Wall clock time and date at job start Tue Mar 31 2020 07:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.49021 * 2 1 4 4 O 1.42908 * 109.47962 * 120.02458 * 2 1 3 5 5 C 1.42903 * 114.09618 * 181.14024 * 4 2 1 6 6 C 1.53092 * 109.41878 * 298.84574 * 5 4 2 7 7 C 1.53177 * 109.16368 * 57.60710 * 6 5 4 8 8 C 1.53090 * 109.48448 * 239.96707 * 2 1 3 9 9 H 1.09001 * 109.56751 * 62.47040 * 8 2 1 10 10 C 1.50702 * 109.52402 * 302.31882 * 8 2 1 11 11 O 1.21280 * 119.99841 * 0.30451 * 10 8 2 12 12 N 1.34770 * 119.99988 * 180.31339 * 10 8 2 13 13 C 1.46499 * 120.00224 * 179.97438 * 12 10 8 14 14 H 1.08998 * 115.51541 * 9.58093 * 13 12 10 15 15 C 1.53002 * 117.44568 * 224.23845 * 13 12 10 16 16 H 1.08998 * 119.53766 * 4.11743 * 15 13 12 17 17 C 1.54393 * 118.12275 * 160.80444 * 15 13 12 18 18 N 1.48139 * 104.61317 * 87.19455 * 17 15 13 19 19 C 1.36941 * 127.83855 * 140.41452 * 18 17 15 20 20 H 1.07993 * 120.00173 * 195.61364 * 19 18 17 21 21 C 1.38814 * 119.99555 * 15.61753 * 19 18 17 22 22 N 1.31617 * 120.00379 * 9.10184 * 21 19 18 23 23 Si 1.86801 * 119.99688 * 189.10633 * 21 19 18 24 24 H 1.48501 * 109.47356 * 59.99732 * 23 21 19 25 25 H 1.48499 * 109.47063 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47051 * 299.99933 * 23 21 19 27 27 C 1.48151 * 104.32660 * 320.41275 * 18 17 15 28 28 C 1.52995 * 117.44688 * 154.99650 * 13 12 10 29 29 H 1.09005 * 119.54125 * 354.29273 * 28 13 12 30 30 H 1.08999 * 109.47316 * 299.97333 * 1 2 3 31 31 H 1.09004 * 109.47053 * 59.97508 * 1 2 3 32 32 H 1.09009 * 109.47204 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47647 * 58.83010 * 5 4 2 34 34 H 1.09000 * 109.47713 * 178.84726 * 5 4 2 35 35 H 1.08991 * 109.52064 * 177.51488 * 6 5 4 36 36 H 1.09005 * 109.51790 * 297.63919 * 6 5 4 37 37 H 1.09001 * 109.54217 * 62.88764 * 7 6 5 38 38 H 1.08997 * 109.54084 * 183.15775 * 7 6 5 39 39 H 0.97001 * 120.00501 * 359.97438 * 12 10 8 40 40 H 1.08999 * 110.40718 * 328.41186 * 17 15 13 41 41 H 1.08998 * 110.50273 * 206.02939 * 17 15 13 42 42 H 0.96995 * 120.00218 * 180.02562 * 22 21 19 43 43 H 1.09003 * 110.40392 * 280.80007 * 27 18 17 44 44 H 1.09004 * 110.40528 * 158.37479 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 8 2.0065 -0.6741 1.1665 5 6 3.4307 -0.7093 1.2791 6 6 4.0177 -1.4600 0.0810 7 6 3.5711 -0.7709 -1.2121 8 6 2.0406 -0.7223 -1.2495 9 1 1.7148 -0.1853 -2.1403 10 6 1.4927 -2.1259 -1.2790 11 8 0.7607 -2.5099 -0.3916 12 7 1.8163 -2.9544 -2.2915 13 6 1.2842 -4.3190 -2.3200 14 1 0.5112 -4.5371 -1.5831 15 6 2.2542 -5.4469 -2.6779 16 1 3.3091 -5.2197 -2.8318 17 6 1.8685 -6.8899 -2.2871 18 7 1.0576 -7.3812 -3.4253 19 6 1.0727 -8.6282 -3.9910 20 1 0.6259 -8.7864 -4.9614 21 6 1.6623 -9.6890 -3.3171 22 7 2.0457 -9.5427 -2.0666 23 14 1.9118 -11.3240 -4.1853 24 1 2.7806 -11.1263 -5.3733 25 1 2.5571 -12.2850 -3.2551 26 1 0.5964 -11.8605 -4.6179 27 6 0.2264 -6.2176 -3.8126 28 6 1.1715 -5.0037 -3.6836 29 1 1.3947 -4.4387 -4.5887 30 1 -0.3634 0.5134 0.8902 31 1 -0.3633 0.5142 -0.8898 32 1 -0.3634 -1.0277 -0.0005 33 1 3.8191 0.3090 1.2959 34 1 3.7099 -1.2200 2.2007 35 1 5.1058 -1.4497 0.1423 36 1 3.6622 -2.4905 0.0872 37 1 3.9690 0.2435 -1.2407 38 1 3.9392 -1.3328 -2.0705 39 1 2.4016 -2.6472 -3.0015 40 1 1.2776 -6.8905 -1.3711 41 1 2.7609 -7.5033 -2.1632 42 1 2.4580 -10.2837 -1.5958 43 1 -0.6209 -6.1134 -3.1349 44 1 -0.1191 -6.3229 -4.8411 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025754733.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:40 Heat of formation + Delta-G solvation = -23.794461 kcal Electronic energy + Delta-G solvation = -24443.512585 eV Core-core repulsion = 20976.587430 eV Total energy + Delta-G solvation = -3466.925155 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.74451 -38.99135 -37.73204 -34.58965 -33.90994 -32.75383 -32.43309 -30.23258 -28.05896 -27.14031 -25.73407 -24.83866 -22.79393 -22.19508 -21.18302 -20.39097 -19.43038 -19.24755 -17.06564 -16.84979 -16.54039 -16.08595 -15.82312 -15.28576 -14.88624 -14.63371 -14.17992 -13.73369 -13.66855 -13.22197 -12.93879 -12.79023 -12.65073 -12.50012 -12.25281 -12.10651 -11.86544 -11.52998 -11.41395 -11.21006 -10.98921 -10.88143 -10.80024 -10.55404 -10.38566 -10.19137 -10.13490 -9.72340 -9.66532 -9.34281 -9.13961 -8.72379 -8.26698 -6.86045 -5.78644 -3.13334 2.72008 3.13712 3.39464 3.43662 3.45104 3.71526 4.30749 4.35526 4.46815 4.49396 4.52453 4.71906 4.84814 5.08416 5.16190 5.18039 5.20249 5.36260 5.37610 5.41607 5.42949 5.48328 5.58122 5.58681 5.65421 5.84776 5.85139 5.90085 5.91475 6.00956 6.15853 6.24416 6.46834 6.54601 6.69312 6.87367 6.89640 7.20630 7.37454 7.54756 7.64538 7.72249 8.21525 8.40542 9.11520 9.74362 10.51579 11.35525 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030820 B = 0.003237 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.285168 B = 8648.046382 C = 8938.888188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.112 3.888 3 H 0.059 0.941 4 O -0.360 6.360 5 C 0.060 3.940 6 C -0.162 4.162 7 C -0.113 4.113 8 C -0.143 4.143 9 H 0.103 0.897 10 C 0.523 3.477 11 O -0.514 6.514 12 N -0.700 5.700 13 C 0.098 3.902 14 H 0.130 0.870 15 C -0.179 4.179 16 H 0.100 0.900 17 C 0.186 3.814 18 N -0.593 5.593 19 C -0.230 4.230 20 H 0.076 0.924 21 C -0.004 4.004 22 N -0.914 5.914 23 Si 0.913 3.087 24 H -0.285 1.285 25 H -0.289 1.289 26 H -0.283 1.283 27 C 0.156 3.844 28 C -0.185 4.185 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.046 0.954 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.395 0.605 40 H 0.026 0.974 41 H 0.090 0.910 42 H 0.255 0.745 43 H 0.027 0.973 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.752 21.952 1.275 22.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.053 3.947 3 H 0.077 0.923 4 O -0.279 6.279 5 C -0.017 4.017 6 C -0.199 4.199 7 C -0.150 4.150 8 C -0.165 4.165 9 H 0.121 0.879 10 C 0.309 3.691 11 O -0.389 6.389 12 N -0.349 5.349 13 C -0.008 4.008 14 H 0.148 0.852 15 C -0.200 4.200 16 H 0.118 0.882 17 C 0.060 3.940 18 N -0.316 5.316 19 C -0.358 4.358 20 H 0.094 0.906 21 C -0.202 4.202 22 N -0.560 5.560 23 Si 0.743 3.257 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.210 1.210 27 C 0.029 3.971 28 C -0.206 4.206 29 H 0.120 0.880 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.118 0.882 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.229 0.771 40 H 0.044 0.956 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.044 0.956 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.146 21.303 2.112 21.638 hybrid contribution 0.897 -0.494 -1.198 1.576 sum 4.044 20.809 0.914 21.218 Atomic orbital electron populations 1.22117 0.92652 1.05991 1.01403 1.21792 0.95840 0.93329 0.83712 0.92298 1.88094 1.20042 1.77795 1.41950 1.22550 0.81804 0.98946 0.98418 1.22235 1.01262 1.01310 0.95126 1.21591 0.92843 1.01765 0.98850 1.22123 0.97423 0.95135 1.01807 0.87896 1.20219 0.80848 0.86606 0.81460 1.90653 1.35895 1.76176 1.36159 1.45422 1.50858 1.12739 1.25928 1.21811 1.00363 0.79449 0.99128 0.85191 1.24710 0.95045 0.96749 1.03537 0.88223 1.21039 0.97011 0.86558 0.89430 1.45168 1.41749 1.07934 1.36794 1.18948 1.34246 0.83178 0.99396 0.90588 1.24903 1.01925 0.97776 0.95565 1.69888 1.45678 1.31557 1.08901 0.86189 0.77981 0.83103 0.78407 1.21109 1.21527 1.20957 1.21120 0.91934 0.85822 0.98250 1.24277 1.03368 1.00485 0.92448 0.88002 0.92235 0.92004 0.88224 0.93536 0.88872 0.90554 0.90494 0.90741 0.90894 0.77126 0.95618 0.89161 0.93463 0.95562 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.21 37.16 0.34 -1.51 16 2 C 0.11 1.20 2.84 -26.69 -0.08 1.13 16 3 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 4 O -0.36 -4.77 9.47 -51.82 -0.49 -5.26 16 5 C 0.06 0.60 6.84 37.21 0.25 0.86 16 6 C -0.16 -1.57 5.87 -26.59 -0.16 -1.73 16 7 C -0.11 -0.92 5.46 -26.55 -0.14 -1.06 16 8 C -0.14 -1.41 2.60 -91.63 -0.24 -1.65 16 9 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 10 C 0.52 7.22 5.64 -10.99 -0.06 7.16 16 11 O -0.51 -9.19 12.46 -11.04 -0.14 -9.33 16 12 N -0.70 -9.30 5.44 -53.81 -0.29 -9.59 16 13 C 0.10 1.67 5.97 -67.93 -0.41 1.26 16 14 H 0.13 2.54 7.40 -51.93 -0.38 2.16 16 15 C -0.18 -3.43 7.06 -89.22 -0.63 -4.06 16 16 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 17 C 0.19 4.55 5.70 -2.41 -0.01 4.53 16 18 N -0.59 -15.36 3.38 -168.86 -0.57 -15.93 16 19 C -0.23 -6.43 10.35 -15.06 -0.16 -6.59 16 20 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 21 C 0.00 -0.12 5.40 -17.43 -0.09 -0.22 16 22 N -0.91 -27.00 10.86 55.49 0.60 -26.40 16 23 Si 0.91 21.97 29.56 -169.99 -5.03 16.94 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.16 3.30 7.04 -2.41 -0.02 3.28 16 28 C -0.18 -3.26 7.05 -89.23 -0.63 -3.89 16 29 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 1.44 5.31 -51.92 -0.28 1.17 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.98 7.40 -51.93 -0.38 0.60 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.54 7.49 -51.93 -0.39 0.15 16 39 H 0.40 4.12 8.21 -40.82 -0.34 3.78 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 2.45 6.51 -51.93 -0.34 2.12 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 343.86 15.07 5.18 5.18 Total: -1.00 -32.73 343.86 -9.91 -42.63 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -7.15 Total: 4.24 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -2.03 Total: -2.48 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.26 Total: -51.92 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.63 Total: -14.59 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.73 -9.91 -42.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025754733.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.838 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds