Wall clock time and date at job start Tue Mar 31 2020 06:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.87151 * 2 1 4 4 O 1.43739 * 110.00356 * 121.08395 * 2 1 3 5 5 C 1.44376 * 106.97638 * 146.00467 * 4 2 1 6 6 C 1.54994 * 103.49170 * 319.94217 * 5 4 2 7 7 C 1.54100 * 109.87672 * 238.99181 * 2 1 3 8 8 C 1.52992 * 110.48803 * 357.20554 * 7 2 1 9 9 C 1.50700 * 110.48696 * 119.72273 * 7 2 1 10 10 O 1.21286 * 120.00061 * 359.97438 * 9 7 2 11 11 N 1.34777 * 119.99886 * 180.02562 * 9 7 2 12 12 C 1.46505 * 119.99639 * 180.02562 * 11 9 7 13 13 H 1.09002 * 115.51969 * 9.30202 * 12 11 9 14 14 C 1.52999 * 117.43697 * 223.96227 * 12 11 9 15 15 H 1.09001 * 119.54443 * 4.11211 * 14 12 11 16 16 C 1.57694 * 116.11081 * 161.63829 * 14 12 11 17 17 N 1.48148 * 104.67344 * 87.30407 * 16 14 12 18 18 C 1.36939 * 127.83651 * 139.77366 * 17 16 14 19 19 H 1.07995 * 120.00277 * 344.36186 * 18 17 16 20 20 C 1.38816 * 119.99635 * 164.35542 * 18 17 16 21 21 N 1.31618 * 120.00428 * 350.57500 * 20 18 17 22 22 Si 1.86807 * 119.99692 * 170.57670 * 20 18 17 23 23 H 1.48490 * 109.47422 * 89.99934 * 22 20 18 24 24 H 1.48505 * 109.47114 * 210.00311 * 22 20 18 25 25 H 1.48501 * 109.47036 * 329.99942 * 22 20 18 26 26 C 1.48143 * 104.32572 * 319.77779 * 17 16 14 27 27 C 1.53000 * 117.44066 * 154.72140 * 12 11 9 28 28 H 1.09004 * 119.54057 * 355.87905 * 27 12 11 29 29 H 1.08995 * 109.47393 * 181.01116 * 1 2 3 30 30 H 1.08999 * 109.46921 * 301.00834 * 1 2 3 31 31 H 1.08997 * 109.47255 * 61.00285 * 1 2 3 32 32 H 1.09004 * 110.61709 * 78.44196 * 5 4 2 33 33 H 1.09002 * 110.62253 * 201.44128 * 5 4 2 34 34 H 1.09001 * 110.90854 * 278.82516 * 6 5 4 35 35 H 1.08998 * 110.90999 * 155.21656 * 6 5 4 36 36 H 1.09000 * 109.47426 * 181.84471 * 8 7 2 37 37 H 1.08996 * 109.47287 * 301.84381 * 8 7 2 38 38 H 1.09000 * 109.47613 * 61.84454 * 8 7 2 39 39 H 0.96993 * 120.00357 * 359.71862 * 11 9 7 40 40 H 1.08999 * 110.92013 * 328.22830 * 16 14 12 41 41 H 1.08996 * 109.83875 * 205.83738 * 16 14 12 42 42 H 0.96994 * 119.99809 * 179.97438 * 21 20 18 43 43 H 1.09003 * 110.40346 * 280.79791 * 26 17 16 44 44 H 1.08999 * 110.50825 * 158.41854 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 8 2.0217 -0.6973 1.1567 5 6 3.2417 -1.3609 0.7620 6 6 2.9226 -1.8882 -0.6601 7 6 2.0539 -0.7466 -1.2421 8 6 0.8898 -1.3166 -2.0549 9 6 2.8915 0.1713 -2.0948 10 8 3.0650 1.3230 -1.7565 11 7 3.4468 -0.2875 -3.2340 12 6 4.2615 0.6047 -4.0626 13 1 4.5023 1.5699 -3.6170 14 6 4.0351 0.5642 -5.5752 15 1 3.2430 -0.0635 -5.9835 16 6 4.5676 1.8048 -6.3902 17 7 5.9784 1.4739 -6.6983 18 6 6.6591 1.7014 -7.8645 19 1 6.1176 1.9363 -8.7689 20 6 8.0453 1.6303 -7.8842 21 7 8.7152 1.5294 -6.7557 22 14 8.9599 1.6780 -9.5123 23 1 9.2750 3.0863 -9.8621 24 1 10.2213 0.9031 -9.3944 25 1 8.1106 1.0822 -10.5748 26 6 6.4856 0.8408 -5.4587 27 6 5.3171 -0.0387 -4.9641 28 1 5.4799 -1.1155 -4.9171 29 1 -0.3634 -1.0274 0.0181 30 1 -0.3633 0.5294 0.8808 31 1 -0.3633 0.4982 -0.8988 32 1 4.0708 -0.6538 0.7321 33 1 3.4648 -2.1874 1.4367 34 1 2.3590 -2.8200 -0.6121 35 1 3.8357 -2.0170 -1.2412 36 1 1.2797 -1.8683 -2.9103 37 1 0.3025 -1.9869 -1.4274 38 1 0.2579 -0.5008 -2.4060 39 1 3.3109 -1.2094 -3.5029 40 1 4.5124 2.7152 -5.7934 41 1 3.9938 1.9169 -7.3101 42 1 9.6838 1.4794 -6.7696 43 1 6.7299 1.6008 -4.7165 44 1 7.3594 0.2259 -5.6739 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025921744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:08 Heat of formation + Delta-G solvation = -20.208457 kcal Electronic energy + Delta-G solvation = -24226.938149 eV Core-core repulsion = 20760.168495 eV Total energy + Delta-G solvation = -3466.769655 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.05388 -39.10498 -37.91200 -34.67202 -34.18529 -32.65267 -31.68125 -30.21779 -27.91983 -27.06231 -26.05437 -25.46047 -23.02780 -22.36630 -21.06327 -20.47930 -19.40094 -19.16076 -17.63551 -16.86010 -16.42026 -16.11543 -15.60459 -15.40003 -14.72640 -14.59894 -14.34712 -14.14063 -13.66209 -13.31547 -13.15352 -12.85828 -12.78655 -12.47676 -12.26774 -11.96715 -11.72119 -11.57947 -11.52881 -11.43972 -11.17953 -11.03075 -10.97559 -10.85336 -10.39869 -10.25321 -10.19190 -9.93938 -9.77063 -9.62954 -9.25115 -8.77448 -8.38246 -6.90480 -5.83146 -3.17398 2.50456 2.98666 3.36284 3.41689 3.43608 3.60167 4.07086 4.27850 4.37014 4.43560 4.44727 4.66134 4.84216 4.92863 5.09377 5.14095 5.22402 5.28117 5.32398 5.34526 5.36128 5.42596 5.48678 5.53850 5.62271 5.64091 5.69738 5.70471 5.82250 5.91131 6.01571 6.10662 6.18879 6.47549 6.65073 6.67154 6.75241 6.84755 7.30505 7.48388 7.50019 7.67959 8.16628 8.17777 9.07425 9.70310 10.47105 11.31330 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.037859 B = 0.003007 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.400458 B = 9309.937848 C = 9570.395659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.083 3.917 3 H 0.094 0.906 4 O -0.372 6.372 5 C 0.047 3.953 6 C -0.144 4.144 7 C -0.113 4.113 8 C -0.137 4.137 9 C 0.528 3.472 10 O -0.533 6.533 11 N -0.693 5.693 12 C 0.092 3.908 13 H 0.132 0.868 14 C -0.184 4.184 15 H 0.106 0.894 16 C 0.158 3.842 17 N -0.593 5.593 18 C -0.229 4.229 19 H 0.077 0.923 20 C -0.005 4.005 21 N -0.915 5.915 22 Si 0.913 3.087 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.280 1.280 26 C 0.186 3.814 27 C -0.179 4.179 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.398 0.602 40 H 0.031 0.969 41 H 0.050 0.950 42 H 0.255 0.745 43 H 0.026 0.974 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.065 -9.381 12.085 21.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.026 3.974 3 H 0.112 0.888 4 O -0.292 6.292 5 C -0.030 4.030 6 C -0.182 4.182 7 C -0.117 4.117 8 C -0.194 4.194 9 C 0.313 3.687 10 O -0.409 6.409 11 N -0.341 5.341 12 C -0.014 4.014 13 H 0.149 0.851 14 C -0.206 4.206 15 H 0.124 0.876 16 C 0.030 3.970 17 N -0.316 5.316 18 C -0.357 4.357 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.560 5.560 22 Si 0.743 3.257 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.206 1.206 26 C 0.060 3.940 27 C -0.201 4.201 28 H 0.119 0.881 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.232 0.768 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.044 0.956 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.774 -8.513 12.401 21.083 hybrid contribution 0.603 -0.636 -1.220 1.503 sum -14.170 -9.149 11.181 20.236 Atomic orbital electron populations 1.22027 0.93486 1.02660 1.02573 1.22796 0.95102 0.97066 0.82474 0.88793 1.88861 1.39341 1.67967 1.32997 1.23529 0.88165 0.96600 0.94681 1.23280 1.00194 0.97638 0.97095 1.22147 0.96681 0.96040 0.96809 1.21941 0.96578 1.01433 0.99440 1.20153 0.79433 0.88106 0.80962 1.90696 1.60500 1.18550 1.71141 1.45365 1.51282 1.14418 1.23030 1.21929 0.96202 0.95729 0.87525 0.85086 1.25094 0.99667 1.02790 0.93036 0.87575 1.21696 0.87315 0.92047 0.95903 1.45117 1.06562 1.67717 1.12178 1.18984 0.88575 1.42463 0.85652 0.90511 1.24906 0.96269 1.01803 0.97228 1.69896 1.06551 1.55409 1.24189 0.86114 0.79232 0.77652 0.82699 1.21392 1.21536 1.20562 1.21052 0.92658 0.93292 0.87024 1.24637 0.93867 0.99937 1.01629 0.88140 0.91686 0.91868 0.90947 0.91810 0.88613 0.89229 0.89585 0.91980 0.90692 0.91252 0.76776 0.95165 0.93107 0.93500 0.95602 0.89132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.41 37.16 0.31 -1.01 16 2 C 0.08 0.94 3.66 -26.16 -0.10 0.85 16 3 H 0.09 1.30 6.43 -51.93 -0.33 0.97 16 4 O -0.37 -4.42 11.19 -35.23 -0.39 -4.82 16 5 C 0.05 0.45 7.72 38.21 0.29 0.75 16 6 C -0.14 -1.21 6.25 -24.72 -0.15 -1.37 16 7 C -0.11 -1.13 0.82 -154.13 -0.13 -1.26 16 8 C -0.14 -1.03 7.16 37.15 0.27 -0.76 16 9 C 0.53 7.17 6.45 -10.99 -0.07 7.10 16 10 O -0.53 -9.43 14.82 5.55 0.08 -9.35 16 11 N -0.69 -8.92 5.31 -53.80 -0.29 -9.20 16 12 C 0.09 1.51 5.92 -67.93 -0.40 1.11 16 13 H 0.13 2.50 7.40 -51.93 -0.38 2.11 16 14 C -0.18 -3.20 7.34 -87.38 -0.64 -3.84 16 15 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 16 C 0.16 3.30 7.10 -0.57 0.00 3.30 16 17 N -0.59 -15.08 3.38 -166.74 -0.56 -15.64 16 18 C -0.23 -6.32 10.35 -15.06 -0.16 -6.48 16 19 H 0.08 2.05 7.85 -52.49 -0.41 1.63 16 20 C 0.00 -0.13 5.40 -17.43 -0.09 -0.23 16 21 N -0.91 -26.58 10.88 55.49 0.60 -25.98 16 22 Si 0.91 21.72 29.56 -169.99 -5.03 16.69 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.19 4.42 5.69 -2.41 -0.01 4.40 16 27 C -0.18 -3.30 6.98 -89.22 -0.62 -3.92 16 28 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 29 H 0.06 0.49 6.66 -51.93 -0.35 0.15 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.59 6.88 -51.93 -0.36 0.23 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.59 7.87 -51.93 -0.41 0.18 16 35 H 0.09 0.71 7.74 -51.93 -0.40 0.30 16 36 H 0.06 0.41 7.49 -51.93 -0.39 0.02 16 37 H 0.07 0.47 6.72 -51.93 -0.35 0.12 16 38 H 0.07 0.54 6.84 -51.93 -0.35 0.19 16 39 H 0.40 4.01 8.16 -40.82 -0.33 3.68 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.09 2.39 6.53 -51.93 -0.34 2.05 16 LS Contribution 345.74 15.07 5.21 5.21 Total: -1.00 -32.04 345.74 -8.81 -40.84 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.93 Total: 3.62 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -1.51 Total: -1.37 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.25 Total: -50.83 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.31 Total: -14.16 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.04 -8.81 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025921744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.635 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds