Wall clock time and date at job start Tue Mar 31 2020 07:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.49021 * 2 1 4 4 O 1.42908 * 109.47962 * 120.02458 * 2 1 3 5 5 C 1.42903 * 114.09618 * 181.14024 * 4 2 1 6 6 C 1.53092 * 109.41878 * 298.84574 * 5 4 2 7 7 C 1.53177 * 109.16368 * 57.60710 * 6 5 4 8 8 C 1.53090 * 109.48448 * 239.96707 * 2 1 3 9 9 H 1.09001 * 109.56751 * 62.47040 * 8 2 1 10 10 C 1.50702 * 109.52402 * 302.31882 * 8 2 1 11 11 O 1.21280 * 119.99841 * 0.30451 * 10 8 2 12 12 N 1.34770 * 119.99988 * 180.31339 * 10 8 2 13 13 C 1.46499 * 120.00224 * 179.97438 * 12 10 8 14 14 H 1.08998 * 115.51541 * 9.58093 * 13 12 10 15 15 C 1.53002 * 117.44568 * 224.23845 * 13 12 10 16 16 H 1.08998 * 119.53766 * 4.11743 * 15 13 12 17 17 C 1.54393 * 118.12275 * 160.80444 * 15 13 12 18 18 N 1.48139 * 104.61317 * 87.19455 * 17 15 13 19 19 C 1.36941 * 127.83855 * 140.41452 * 18 17 15 20 20 H 1.07993 * 120.00173 * 195.61364 * 19 18 17 21 21 C 1.38814 * 119.99555 * 15.61753 * 19 18 17 22 22 N 1.31617 * 120.00379 * 9.10184 * 21 19 18 23 23 Si 1.86801 * 119.99688 * 189.10633 * 21 19 18 24 24 H 1.48501 * 109.47356 * 59.99732 * 23 21 19 25 25 H 1.48499 * 109.47063 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47051 * 299.99933 * 23 21 19 27 27 C 1.48151 * 104.32660 * 320.41275 * 18 17 15 28 28 C 1.52995 * 117.44688 * 154.99650 * 13 12 10 29 29 H 1.09005 * 119.54125 * 354.29273 * 28 13 12 30 30 H 1.08999 * 109.47316 * 299.97333 * 1 2 3 31 31 H 1.09004 * 109.47053 * 59.97508 * 1 2 3 32 32 H 1.09009 * 109.47204 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47647 * 58.83010 * 5 4 2 34 34 H 1.09000 * 109.47713 * 178.84726 * 5 4 2 35 35 H 1.08991 * 109.52064 * 177.51488 * 6 5 4 36 36 H 1.09005 * 109.51790 * 297.63919 * 6 5 4 37 37 H 1.09001 * 109.54217 * 62.88764 * 7 6 5 38 38 H 1.08997 * 109.54084 * 183.15775 * 7 6 5 39 39 H 0.97001 * 120.00501 * 359.97438 * 12 10 8 40 40 H 1.08999 * 110.40718 * 328.41186 * 17 15 13 41 41 H 1.08998 * 110.50273 * 206.02939 * 17 15 13 42 42 H 0.96995 * 120.00218 * 180.02562 * 22 21 19 43 43 H 1.09003 * 110.40392 * 280.80007 * 27 18 17 44 44 H 1.09004 * 110.40528 * 158.37479 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 8 2.0065 -0.6741 1.1665 5 6 3.4307 -0.7093 1.2791 6 6 4.0177 -1.4600 0.0810 7 6 3.5711 -0.7709 -1.2121 8 6 2.0406 -0.7223 -1.2495 9 1 1.7148 -0.1853 -2.1403 10 6 1.4927 -2.1259 -1.2790 11 8 0.7607 -2.5099 -0.3916 12 7 1.8163 -2.9544 -2.2915 13 6 1.2842 -4.3190 -2.3200 14 1 0.5112 -4.5371 -1.5831 15 6 2.2542 -5.4469 -2.6779 16 1 3.3091 -5.2197 -2.8318 17 6 1.8685 -6.8899 -2.2871 18 7 1.0576 -7.3812 -3.4253 19 6 1.0727 -8.6282 -3.9910 20 1 0.6259 -8.7864 -4.9614 21 6 1.6623 -9.6890 -3.3171 22 7 2.0457 -9.5427 -2.0666 23 14 1.9118 -11.3240 -4.1853 24 1 2.7806 -11.1263 -5.3733 25 1 2.5571 -12.2850 -3.2551 26 1 0.5964 -11.8605 -4.6179 27 6 0.2264 -6.2176 -3.8126 28 6 1.1715 -5.0037 -3.6836 29 1 1.3947 -4.4387 -4.5887 30 1 -0.3634 0.5134 0.8902 31 1 -0.3633 0.5142 -0.8898 32 1 -0.3634 -1.0277 -0.0005 33 1 3.8191 0.3090 1.2959 34 1 3.7099 -1.2200 2.2007 35 1 5.1058 -1.4497 0.1423 36 1 3.6622 -2.4905 0.0872 37 1 3.9690 0.2435 -1.2407 38 1 3.9392 -1.3328 -2.0705 39 1 2.4016 -2.6472 -3.0015 40 1 1.2776 -6.8905 -1.3711 41 1 2.7609 -7.5033 -2.1632 42 1 2.4580 -10.2837 -1.5958 43 1 -0.6209 -6.1134 -3.1349 44 1 -0.1191 -6.3229 -4.8411 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025754733.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:40 Heat of formation + Delta-G solvation = -45.578312 kcal Electronic energy + Delta-G solvation = -24444.457204 eV Core-core repulsion = 20976.587430 eV Total energy + Delta-G solvation = -3467.869774 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.73356 -40.41803 -38.90014 -36.09977 -34.98210 -34.01416 -33.53199 -32.03535 -28.99518 -28.89613 -27.57963 -25.71270 -24.03156 -23.09879 -22.55430 -21.90701 -20.93018 -20.45013 -18.88438 -17.97601 -17.71173 -17.04219 -16.77121 -16.76332 -16.19108 -15.78079 -15.43010 -15.23929 -14.80347 -14.67759 -14.63057 -13.86132 -13.70579 -13.53916 -13.31032 -13.26958 -13.18460 -12.95119 -12.83663 -12.68907 -12.62195 -12.17196 -12.07326 -11.97981 -11.85976 -11.68227 -11.54732 -11.32736 -10.84117 -10.74371 -10.57609 -10.24959 -9.63960 -8.94540 -7.92745 -5.30614 1.45979 1.49657 1.56502 1.65049 2.00547 2.48068 2.85509 2.95548 3.27580 3.52209 3.61753 3.75338 3.79945 3.85542 3.92620 4.02365 4.06539 4.13697 4.36340 4.38998 4.43414 4.47797 4.50335 4.68018 4.74790 4.79919 4.83583 4.85527 4.89854 4.97103 4.98279 5.12406 5.15267 5.26570 5.28621 5.39702 5.42753 5.49529 5.61503 5.65883 6.14527 6.46047 6.60837 6.97888 7.36792 7.65606 8.44203 9.20975 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030820 B = 0.003237 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.285168 B = 8648.046382 C = 8938.888188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 H 0.093 0.907 4 O -0.399 6.399 5 C 0.054 3.946 6 C -0.162 4.162 7 C -0.109 4.109 8 C -0.134 4.134 9 H 0.139 0.861 10 C 0.517 3.483 11 O -0.561 6.561 12 N -0.686 5.686 13 C 0.120 3.880 14 H 0.098 0.902 15 C -0.185 4.185 16 H 0.121 0.879 17 C 0.191 3.809 18 N -0.617 5.617 19 C -0.245 4.245 20 H 0.085 0.915 21 C -0.063 4.063 22 N -0.950 5.950 23 Si 0.984 3.016 24 H -0.273 1.273 25 H -0.295 1.295 26 H -0.274 1.274 27 C 0.147 3.853 28 C -0.158 4.158 29 H 0.142 0.858 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.035 0.965 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.415 0.585 40 H -0.011 1.011 41 H 0.056 0.944 42 H 0.250 0.750 43 H 0.016 0.984 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.011 24.864 -1.182 25.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.046 3.954 3 H 0.110 0.890 4 O -0.318 6.318 5 C -0.023 4.023 6 C -0.200 4.200 7 C -0.146 4.146 8 C -0.156 4.156 9 H 0.157 0.843 10 C 0.306 3.694 11 O -0.439 6.439 12 N -0.337 5.337 13 C 0.012 3.988 14 H 0.116 0.884 15 C -0.207 4.207 16 H 0.138 0.862 17 C 0.064 3.936 18 N -0.341 5.341 19 C -0.374 4.374 20 H 0.103 0.897 21 C -0.257 4.257 22 N -0.597 5.597 23 Si 0.811 3.189 24 H -0.199 1.199 25 H -0.221 1.221 26 H -0.200 1.200 27 C 0.021 3.979 28 C -0.179 4.179 29 H 0.160 0.840 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.054 0.946 37 H 0.126 0.874 38 H 0.104 0.896 39 H 0.252 0.748 40 H 0.007 0.993 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.034 0.966 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.412 24.269 -0.386 24.669 hybrid contribution 0.416 -1.369 -0.342 1.471 sum 4.828 22.899 -0.728 23.414 Atomic orbital electron populations 1.22097 0.93721 1.03766 1.02611 1.22028 0.95230 0.94815 0.83339 0.88969 1.88054 1.21831 1.78606 1.43354 1.22707 0.80615 1.00557 0.98407 1.22232 1.02388 0.99104 0.96291 1.21670 0.91208 1.03700 0.98056 1.22198 0.98578 0.91863 1.02928 0.84296 1.21128 0.79821 0.88151 0.80324 1.90666 1.37975 1.77363 1.37882 1.45236 1.50928 1.10780 1.26739 1.21285 0.98491 0.81027 0.97991 0.88396 1.24372 0.96630 0.94285 1.05389 0.86162 1.20731 0.94875 0.89651 0.88298 1.45483 1.43089 1.08665 1.36865 1.19404 1.33757 0.84364 0.99832 0.89717 1.25810 1.02106 1.01499 0.96249 1.70112 1.46823 1.32245 1.10532 0.85081 0.78114 0.78410 0.77269 1.19905 1.22080 1.20021 1.21286 0.92012 0.85887 0.98686 1.24189 1.00570 0.99183 0.93944 0.84004 0.92348 0.89517 0.92030 0.90639 0.89660 0.88554 0.94566 0.87350 0.89609 0.74763 0.99277 0.92530 0.94116 0.96603 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.52 9.21 71.98 0.66 -2.85 16 2 C 0.10 1.97 2.84 30.62 0.09 2.05 16 3 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 4 O -0.40 -10.30 9.47 -133.12 -1.26 -11.56 16 5 C 0.05 0.99 6.84 72.01 0.49 1.49 16 6 C -0.16 -2.83 5.87 30.68 0.18 -2.65 16 7 C -0.11 -1.30 5.46 30.71 0.17 -1.14 16 8 C -0.13 -2.18 2.60 -11.45 -0.03 -2.21 16 9 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 10 C 0.52 13.65 5.64 87.66 0.49 14.14 16 11 O -0.56 -20.69 12.46 12.84 0.16 -20.53 16 12 N -0.69 -16.78 5.44 -442.55 -2.41 -19.19 16 13 C 0.12 4.02 5.97 44.99 0.27 4.29 16 14 H 0.10 4.02 7.40 -2.39 -0.02 4.00 16 15 C -0.19 -7.08 7.06 -9.88 -0.07 -7.15 16 16 H 0.12 4.11 8.14 -2.39 -0.02 4.09 16 17 C 0.19 9.83 5.70 86.54 0.49 10.32 16 18 N -0.62 -32.75 3.38 -688.15 -2.33 -35.07 16 19 C -0.25 -13.95 10.35 84.03 0.87 -13.08 16 20 H 0.09 4.54 7.84 -2.91 -0.02 4.52 16 21 C -0.06 -3.63 5.40 84.86 0.46 -3.18 16 22 N -0.95 -58.56 10.86 21.65 0.24 -58.32 16 23 Si 0.98 45.83 29.56 68.60 2.03 47.86 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 26 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 27 C 0.15 6.21 7.04 86.53 0.61 6.82 16 28 C -0.16 -5.30 7.05 -9.89 -0.07 -5.37 16 29 H 0.14 3.72 8.14 -2.38 -0.02 3.70 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.83 5.31 -2.38 -0.01 1.82 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.04 0.92 7.40 -2.38 -0.02 0.90 16 37 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.09 0.85 7.49 -2.39 -0.02 0.83 16 39 H 0.42 6.98 8.21 -92.71 -0.76 6.22 16 40 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 41 H 0.06 3.26 6.51 -2.39 -0.02 3.25 16 42 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 43 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.07 2.61 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -77.24 343.86 1.28 -75.97 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.23 Total: 19.38 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 4.62 Total: 1.48 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -4.50 Total: -112.59 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -1.10 Total: -32.09 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -77.24 1.28 -75.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025754733.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.387 kcal (2) G-P(sol) polarization free energy of solvation -77.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds