1.5394 -9.2929 21 14 -5.3224 -2.2322 -9.6726 22 1 -6.5236 -2.2140 -8.7995 23 1 -5.5530 -1.3560 -10.8493 24 1 -5.0651 -3.6206 -10.1323 25 6 -2.9237 -0.1286 -5.4337 26 6 -2.6150 -0.9704 -4.1926 27 1 -0.3633 -1.0172 0.1467 28 1 -0.3634 0.6356 0.8075 29 1 -0.3634 0.3813 -0.9543 30 1 3.7297 -1.9252 1.4089 31 1 4.0572 -0.2354 0.9200 32 1 3.1980 -2.5849 -0.7782 33 1 4.2113 -1.1753 -1.2218 34 1 0.3797 -0.6203 -3.2318 35 1 -1.4381 -2.6386 -2.4582 36 1 -0.2216 -3.3629 -3.5368 37 1 -0.1566 -2.8565 -5.6875 38 1 -0.9276 -0.9738 -7.3730 39 1 -1.7813 -2.5226 -7.5796 40 1 -2.5637 -1.8108 -10.2185 41 1 -3.9148 0.3155 -5.3409 42 1 -2.1762 0.6573 -5.5417 43 1 -3.4853 -1.5775 -3.9431 44 1 -2.3881 -0.3095 -3.3561 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001308926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:06 Heat of formation + Delta-G solvation = -69.130755 kcal Electronic energy + Delta-G solvation = -24044.159985 eV Core-core repulsion = 20575.268900 eV Total energy + Delta-G solvation = -3468.891085 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.61428 -39.76945 -38.99711 -36.39442 -34.59658 -33.53330 -32.53537 -32.37296 -31.41598 -28.77804 -27.32619 -25.85127 -24.39449 -23.38398 -23.03018 -22.57972 -20.93879 -19.49154 -18.50386 -17.71855 -17.29938 -16.99762 -16.95345 -16.48665 -16.13605 -16.07645 -15.66534 -15.26846 -15.18167 -14.88421 -14.42085 -14.03885 -13.86887 -13.54651 -13.38876 -13.27628 -13.23156 -12.94000 -12.87871 -12.77448 -12.61798 -12.26892 -12.19792 -12.08281 -11.96328 -11.90597 -11.71421 -11.27494 -10.98230 -10.71672 -10.63984 -10.09415 -9.64379 -8.73812 -7.88507 -5.31209 1.18299 1.46036 1.48139 1.57863 1.58600 2.39606 2.50468 2.92231 3.29203 3.47166 3.62469 3.65300 3.83406 3.91748 3.97218 4.13293 4.23066 4.36959 4.37571 4.43779 4.49974 4.53375 4.63894 4.66236 4.74634 4.84143 4.87142 4.91941 4.92285 4.97398 5.10303 5.11958 5.19069 5.22534 5.37622 5.43533 5.49631 5.61283 5.77030 5.89516 6.16829 6.34448 6.57602 7.13821 7.25007 7.83313 8.36966 9.19847 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.040443 B = 0.002910 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.165429 B = 9618.125272 C = 9856.484637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.087 3.913 3 H 0.112 0.888 4 O -0.399 6.399 5 C 0.044 3.956 6 C -0.141 4.141 7 C -0.142 4.142 8 H 0.137 0.863 9 C 0.523 3.477 10 O -0.583 6.583 11 N -0.710 5.710 12 C 0.168 3.832 13 C -0.138 4.138 14 C -0.142 4.142 15 C 0.205 3.795 16 N -0.616 5.616 17 C -0.255 4.255 18 H 0.070 0.930 19 C -0.054 4.054 20 N -0.939 5.939 21 Si 0.968 3.032 22 H -0.268 1.268 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.139 3.861 26 C -0.084 4.084 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.112 0.888 34 H 0.413 0.587 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.111 0.889 38 H 0.015 0.985 39 H 0.057 0.943 40 H 0.249 0.751 41 H 0.058 0.942 42 H 0.031 0.969 43 H 0.060 0.940 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.119 5.413 17.253 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.029 3.971 3 H 0.130 0.870 4 O -0.319 6.319 5 C -0.032 4.032 6 C -0.179 4.179 7 C -0.163 4.163 8 H 0.155 0.845 9 C 0.311 3.689 10 O -0.463 6.463 11 N -0.362 5.362 12 C 0.044 3.956 13 C -0.138 4.138 14 C -0.163 4.163 15 C 0.080 3.920 16 N -0.341 5.341 17 C -0.385 4.385 18 H 0.087 0.913 19 C -0.249 4.249 20 N -0.586 5.586 21 Si 0.796 3.204 22 H -0.192 1.192 23 H -0.218 1.218 24 H -0.219 1.219 25 C 0.014 3.986 26 C -0.122 4.122 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.130 0.870 34 H 0.250 0.750 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.128 0.872 38 H 0.033 0.967 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.079 0.921 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.897 4.570 17.695 21.807 hybrid contribution -0.632 -0.358 -1.449 1.621 sum 11.265 4.213 16.246 20.213 Atomic orbital electron populations 1.21957 0.93537 1.01993 1.03946 1.23120 0.95319 0.95941 0.82698 0.87031 1.89208 1.28660 1.75028 1.38968 1.23548 0.83932 1.01007 0.94708 1.22964 0.97068 1.01052 0.96827 1.22916 0.94782 0.97536 1.01075 0.84482 1.20794 0.81660 0.87455 0.79032 1.90683 1.70441 1.27213 1.57950 1.46109 1.37450 1.21373 1.31243 1.20180 0.89962 0.91277 0.94138 1.20585 0.98443 1.01587 0.93221 1.22955 0.99222 0.98639 0.95442 1.19402 0.85666 0.95266 0.91637 1.44434 1.08584 1.50718 1.30323 1.19543 0.86892 1.40743 0.91317 0.91267 1.25756 0.99269 1.02690 0.97193 1.70147 1.23845 1.52680 1.11971 0.85193 0.79577 0.77235 0.78379 1.19194 1.21843 1.21914 1.21164 0.99413 0.91600 0.86444 1.20692 0.95461 0.97519 0.98564 0.94344 0.90603 0.89357 0.89072 0.89419 0.91899 0.86987 0.75010 0.91758 0.92452 0.87150 0.96711 0.92519 0.94139 0.92316 0.95117 0.92118 0.89132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 8.56 71.98 0.62 -2.24 16 2 C 0.09 1.43 3.85 31.09 0.12 1.55 16 3 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 4 O -0.40 -8.83 11.36 -148.98 -1.69 -10.52 16 5 C 0.04 0.68 7.63 72.48 0.55 1.24 16 6 C -0.14 -2.21 6.59 31.61 0.21 -2.00 16 7 C -0.14 -2.30 3.42 -10.53 -0.04 -2.33 16 8 H 0.14 1.27 8.11 -2.39 -0.02 1.25 16 9 C 0.52 12.64 4.78 87.66 0.42 13.06 16 10 O -0.58 -19.63 15.75 -3.01 -0.05 -19.68 16 11 N -0.71 -15.64 5.33 -466.79 -2.49 -18.12 16 12 C 0.17 4.57 5.66 85.63 0.48 5.06 16 13 C -0.14 -4.29 5.22 -15.14 -0.08 -4.37 16 14 C -0.14 -5.16 9.47 27.10 0.26 -4.90 16 15 C 0.21 9.70 5.21 85.42 0.44 10.15 16 16 N -0.62 -30.22 3.01 -703.07 -2.12 -32.34 16 17 C -0.25 -13.84 9.72 84.03 0.82 -13.02 16 18 H 0.07 3.66 7.86 -2.91 -0.02 3.64 16 19 C -0.05 -3.01 5.06 84.86 0.43 -2.58 16 20 N -0.94 -54.73 10.98 21.65 0.24 -54.49 16 21 Si 0.97 44.69 29.57 68.60 2.03 46.72 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 25 C 0.14 5.33 6.58 86.23 0.57 5.90 16 26 C -0.08 -2.58 5.95 29.65 0.18 -2.41 16 27 H 0.04 0.96 7.19 -2.38 -0.02 0.94 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 1.32 7.83 -2.39 -0.02 1.30 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 1.36 7.05 -2.39 -0.02 1.34 16 33 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.41 7.18 8.44 -92.71 -0.78 6.40 16 35 H 0.06 1.82 8.11 -2.39 -0.02 1.80 16 36 H 0.06 1.69 7.78 -2.39 -0.02 1.67 16 37 H 0.11 3.61 7.73 -2.91 -0.02 3.59 16 38 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.06 3.08 6.39 -2.39 -0.02 3.06 16 40 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 41 H 0.06 2.20 7.97 -2.39 -0.02 2.18 16 42 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -71.02 351.07 1.10 -69.92 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.20 Total: 15.43 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 4.98 Total: 3.09 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -4.37 Total: -104.95 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -1.74 Total: -30.20 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -71.02 1.10 -69.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001308926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.786 kcal (2) G-P(sol) polarization free energy of solvation -71.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds