Wall clock time and date at job start Tue Mar 31 2020 07:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.52302 * 2 1 4 4 C 1.53093 * 109.52218 * 239.87578 * 2 1 3 5 5 O 1.42903 * 109.41861 * 182.48875 * 4 2 1 6 6 C 1.42901 * 114.09596 * 61.15868 * 5 4 2 7 7 C 1.53094 * 109.41589 * 298.84270 * 6 5 4 8 8 C 1.53175 * 109.52115 * 120.12979 * 2 1 3 9 9 H 1.09000 * 109.54187 * 296.75100 * 8 2 1 10 10 C 1.50706 * 109.54345 * 57.01948 * 8 2 1 11 11 O 1.21273 * 120.00039 * 12.28108 * 10 8 2 12 12 N 1.34782 * 119.99822 * 192.29071 * 10 8 2 13 13 C 1.46500 * 120.00019 * 179.97438 * 12 10 8 14 14 H 1.09002 * 115.51468 * 9.57712 * 13 12 10 15 15 C 1.53000 * 117.44181 * 224.23619 * 13 12 10 16 16 H 1.08998 * 119.53758 * 4.11897 * 15 13 12 17 17 C 1.54383 * 118.12246 * 160.80461 * 15 13 12 18 18 N 1.48147 * 104.61488 * 87.19205 * 17 15 13 19 19 C 1.36943 * 127.83713 * 140.39247 * 18 17 15 20 20 H 1.08000 * 119.99935 * 195.92416 * 19 18 17 21 21 C 1.38806 * 119.99999 * 15.93181 * 19 18 17 22 22 N 1.31626 * 120.00015 * 9.38606 * 21 19 18 23 23 Si 1.86801 * 120.00134 * 189.38508 * 21 19 18 24 24 H 1.48500 * 109.47049 * 89.99586 * 23 21 19 25 25 H 1.48499 * 109.47108 * 210.00107 * 23 21 19 26 26 H 1.48499 * 109.46987 * 330.00030 * 23 21 19 27 27 C 1.48147 * 104.32622 * 320.41260 * 18 17 15 28 28 C 1.52997 * 117.44424 * 154.99639 * 13 12 10 29 29 H 1.09004 * 119.53593 * 355.88005 * 28 13 12 30 30 H 1.09000 * 109.47693 * 174.42983 * 1 2 3 31 31 H 1.09001 * 109.46769 * 54.43178 * 1 2 3 32 32 H 1.09000 * 109.47508 * 294.43454 * 1 2 3 33 33 H 1.09004 * 109.48120 * 302.47227 * 4 2 1 34 34 H 1.09003 * 109.47990 * 62.50245 * 4 2 1 35 35 H 1.08998 * 109.48442 * 58.82476 * 6 5 4 36 36 H 1.09001 * 109.47854 * 178.86273 * 6 5 4 37 37 H 1.08993 * 109.52557 * 177.51491 * 7 6 5 38 38 H 1.09000 * 109.52351 * 297.70845 * 7 6 5 39 39 H 0.96998 * 119.99588 * 359.97438 * 12 10 8 40 40 H 1.08995 * 110.40916 * 205.97498 * 17 15 13 41 41 H 1.09003 * 110.41208 * 328.40857 * 17 15 13 42 42 H 0.97001 * 119.99614 * 180.02562 * 22 21 19 43 43 H 1.08997 * 110.40678 * 280.80508 * 27 18 17 44 44 H 1.08995 * 110.41038 * 158.36716 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0416 -0.7242 -1.2480 5 8 3.4694 -0.7737 -1.2168 6 6 4.0042 -1.4817 -0.0967 7 6 3.5716 -0.7880 1.1977 8 6 2.0418 -0.7247 1.2486 9 1 1.7279 -0.1814 2.1399 10 6 1.4816 -2.1233 1.2850 11 8 0.9335 -2.5826 0.3056 12 7 1.5896 -2.8635 2.4062 13 6 1.0445 -4.2229 2.4418 14 1 0.7151 -4.6219 1.4824 15 6 0.2514 -4.6322 3.6845 16 1 0.0575 -3.8962 4.4648 17 6 -0.6956 -5.8466 3.5760 18 7 0.1611 -7.0169 3.8779 19 6 -0.1607 -8.1261 4.6138 20 1 0.6194 -8.7808 4.9732 21 6 -1.4897 -8.4090 4.8976 22 7 -2.4483 -7.7238 4.3109 23 14 -1.9178 -9.7623 6.1121 24 1 -2.0059 -9.1903 7.4797 25 1 -3.2238 -10.3644 5.7421 26 1 -0.8638 -10.8079 6.0799 27 6 1.4452 -6.7149 3.2037 28 6 1.6629 -5.2047 3.4390 29 1 2.5205 -4.8951 4.0364 30 1 -0.3634 -1.0228 -0.0997 31 1 -0.3633 0.5978 -0.8359 32 1 -0.3634 0.4251 0.9356 33 1 1.6430 -1.7385 -1.2687 34 1 1.7158 -0.1873 -2.1390 35 1 3.6314 -2.5060 -0.1022 36 1 5.0925 -1.4905 -0.1581 37 1 3.9415 -1.3514 2.0542 38 1 3.9780 0.2231 1.2225 39 1 2.0281 -2.4961 3.1895 40 1 -1.5011 -5.7669 4.3060 41 1 -1.1018 -5.9230 2.5674 42 1 -3.3769 -7.9214 4.5096 43 1 1.3734 -6.9268 2.1369 44 1 2.2548 -7.2901 3.6527 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026021177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:50 Heat of formation + Delta-G solvation = -26.590712 kcal Electronic energy + Delta-G solvation = -24389.823616 eV Core-core repulsion = 20922.777206 eV Total energy + Delta-G solvation = -3467.046410 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.95376 -39.04273 -37.79089 -34.67747 -34.38126 -32.99700 -32.02111 -30.22999 -27.23665 -27.16292 -26.04323 -25.29851 -22.76503 -22.39200 -21.09205 -20.52080 -19.46785 -19.30393 -16.93881 -16.90130 -16.43843 -16.24715 -16.10920 -15.28695 -14.79270 -14.63440 -14.46324 -13.94504 -13.67693 -13.29954 -13.09111 -12.79189 -12.69736 -12.55538 -12.25018 -12.14452 -11.83700 -11.57386 -11.42907 -11.21570 -11.02179 -10.85791 -10.82541 -10.65312 -10.43021 -10.20344 -10.17187 -9.81973 -9.75954 -9.26149 -9.15753 -8.76908 -8.36235 -6.89702 -5.82265 -3.17038 2.54212 3.05813 3.36804 3.41918 3.44103 3.77959 4.23980 4.30597 4.42442 4.46908 4.51225 4.71384 4.90927 5.06296 5.10594 5.24479 5.31373 5.33976 5.35014 5.42644 5.46979 5.50718 5.53496 5.64534 5.71666 5.79477 5.82763 5.84638 5.92669 5.98834 6.13489 6.19198 6.35412 6.48737 6.64678 6.77680 6.84699 7.10004 7.32653 7.50192 7.52338 7.68880 8.17675 8.23904 9.08086 9.70903 10.47700 11.32103 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035303 B = 0.003122 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.947032 B = 8967.712569 C = 9312.322626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.102 4.102 3 H 0.080 0.920 4 C 0.046 3.954 5 O -0.385 6.385 6 C 0.058 3.942 7 C -0.145 4.145 8 C -0.108 4.108 9 H 0.097 0.903 10 C 0.520 3.480 11 O -0.529 6.529 12 N -0.696 5.696 13 C 0.096 3.904 14 H 0.131 0.869 15 C -0.181 4.181 16 H 0.101 0.899 17 C 0.186 3.814 18 N -0.593 5.593 19 C -0.230 4.230 20 H 0.077 0.923 21 C -0.004 4.004 22 N -0.914 5.914 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.156 3.844 28 C -0.183 4.183 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.397 0.603 40 H 0.089 0.911 41 H 0.026 0.974 42 H 0.255 0.745 43 H 0.027 0.973 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.912 17.061 -5.467 20.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.121 4.121 3 H 0.098 0.902 4 C -0.030 4.030 5 O -0.304 6.304 6 C -0.019 4.019 7 C -0.183 4.183 8 C -0.130 4.130 9 H 0.115 0.885 10 C 0.307 3.693 11 O -0.406 6.406 12 N -0.344 5.344 13 C -0.009 4.009 14 H 0.149 0.851 15 C -0.203 4.203 16 H 0.119 0.881 17 C 0.060 3.940 18 N -0.316 5.316 19 C -0.358 4.358 20 H 0.095 0.905 21 C -0.202 4.202 22 N -0.560 5.560 23 Si 0.743 3.257 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.029 3.971 28 C -0.204 4.204 29 H 0.120 0.880 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.231 0.769 40 H 0.108 0.892 41 H 0.044 0.956 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.411 16.630 -6.219 20.583 hybrid contribution -0.185 -0.401 1.544 1.606 sum 10.226 16.229 -4.676 19.744 Atomic orbital electron populations 1.21947 0.93891 1.04195 1.01444 1.21527 0.97020 0.99225 0.94299 0.90215 1.23096 0.80248 1.02893 0.96740 1.87879 1.21136 1.76157 1.45214 1.22552 0.99009 0.95053 0.85282 1.22180 0.93499 1.03055 0.99585 1.21492 0.96603 0.93826 1.01070 0.88461 1.20505 0.78968 0.87080 0.82731 1.90582 1.43263 1.72719 1.34085 1.45457 1.58974 1.14902 1.15077 1.21854 1.00927 0.81341 0.96815 0.85098 1.24728 0.95693 1.01310 0.98520 0.88105 1.21031 0.91994 0.81288 0.99697 1.45182 1.09309 1.18502 1.58634 1.18997 0.91590 1.00454 1.24722 0.90507 1.24913 0.95614 0.99287 1.00359 1.69909 0.99037 1.43005 1.44026 0.86103 0.77647 0.81154 0.80749 1.21498 1.21614 1.20505 1.21104 0.90566 0.89660 0.95726 1.24322 0.97321 0.95763 1.03019 0.87955 0.90036 0.92577 0.92891 0.89139 0.89483 0.92891 0.88793 0.90338 0.89876 0.76883 0.89238 0.95570 0.93500 0.95527 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 8.77 37.16 0.33 -1.30 16 2 C -0.10 -1.01 2.67 -90.48 -0.24 -1.25 16 3 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 4 C 0.05 0.53 5.86 37.21 0.22 0.75 16 5 O -0.39 -4.68 10.77 -35.23 -0.38 -5.06 16 6 C 0.06 0.59 6.62 37.21 0.25 0.83 16 7 C -0.15 -1.18 5.62 -26.58 -0.15 -1.33 16 8 C -0.11 -1.03 2.61 -91.58 -0.24 -1.27 16 9 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 10 C 0.52 6.64 5.38 -10.98 -0.06 6.58 16 11 O -0.53 -8.50 11.11 5.56 0.06 -8.44 16 12 N -0.70 -8.69 5.56 -53.80 -0.30 -8.99 16 13 C 0.10 1.56 5.97 -67.93 -0.41 1.16 16 14 H 0.13 2.44 7.40 -51.93 -0.38 2.05 16 15 C -0.18 -3.37 7.06 -89.22 -0.63 -4.00 16 16 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 17 C 0.19 4.46 5.69 -2.41 -0.01 4.45 16 18 N -0.59 -15.10 3.38 -168.87 -0.57 -15.67 16 19 C -0.23 -6.36 10.35 -15.06 -0.16 -6.51 16 20 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 21 C 0.00 -0.12 5.39 -17.43 -0.09 -0.22 16 22 N -0.91 -26.71 10.90 55.49 0.60 -26.10 16 23 Si 0.91 21.78 29.56 -169.99 -5.03 16.76 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 C 0.16 3.24 7.04 -2.41 -0.02 3.22 16 28 C -0.18 -3.13 7.06 -89.22 -0.63 -3.76 16 29 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 30 H 0.08 1.06 5.90 -51.93 -0.31 0.75 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 1.26 5.40 -51.93 -0.28 0.98 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.63 7.38 -51.93 -0.38 0.24 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.40 3.86 8.83 -40.82 -0.36 3.50 16 40 H 0.09 2.39 6.55 -51.93 -0.34 2.05 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 342.14 15.07 5.16 5.16 Total: -1.00 -31.32 342.14 -9.39 -40.71 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -7.10 Total: 4.28 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -1.84 Total: -2.64 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.27 Total: -50.76 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.32 Total: -13.50 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.32 -9.39 -40.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026021177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.123 kcal (2) G-P(sol) polarization free energy of solvation -31.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds