Wall clock time and date at job start Tue Mar 31 2020 07:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08994 * 109.86890 * 2 1 4 4 O 1.43738 * 109.87760 * 238.83451 * 2 1 3 5 5 C 1.44387 * 106.97809 * 267.08882 * 4 2 1 6 6 C 1.55349 * 103.50099 * 319.91224 * 5 4 2 7 7 C 1.54105 * 109.87493 * 121.00503 * 2 1 3 8 8 H 1.08998 * 110.48906 * 358.71889 * 7 2 1 9 9 C 1.50701 * 110.48289 * 236.20022 * 7 2 1 10 10 O 1.21283 * 119.99960 * 1.85179 * 9 7 2 11 11 N 1.34776 * 120.00069 * 181.84300 * 9 7 2 12 12 C 1.46498 * 120.00251 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.46860 * 180.02562 * 12 11 9 14 14 C 1.29459 * 117.69307 * 94.73945 * 13 12 11 15 15 C 1.50317 * 123.65284 * 180.58254 * 14 13 12 16 16 N 1.46996 * 109.20341 * 349.50273 * 15 14 13 17 17 C 1.36940 * 121.37569 * 222.71561 * 16 15 14 18 18 H 1.07995 * 120.00115 * 155.99497 * 17 16 15 19 19 C 1.38811 * 119.99880 * 335.99998 * 17 16 15 20 20 N 1.31620 * 120.00037 * 344.50656 * 19 17 16 21 21 Si 1.86803 * 120.00056 * 164.50386 * 19 17 16 22 22 H 1.48499 * 109.47002 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46731 * 119.99839 * 21 19 17 24 24 H 1.48496 * 109.47446 * 239.99777 * 21 19 17 25 25 C 1.47341 * 117.25333 * 42.73819 * 16 15 14 26 26 C 1.49967 * 117.69403 * 274.99564 * 13 12 11 27 27 H 1.08994 * 109.47313 * 298.99439 * 1 2 3 28 28 H 1.08998 * 109.46922 * 58.99768 * 1 2 3 29 29 H 1.09002 * 109.47043 * 178.99381 * 1 2 3 30 30 H 1.09000 * 110.61747 * 78.44031 * 5 4 2 31 31 H 1.08996 * 110.62035 * 201.43817 * 5 4 2 32 32 H 1.09005 * 110.95751 * 278.92138 * 6 5 4 33 33 H 1.08994 * 111.00655 * 155.20680 * 6 5 4 34 34 H 0.97004 * 119.99497 * 0.02562 * 11 9 7 35 35 H 1.08997 * 109.46838 * 300.00006 * 12 11 9 36 36 H 1.08990 * 109.47432 * 60.00054 * 12 11 9 37 37 H 1.07999 * 118.17288 * 0.85970 * 14 13 12 38 38 H 1.09001 * 109.67268 * 229.47970 * 15 14 13 39 39 H 1.09002 * 109.33277 * 109.31861 * 15 14 13 40 40 H 0.96997 * 119.99846 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.77976 * 178.62241 * 25 16 15 42 42 H 1.08997 * 109.77509 * 57.81174 * 25 16 15 43 43 H 1.09003 * 109.31639 * 281.28923 * 26 13 12 44 44 H 1.08997 * 109.31391 * 40.91419 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6995 -1.1567 5 6 2.2281 -2.0725 -0.7618 6 6 2.8346 -1.9516 0.6633 7 6 2.0540 -0.7465 1.2422 8 1 1.2237 -1.0905 1.8589 9 6 2.9718 0.1410 2.0427 10 8 3.1725 1.2833 1.6878 11 7 3.5696 -0.3344 3.1532 12 6 4.4614 0.5286 3.9317 13 6 4.9959 -0.2378 5.1141 14 6 6.1460 -0.8180 4.9850 15 6 6.7980 -1.6261 6.0719 16 7 6.0598 -1.4315 7.3281 17 6 6.7128 -1.2495 8.5180 18 1 6.2200 -0.7384 9.3318 19 6 8.0083 -1.7218 8.6780 20 7 8.5001 -2.5958 7.8256 21 14 9.0536 -1.1169 10.1031 22 1 8.2740 -0.1452 10.9114 23 1 9.4430 -2.2691 10.9553 24 1 10.2745 -0.4561 9.5760 25 6 4.5883 -1.4408 7.2544 26 6 4.1552 -0.2796 6.3553 27 1 -0.3633 0.4981 0.8988 28 1 -0.3633 0.5293 -0.8809 29 1 -0.3633 -1.0275 -0.0180 30 1 1.2814 -2.6119 -0.7319 31 1 2.9295 -2.5633 -1.4365 32 1 3.9022 -1.7368 0.6157 33 1 2.6462 -2.8533 1.2459 34 1 3.4092 -1.2481 3.4369 35 1 5.2914 0.8534 3.3044 36 1 3.9087 1.3998 4.2828 37 1 6.6681 -0.7118 4.0456 38 1 7.8302 -1.3010 6.2019 39 1 6.7791 -2.6810 5.7980 40 1 9.4054 -2.9256 7.9373 41 1 4.1681 -1.3115 8.2519 42 1 4.2463 -2.3842 6.8288 43 1 4.2678 0.6585 6.8988 44 1 3.1095 -0.4126 6.0782 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001308928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:09 Heat of formation + Delta-G solvation = -71.749335 kcal Electronic energy + Delta-G solvation = -23794.435505 eV Core-core repulsion = 20325.430870 eV Total energy + Delta-G solvation = -3469.004635 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.57081 -39.88099 -39.12648 -36.44584 -34.64037 -33.55848 -32.55793 -32.05140 -31.42128 -28.88004 -27.60321 -25.80953 -24.40133 -23.38283 -22.84593 -22.38040 -21.09028 -19.51665 -18.86605 -17.62015 -17.34868 -17.10200 -16.83276 -16.70694 -16.11153 -15.74207 -15.44333 -15.28383 -15.16406 -14.90499 -14.36878 -14.26633 -13.99871 -13.69124 -13.66699 -13.27481 -13.04905 -12.89427 -12.86635 -12.79963 -12.61499 -12.40307 -12.20489 -12.10028 -11.91850 -11.82482 -11.71493 -11.29081 -10.98121 -10.70060 -10.60416 -10.14327 -9.66209 -8.75694 -7.89391 -5.30397 1.16162 1.45769 1.48219 1.54722 1.57852 2.33808 2.50457 2.90829 3.28038 3.46469 3.61207 3.64022 3.79064 3.87013 3.95644 4.14538 4.22766 4.30573 4.42559 4.44166 4.53019 4.62286 4.65278 4.67481 4.73578 4.83153 4.83747 4.91152 4.94391 5.04052 5.09903 5.15217 5.20948 5.27296 5.35482 5.41239 5.47612 5.61255 5.75946 5.95370 6.15256 6.33357 6.51042 7.12999 7.17085 7.83086 8.36259 9.19202 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.036410 B = 0.002826 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.826430 B = 9906.181799 C =10139.530929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.076 3.924 3 H 0.085 0.915 4 O -0.397 6.397 5 C 0.041 3.959 6 C -0.142 4.142 7 C -0.134 4.134 8 H 0.142 0.858 9 C 0.519 3.481 10 O -0.584 6.584 11 N -0.707 5.707 12 C 0.166 3.834 13 C -0.138 4.138 14 C -0.142 4.142 15 C 0.206 3.794 16 N -0.616 5.616 17 C -0.256 4.256 18 H 0.070 0.930 19 C -0.054 4.054 20 N -0.939 5.939 21 Si 0.966 3.034 22 H -0.267 1.267 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.139 3.861 26 C -0.084 4.084 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.414 0.586 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.056 0.944 39 H 0.015 0.985 40 H 0.249 0.751 41 H 0.059 0.941 42 H 0.030 0.970 43 H 0.062 0.938 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.342 0.015 -13.968 21.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.018 3.982 3 H 0.103 0.897 4 O -0.317 6.317 5 C -0.035 4.035 6 C -0.180 4.180 7 C -0.156 4.156 8 H 0.160 0.840 9 C 0.306 3.694 10 O -0.464 6.464 11 N -0.358 5.358 12 C 0.043 3.957 13 C -0.138 4.138 14 C -0.162 4.162 15 C 0.081 3.919 16 N -0.340 5.340 17 C -0.386 4.386 18 H 0.088 0.912 19 C -0.249 4.249 20 N -0.585 5.585 21 Si 0.795 3.205 22 H -0.192 1.192 23 H -0.219 1.219 24 H -0.219 1.219 25 C 0.013 3.987 26 C -0.123 4.123 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.138 0.862 34 H 0.251 0.749 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.128 0.872 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.048 0.952 43 H 0.081 0.919 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.023 0.861 -14.376 21.544 hybrid contribution 1.161 -0.228 1.101 1.616 sum -14.862 0.633 -13.275 19.938 Atomic orbital electron populations 1.22225 0.93250 1.03509 1.03038 1.22760 0.95299 0.96946 0.83231 0.89718 1.88913 1.86465 1.22383 1.33923 1.23842 1.01257 0.83467 0.94885 1.23254 0.99791 0.97588 0.97360 1.22804 0.99164 0.96022 0.97568 0.84041 1.20847 0.80454 0.87556 0.80535 1.90675 1.64544 1.21132 1.70088 1.45993 1.46897 1.17080 1.25838 1.20228 0.93010 0.92522 0.89954 1.20594 0.96709 1.00745 0.95801 1.22943 0.96445 0.97468 0.99371 1.19389 0.94994 0.94420 0.83142 1.44422 1.01273 1.84823 1.03484 1.19540 0.97532 1.29110 0.92378 0.91205 1.25722 1.00438 0.97766 1.00969 1.70163 1.16192 1.32056 1.40134 0.85217 0.78642 0.77567 0.79104 1.19174 1.21882 1.21924 1.21154 0.83571 0.95747 0.98188 1.20702 0.98471 0.99501 0.93597 0.90670 0.91943 0.90633 0.89674 0.87907 0.91482 0.86173 0.74930 0.92405 0.91296 0.87165 0.92611 0.96737 0.94136 0.92260 0.95196 0.91942 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.30 71.99 0.67 -1.62 16 2 C 0.08 1.50 3.71 30.97 0.11 1.61 16 3 H 0.08 2.22 6.44 -2.39 -0.02 2.20 16 4 O -0.40 -8.64 11.19 -148.98 -1.67 -10.31 16 5 C 0.04 0.56 7.67 72.79 0.56 1.12 16 6 C -0.14 -1.88 6.69 32.02 0.21 -1.66 16 7 C -0.13 -2.17 3.06 -10.55 -0.03 -2.21 16 8 H 0.14 1.44 7.70 -2.39 -0.02 1.42 16 9 C 0.52 12.31 7.03 87.66 0.62 12.92 16 10 O -0.58 -19.09 15.26 -3.04 -0.05 -19.14 16 11 N -0.71 -15.35 5.51 -466.80 -2.57 -17.93 16 12 C 0.17 4.44 5.66 85.63 0.48 4.93 16 13 C -0.14 -4.25 5.23 -15.14 -0.08 -4.33 16 14 C -0.14 -5.12 9.47 27.10 0.26 -4.86 16 15 C 0.21 9.67 5.22 85.42 0.45 10.12 16 16 N -0.62 -30.05 3.01 -703.41 -2.12 -32.17 16 17 C -0.26 -13.82 9.71 84.03 0.82 -13.01 16 18 H 0.07 3.68 7.88 -2.91 -0.02 3.65 16 19 C -0.05 -2.99 5.01 84.86 0.43 -2.56 16 20 N -0.94 -54.63 11.08 21.65 0.24 -54.39 16 21 Si 0.97 44.58 29.58 68.60 2.03 46.61 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 25 C 0.14 5.28 6.58 86.25 0.57 5.85 16 26 C -0.08 -2.56 5.95 29.65 0.18 -2.39 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.80 8.11 -2.39 -0.02 0.78 16 30 H 0.09 0.79 8.11 -2.39 -0.02 0.77 16 31 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.13 7.87 -2.38 -0.02 1.11 16 33 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.41 7.15 8.46 -92.71 -0.78 6.37 16 35 H 0.06 1.68 7.79 -2.39 -0.02 1.66 16 36 H 0.07 1.87 8.11 -2.39 -0.02 1.85 16 37 H 0.11 3.59 7.74 -2.91 -0.02 3.57 16 38 H 0.06 3.01 6.41 -2.39 -0.02 3.00 16 39 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 41 H 0.06 2.21 7.96 -2.39 -0.02 2.19 16 42 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -69.60 353.24 1.30 -68.30 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.20 Total: 15.10 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 5.23 Total: 3.92 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -4.45 Total: -104.49 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -1.71 Total: -29.44 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -69.60 1.30 -68.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001308928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.451 kcal (2) G-P(sol) polarization free energy of solvation -69.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds