Wall clock time and date at job start Tue Mar 31 2020 07:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08994 * 109.86890 * 2 1 4 4 O 1.43738 * 109.87760 * 238.83451 * 2 1 3 5 5 C 1.44387 * 106.97809 * 267.08882 * 4 2 1 6 6 C 1.55349 * 103.50099 * 319.91224 * 5 4 2 7 7 C 1.54105 * 109.87493 * 121.00503 * 2 1 3 8 8 H 1.08998 * 110.48906 * 358.71889 * 7 2 1 9 9 C 1.50701 * 110.48289 * 236.20022 * 7 2 1 10 10 O 1.21283 * 119.99960 * 1.85179 * 9 7 2 11 11 N 1.34776 * 120.00069 * 181.84300 * 9 7 2 12 12 C 1.46498 * 120.00251 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.46860 * 180.02562 * 12 11 9 14 14 C 1.29459 * 117.69307 * 94.73945 * 13 12 11 15 15 C 1.50317 * 123.65284 * 180.58254 * 14 13 12 16 16 N 1.46996 * 109.20341 * 349.50273 * 15 14 13 17 17 C 1.36940 * 121.37569 * 222.71561 * 16 15 14 18 18 H 1.07995 * 120.00115 * 155.99497 * 17 16 15 19 19 C 1.38811 * 119.99880 * 335.99998 * 17 16 15 20 20 N 1.31620 * 120.00037 * 344.50656 * 19 17 16 21 21 Si 1.86803 * 120.00056 * 164.50386 * 19 17 16 22 22 H 1.48499 * 109.47002 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46731 * 119.99839 * 21 19 17 24 24 H 1.48496 * 109.47446 * 239.99777 * 21 19 17 25 25 C 1.47341 * 117.25333 * 42.73819 * 16 15 14 26 26 C 1.49967 * 117.69403 * 274.99564 * 13 12 11 27 27 H 1.08994 * 109.47313 * 298.99439 * 1 2 3 28 28 H 1.08998 * 109.46922 * 58.99768 * 1 2 3 29 29 H 1.09002 * 109.47043 * 178.99381 * 1 2 3 30 30 H 1.09000 * 110.61747 * 78.44031 * 5 4 2 31 31 H 1.08996 * 110.62035 * 201.43817 * 5 4 2 32 32 H 1.09005 * 110.95751 * 278.92138 * 6 5 4 33 33 H 1.08994 * 111.00655 * 155.20680 * 6 5 4 34 34 H 0.97004 * 119.99497 * 0.02562 * 11 9 7 35 35 H 1.08997 * 109.46838 * 300.00006 * 12 11 9 36 36 H 1.08990 * 109.47432 * 60.00054 * 12 11 9 37 37 H 1.07999 * 118.17288 * 0.85970 * 14 13 12 38 38 H 1.09001 * 109.67268 * 229.47970 * 15 14 13 39 39 H 1.09002 * 109.33277 * 109.31861 * 15 14 13 40 40 H 0.96997 * 119.99846 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.77976 * 178.62241 * 25 16 15 42 42 H 1.08997 * 109.77509 * 57.81174 * 25 16 15 43 43 H 1.09003 * 109.31639 * 281.28923 * 26 13 12 44 44 H 1.08997 * 109.31391 * 40.91419 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6995 -1.1567 5 6 2.2281 -2.0725 -0.7618 6 6 2.8346 -1.9516 0.6633 7 6 2.0540 -0.7465 1.2422 8 1 1.2237 -1.0905 1.8589 9 6 2.9718 0.1410 2.0427 10 8 3.1725 1.2833 1.6878 11 7 3.5696 -0.3344 3.1532 12 6 4.4614 0.5286 3.9317 13 6 4.9959 -0.2378 5.1141 14 6 6.1460 -0.8180 4.9850 15 6 6.7980 -1.6261 6.0719 16 7 6.0598 -1.4315 7.3281 17 6 6.7128 -1.2495 8.5180 18 1 6.2200 -0.7384 9.3318 19 6 8.0083 -1.7218 8.6780 20 7 8.5001 -2.5958 7.8256 21 14 9.0536 -1.1169 10.1031 22 1 8.2740 -0.1452 10.9114 23 1 9.4430 -2.2691 10.9553 24 1 10.2745 -0.4561 9.5760 25 6 4.5883 -1.4408 7.2544 26 6 4.1552 -0.2796 6.3553 27 1 -0.3633 0.4981 0.8988 28 1 -0.3633 0.5293 -0.8809 29 1 -0.3633 -1.0275 -0.0180 30 1 1.2814 -2.6119 -0.7319 31 1 2.9295 -2.5633 -1.4365 32 1 3.9022 -1.7368 0.6157 33 1 2.6462 -2.8533 1.2459 34 1 3.4092 -1.2481 3.4369 35 1 5.2914 0.8534 3.3044 36 1 3.9087 1.3998 4.2828 37 1 6.6681 -0.7118 4.0456 38 1 7.8302 -1.3010 6.2019 39 1 6.7791 -2.6810 5.7980 40 1 9.4054 -2.9256 7.9373 41 1 4.1681 -1.3115 8.2519 42 1 4.2463 -2.3842 6.8288 43 1 4.2678 0.6585 6.8988 44 1 3.1095 -0.4126 6.0782 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001308928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:10 Heat of formation + Delta-G solvation = -51.228117 kcal Electronic energy + Delta-G solvation = -23793.545638 eV Core-core repulsion = 20325.430870 eV Total energy + Delta-G solvation = -3468.114768 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.67718 -38.82109 -37.71909 -35.02488 -33.20200 -32.52455 -31.49079 -30.84594 -29.77943 -27.66281 -26.45794 -24.23873 -22.83593 -22.50501 -21.76597 -21.09360 -20.15072 -18.04200 -17.61893 -16.69317 -16.17660 -15.84065 -15.68795 -15.13861 -14.95008 -14.67462 -14.10926 -13.89248 -13.69169 -13.61000 -13.46988 -13.06138 -12.97131 -12.43122 -12.27112 -12.21758 -12.00939 -11.72294 -11.61625 -11.43965 -11.23791 -11.14088 -10.96113 -10.79054 -10.46289 -10.33400 -10.01784 -9.88030 -9.82229 -9.64208 -9.04494 -8.73821 -8.12125 -6.80492 -5.85063 -3.24057 2.51452 2.53434 3.34498 3.40468 3.42536 3.44450 3.59310 4.17700 4.42025 4.45031 4.51131 4.80538 4.83903 4.98387 5.10045 5.12387 5.24208 5.26321 5.30049 5.34708 5.40101 5.50065 5.54028 5.66274 5.76478 5.82229 5.88990 5.95691 6.01074 6.10134 6.27129 6.39089 6.47126 6.63943 6.67108 6.80272 7.10432 7.19330 7.25846 7.49767 7.67711 7.76917 8.14954 8.32541 9.14134 9.76725 10.34336 11.25422 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.036410 B = 0.002826 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.826430 B = 9906.181799 C =10139.530929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.080 3.920 3 H 0.117 0.883 4 O -0.369 6.369 5 C 0.046 3.954 6 C -0.146 4.146 7 C -0.143 4.143 8 H 0.110 0.890 9 C 0.519 3.481 10 O -0.542 6.542 11 N -0.717 5.717 12 C 0.156 3.844 13 C -0.167 4.167 14 C -0.123 4.123 15 C 0.194 3.806 16 N -0.595 5.595 17 C -0.246 4.246 18 H 0.069 0.931 19 C -0.001 4.001 20 N -0.909 5.909 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.144 3.856 26 C -0.090 4.090 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.402 0.598 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.041 0.959 40 H 0.254 0.746 41 H 0.057 0.943 42 H 0.022 0.978 43 H 0.065 0.935 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.099 0.274 -13.822 19.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.022 3.978 3 H 0.135 0.865 4 O -0.288 6.288 5 C -0.030 4.030 6 C -0.184 4.184 7 C -0.164 4.164 8 H 0.128 0.872 9 C 0.305 3.695 10 O -0.419 6.419 11 N -0.367 5.367 12 C 0.034 3.966 13 C -0.168 4.168 14 C -0.144 4.144 15 C 0.069 3.931 16 N -0.319 5.319 17 C -0.376 4.376 18 H 0.087 0.913 19 C -0.199 4.199 20 N -0.555 5.555 21 Si 0.735 3.265 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.215 1.215 25 C 0.017 3.983 26 C -0.129 4.129 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.236 0.764 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.040 0.960 43 H 0.083 0.917 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.742 1.138 -14.232 19.816 hybrid contribution 0.535 -0.314 1.082 1.247 sum -13.207 0.823 -13.150 18.655 Atomic orbital electron populations 1.22278 0.95228 1.02333 1.02805 1.22790 0.93795 0.98359 0.82834 0.86494 1.88943 1.86102 1.20549 1.33179 1.23612 0.99835 0.84790 0.94807 1.23222 1.01051 0.97157 0.96964 1.22773 0.98975 0.96499 0.98190 0.87160 1.20267 0.80675 0.87775 0.80804 1.90681 1.63091 1.19042 1.69132 1.46173 1.47586 1.16821 1.26154 1.20479 0.92789 0.92543 0.90790 1.20489 0.97886 1.03094 0.95310 1.23296 0.95344 0.95761 1.00012 1.19759 0.96285 0.95037 0.82012 1.44135 0.99245 1.84642 1.03830 1.19225 0.97070 1.29815 0.91441 0.91288 1.24994 0.99237 0.97241 0.98442 1.70013 1.16268 1.30751 1.38442 0.86179 0.80429 0.78164 0.81762 1.20288 1.21721 1.21549 1.20955 0.86140 0.94095 0.97080 1.20758 0.96489 1.01220 0.94450 0.91422 0.91550 0.92398 0.91940 0.88686 0.89777 0.89128 0.76380 0.91634 0.91538 0.88789 0.88816 0.94150 0.93620 0.92422 0.95965 0.91702 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 9.30 37.16 0.35 -1.04 16 2 C 0.08 0.85 3.71 -26.15 -0.10 0.75 16 3 H 0.12 1.51 6.44 -51.93 -0.33 1.17 16 4 O -0.37 -4.23 11.19 -35.23 -0.39 -4.63 16 5 C 0.05 0.37 7.67 38.40 0.29 0.67 16 6 C -0.15 -1.18 6.69 -24.53 -0.16 -1.34 16 7 C -0.14 -1.35 3.06 -90.24 -0.28 -1.63 16 8 H 0.11 0.81 7.70 -51.93 -0.40 0.41 16 9 C 0.52 6.65 7.03 -10.99 -0.08 6.57 16 10 O -0.54 -9.00 15.26 5.56 0.08 -8.92 16 11 N -0.72 -8.75 5.51 -61.48 -0.34 -9.09 16 12 C 0.16 2.27 5.66 -5.19 -0.03 2.24 16 13 C -0.17 -2.75 5.23 -100.99 -0.53 -3.28 16 14 C -0.12 -2.26 9.47 -35.78 -0.34 -2.60 16 15 C 0.19 4.45 5.22 -5.11 -0.03 4.42 16 16 N -0.60 -14.46 3.01 -173.68 -0.52 -14.99 16 17 C -0.25 -6.61 9.71 -15.06 -0.15 -6.76 16 18 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 19 C 0.00 -0.03 5.01 -17.43 -0.09 -0.12 16 20 N -0.91 -25.70 11.08 55.49 0.61 -25.09 16 21 Si 0.90 21.41 29.58 -169.99 -5.03 16.38 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.14 2.85 6.58 -3.53 -0.02 2.83 16 26 C -0.09 -1.50 5.95 -28.18 -0.17 -1.67 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.41 8.11 -51.93 -0.42 -0.01 16 30 H 0.06 0.41 8.11 -51.93 -0.42 -0.01 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.79 7.87 -51.93 -0.41 0.38 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.40 4.20 8.46 -40.82 -0.35 3.86 16 35 H 0.07 1.00 7.79 -51.93 -0.40 0.60 16 36 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 37 H 0.09 1.56 7.74 -52.49 -0.41 1.15 16 38 H 0.09 2.42 6.41 -51.93 -0.33 2.09 16 39 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 353.24 15.07 5.32 5.32 Total: -1.00 -31.10 353.24 -8.82 -39.92 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.24 Total: 2.03 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -1.32 Total: -0.94 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.25 Total: -49.17 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.31 Total: -13.54 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.10 -8.82 -39.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001308928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.309 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds