Wall clock time and date at job start Tue Mar 31 2020 06:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.87151 * 2 1 4 4 O 1.43739 * 110.00356 * 121.08395 * 2 1 3 5 5 C 1.44376 * 106.97638 * 146.00467 * 4 2 1 6 6 C 1.54994 * 103.49170 * 319.94217 * 5 4 2 7 7 C 1.54100 * 109.87672 * 238.99181 * 2 1 3 8 8 C 1.52992 * 110.48803 * 357.20554 * 7 2 1 9 9 C 1.50700 * 110.48696 * 119.72273 * 7 2 1 10 10 O 1.21286 * 120.00061 * 359.97438 * 9 7 2 11 11 N 1.34777 * 119.99886 * 180.02562 * 9 7 2 12 12 C 1.46505 * 119.99639 * 180.02562 * 11 9 7 13 13 H 1.09002 * 115.51969 * 9.30202 * 12 11 9 14 14 C 1.52999 * 117.43697 * 223.96227 * 12 11 9 15 15 H 1.09001 * 119.54443 * 4.11211 * 14 12 11 16 16 C 1.57694 * 116.11081 * 161.63829 * 14 12 11 17 17 N 1.48148 * 104.67344 * 87.30407 * 16 14 12 18 18 C 1.36939 * 127.83651 * 139.77366 * 17 16 14 19 19 H 1.07995 * 120.00277 * 344.36186 * 18 17 16 20 20 C 1.38816 * 119.99635 * 164.35542 * 18 17 16 21 21 N 1.31618 * 120.00428 * 350.57500 * 20 18 17 22 22 Si 1.86807 * 119.99692 * 170.57670 * 20 18 17 23 23 H 1.48490 * 109.47422 * 89.99934 * 22 20 18 24 24 H 1.48505 * 109.47114 * 210.00311 * 22 20 18 25 25 H 1.48501 * 109.47036 * 329.99942 * 22 20 18 26 26 C 1.48143 * 104.32572 * 319.77779 * 17 16 14 27 27 C 1.53000 * 117.44066 * 154.72140 * 12 11 9 28 28 H 1.09004 * 119.54057 * 355.87905 * 27 12 11 29 29 H 1.08995 * 109.47393 * 181.01116 * 1 2 3 30 30 H 1.08999 * 109.46921 * 301.00834 * 1 2 3 31 31 H 1.08997 * 109.47255 * 61.00285 * 1 2 3 32 32 H 1.09004 * 110.61709 * 78.44196 * 5 4 2 33 33 H 1.09002 * 110.62253 * 201.44128 * 5 4 2 34 34 H 1.09001 * 110.90854 * 278.82516 * 6 5 4 35 35 H 1.08998 * 110.90999 * 155.21656 * 6 5 4 36 36 H 1.09000 * 109.47426 * 181.84471 * 8 7 2 37 37 H 1.08996 * 109.47287 * 301.84381 * 8 7 2 38 38 H 1.09000 * 109.47613 * 61.84454 * 8 7 2 39 39 H 0.96993 * 120.00357 * 359.71862 * 11 9 7 40 40 H 1.08999 * 110.92013 * 328.22830 * 16 14 12 41 41 H 1.08996 * 109.83875 * 205.83738 * 16 14 12 42 42 H 0.96994 * 119.99809 * 179.97438 * 21 20 18 43 43 H 1.09003 * 110.40346 * 280.79791 * 26 17 16 44 44 H 1.08999 * 110.50825 * 158.41854 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 8 2.0217 -0.6973 1.1567 5 6 3.2417 -1.3609 0.7620 6 6 2.9226 -1.8882 -0.6601 7 6 2.0539 -0.7466 -1.2421 8 6 0.8898 -1.3166 -2.0549 9 6 2.8915 0.1713 -2.0948 10 8 3.0650 1.3230 -1.7565 11 7 3.4468 -0.2875 -3.2340 12 6 4.2615 0.6047 -4.0626 13 1 4.5023 1.5699 -3.6170 14 6 4.0351 0.5642 -5.5752 15 1 3.2430 -0.0635 -5.9835 16 6 4.5676 1.8048 -6.3902 17 7 5.9784 1.4739 -6.6983 18 6 6.6591 1.7014 -7.8645 19 1 6.1176 1.9363 -8.7689 20 6 8.0453 1.6303 -7.8842 21 7 8.7152 1.5294 -6.7557 22 14 8.9599 1.6780 -9.5123 23 1 9.2750 3.0863 -9.8621 24 1 10.2213 0.9031 -9.3944 25 1 8.1106 1.0822 -10.5748 26 6 6.4856 0.8408 -5.4587 27 6 5.3171 -0.0387 -4.9641 28 1 5.4799 -1.1155 -4.9171 29 1 -0.3634 -1.0274 0.0181 30 1 -0.3633 0.5294 0.8808 31 1 -0.3633 0.4982 -0.8988 32 1 4.0708 -0.6538 0.7321 33 1 3.4648 -2.1874 1.4367 34 1 2.3590 -2.8200 -0.6121 35 1 3.8357 -2.0170 -1.2412 36 1 1.2797 -1.8683 -2.9103 37 1 0.3025 -1.9869 -1.4274 38 1 0.2579 -0.5008 -2.4060 39 1 3.3109 -1.2094 -3.5029 40 1 4.5124 2.7152 -5.7934 41 1 3.9938 1.9169 -7.3101 42 1 9.6838 1.4794 -6.7696 43 1 6.7299 1.6008 -4.7165 44 1 7.3594 0.2259 -5.6739 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025921744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:07 Heat of formation + Delta-G solvation = -42.109651 kcal Electronic energy + Delta-G solvation = -24227.887856 eV Core-core repulsion = 20760.168495 eV Total energy + Delta-G solvation = -3467.719362 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.01532 -40.45678 -39.17026 -36.16353 -35.21793 -34.17076 -32.60865 -31.89112 -28.83437 -28.62755 -27.63691 -26.54600 -24.17592 -23.39797 -22.41235 -22.01387 -20.93583 -20.19675 -18.88787 -18.54283 -17.66760 -16.95285 -16.77308 -16.62962 -16.26750 -15.66705 -15.55001 -15.17908 -14.95215 -14.85033 -14.64747 -13.91193 -13.81874 -13.56761 -13.37389 -13.28516 -13.09685 -12.88124 -12.72993 -12.56849 -12.45518 -12.17735 -12.10056 -12.01759 -11.91064 -11.88596 -11.73928 -11.70445 -11.00796 -10.84582 -10.71776 -10.58006 -9.75611 -8.94712 -7.93717 -5.30698 1.41847 1.46716 1.48075 1.57908 1.85373 2.47418 2.82125 2.82762 3.26458 3.33924 3.50096 3.62813 3.65466 3.80300 3.88010 3.92876 4.05333 4.12326 4.24543 4.28410 4.40731 4.48928 4.56840 4.62493 4.68266 4.75788 4.81437 4.83923 4.87266 4.95826 4.99571 5.01950 5.11343 5.16332 5.25210 5.37717 5.39107 5.42925 5.50723 5.62225 5.87767 6.14303 6.43929 6.98213 7.12766 7.65208 8.43591 9.20318 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.037859 B = 0.003007 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.400458 B = 9309.937848 C = 9570.395659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.077 3.923 3 H 0.057 0.943 4 O -0.387 6.387 5 C 0.037 3.963 6 C -0.136 4.136 7 C -0.104 4.104 8 C -0.136 4.136 9 C 0.525 3.475 10 O -0.581 6.581 11 N -0.676 5.676 12 C 0.111 3.889 13 H 0.101 0.899 14 C -0.162 4.162 15 H 0.144 0.856 16 C 0.148 3.852 17 N -0.616 5.616 18 C -0.243 4.243 19 H 0.083 0.917 20 C -0.062 4.062 21 N -0.948 5.948 22 Si 0.982 3.018 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.266 1.266 26 C 0.189 3.811 27 C -0.178 4.178 28 H 0.128 0.872 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.418 0.582 40 H 0.019 0.981 41 H 0.063 0.937 42 H 0.250 0.750 43 H -0.007 1.007 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.336 -12.126 11.439 24.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.019 3.981 3 H 0.075 0.925 4 O -0.307 6.307 5 C -0.039 4.039 6 C -0.174 4.174 7 C -0.107 4.107 8 C -0.193 4.193 9 C 0.313 3.687 10 O -0.460 6.460 11 N -0.325 5.325 12 C 0.004 3.996 13 H 0.118 0.882 14 C -0.183 4.183 15 H 0.161 0.839 16 C 0.022 3.978 17 N -0.340 5.340 18 C -0.372 4.372 19 H 0.101 0.899 20 C -0.256 4.256 21 N -0.596 5.596 22 Si 0.810 3.190 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.190 1.190 26 C 0.063 3.937 27 C -0.199 4.199 28 H 0.146 0.854 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.084 0.916 39 H 0.256 0.744 40 H 0.037 0.963 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.011 0.989 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.092 -11.293 11.755 23.618 hybrid contribution 1.310 0.327 -0.927 1.638 sum -15.782 -10.966 10.828 22.058 Atomic orbital electron populations 1.22016 0.91445 1.03983 1.02779 1.22794 0.96719 0.95474 0.83157 0.92540 1.88849 1.40046 1.68133 1.33676 1.23711 0.86905 0.96762 0.96542 1.23340 1.00465 0.97953 0.95645 1.22137 0.97268 0.95533 0.95812 1.22012 0.95497 1.01765 0.99989 1.20903 0.78965 0.87989 0.80828 1.90692 1.62117 1.21012 1.72167 1.45129 1.50264 1.14794 1.22362 1.21422 0.95601 0.95006 0.87585 0.88159 1.25001 0.99551 1.00820 0.92912 0.83872 1.21835 0.85598 0.93393 0.97002 1.45416 1.08279 1.68384 1.11952 1.19401 0.89219 1.41794 0.86762 0.89880 1.25778 0.97147 1.02065 1.00585 1.70100 1.06325 1.56810 1.26316 0.85037 0.77678 0.77410 0.78892 1.21282 1.21838 1.19050 1.20783 0.93964 0.92730 0.86204 1.24308 0.92063 1.00257 1.03259 0.85418 0.89656 0.92251 0.90287 0.93957 0.86152 0.86105 0.89152 0.90190 0.88516 0.91559 0.74409 0.96331 0.91863 0.94061 0.98941 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.41 71.98 0.61 -1.68 16 2 C 0.08 1.67 3.66 30.97 0.11 1.78 16 3 H 0.06 1.65 6.43 -2.39 -0.02 1.63 16 4 O -0.39 -8.81 11.19 -148.98 -1.67 -10.48 16 5 C 0.04 0.66 7.72 72.66 0.56 1.22 16 6 C -0.14 -1.85 6.25 31.89 0.20 -1.65 16 7 C -0.10 -1.84 0.82 -51.94 -0.04 -1.88 16 8 C -0.14 -1.47 7.16 71.98 0.52 -0.95 16 9 C 0.53 13.68 6.45 87.66 0.57 14.25 16 10 O -0.58 -21.12 14.82 -3.05 -0.05 -21.17 16 11 N -0.68 -15.80 5.31 -442.52 -2.35 -18.15 16 12 C 0.11 3.56 5.92 44.99 0.27 3.83 16 13 H 0.10 3.96 7.40 -2.39 -0.02 3.94 16 14 C -0.16 -5.28 7.34 -8.69 -0.06 -5.34 16 15 H 0.14 3.71 8.14 -2.39 -0.02 3.69 16 16 C 0.15 6.17 7.10 87.73 0.62 6.79 16 17 N -0.62 -31.96 3.38 -681.43 -2.30 -34.26 16 18 C -0.24 -13.61 10.35 84.03 0.87 -12.74 16 19 H 0.08 4.41 7.85 -2.91 -0.02 4.39 16 20 C -0.06 -3.51 5.40 84.86 0.46 -3.05 16 21 N -0.95 -57.09 10.88 21.65 0.24 -56.85 16 22 Si 0.98 45.13 29.56 68.60 2.03 47.16 16 23 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 26 C 0.19 9.33 5.69 86.53 0.49 9.83 16 27 C -0.18 -6.36 6.98 -9.89 -0.07 -6.43 16 28 H 0.13 3.91 8.14 -2.39 -0.02 3.89 16 29 H 0.08 1.00 6.66 -2.39 -0.02 0.98 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.13 6.88 -2.39 -0.02 1.11 16 32 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.12 0.96 7.87 -2.39 -0.02 0.94 16 35 H 0.09 1.18 7.74 -2.39 -0.02 1.16 16 36 H 0.08 0.62 7.49 -2.39 -0.02 0.60 16 37 H 0.10 0.69 6.72 -2.39 -0.02 0.67 16 38 H 0.07 0.80 6.84 -2.39 -0.02 0.78 16 39 H 0.42 6.66 8.16 -92.71 -0.76 5.91 16 40 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 43 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 44 H 0.06 3.27 6.53 -2.39 -0.02 3.26 16 Total: -1.00 -73.90 345.74 1.24 -72.66 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.25 Total: 17.13 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 5.09 Total: 3.96 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -4.42 Total: -109.27 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -1.71 Total: -31.65 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -73.90 1.24 -72.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025921744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.552 kcal (2) G-P(sol) polarization free energy of solvation -73.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds