Wall clock time and date at job start Tue Mar 31 2020 07:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.52302 * 2 1 4 4 C 1.53093 * 109.52218 * 239.87578 * 2 1 3 5 5 O 1.42903 * 109.41861 * 182.48875 * 4 2 1 6 6 C 1.42901 * 114.09596 * 61.15868 * 5 4 2 7 7 C 1.53094 * 109.41589 * 298.84270 * 6 5 4 8 8 C 1.53175 * 109.52115 * 120.12979 * 2 1 3 9 9 H 1.09000 * 109.54187 * 296.75100 * 8 2 1 10 10 C 1.50706 * 109.54345 * 57.01948 * 8 2 1 11 11 O 1.21273 * 120.00039 * 12.28108 * 10 8 2 12 12 N 1.34782 * 119.99822 * 192.29071 * 10 8 2 13 13 C 1.46500 * 120.00019 * 179.97438 * 12 10 8 14 14 H 1.09002 * 115.51468 * 9.57712 * 13 12 10 15 15 C 1.53000 * 117.44181 * 224.23619 * 13 12 10 16 16 H 1.08998 * 119.53758 * 4.11897 * 15 13 12 17 17 C 1.54383 * 118.12246 * 160.80461 * 15 13 12 18 18 N 1.48147 * 104.61488 * 87.19205 * 17 15 13 19 19 C 1.36943 * 127.83713 * 140.39247 * 18 17 15 20 20 H 1.08000 * 119.99935 * 195.92416 * 19 18 17 21 21 C 1.38806 * 119.99999 * 15.93181 * 19 18 17 22 22 N 1.31626 * 120.00015 * 9.38606 * 21 19 18 23 23 Si 1.86801 * 120.00134 * 189.38508 * 21 19 18 24 24 H 1.48500 * 109.47049 * 89.99586 * 23 21 19 25 25 H 1.48499 * 109.47108 * 210.00107 * 23 21 19 26 26 H 1.48499 * 109.46987 * 330.00030 * 23 21 19 27 27 C 1.48147 * 104.32622 * 320.41260 * 18 17 15 28 28 C 1.52997 * 117.44424 * 154.99639 * 13 12 10 29 29 H 1.09004 * 119.53593 * 355.88005 * 28 13 12 30 30 H 1.09000 * 109.47693 * 174.42983 * 1 2 3 31 31 H 1.09001 * 109.46769 * 54.43178 * 1 2 3 32 32 H 1.09000 * 109.47508 * 294.43454 * 1 2 3 33 33 H 1.09004 * 109.48120 * 302.47227 * 4 2 1 34 34 H 1.09003 * 109.47990 * 62.50245 * 4 2 1 35 35 H 1.08998 * 109.48442 * 58.82476 * 6 5 4 36 36 H 1.09001 * 109.47854 * 178.86273 * 6 5 4 37 37 H 1.08993 * 109.52557 * 177.51491 * 7 6 5 38 38 H 1.09000 * 109.52351 * 297.70845 * 7 6 5 39 39 H 0.96998 * 119.99588 * 359.97438 * 12 10 8 40 40 H 1.08995 * 110.40916 * 205.97498 * 17 15 13 41 41 H 1.09003 * 110.41208 * 328.40857 * 17 15 13 42 42 H 0.97001 * 119.99614 * 180.02562 * 22 21 19 43 43 H 1.08997 * 110.40678 * 280.80508 * 27 18 17 44 44 H 1.08995 * 110.41038 * 158.36716 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0416 -0.7242 -1.2480 5 8 3.4694 -0.7737 -1.2168 6 6 4.0042 -1.4817 -0.0967 7 6 3.5716 -0.7880 1.1977 8 6 2.0418 -0.7247 1.2486 9 1 1.7279 -0.1814 2.1399 10 6 1.4816 -2.1233 1.2850 11 8 0.9335 -2.5826 0.3056 12 7 1.5896 -2.8635 2.4062 13 6 1.0445 -4.2229 2.4418 14 1 0.7151 -4.6219 1.4824 15 6 0.2514 -4.6322 3.6845 16 1 0.0575 -3.8962 4.4648 17 6 -0.6956 -5.8466 3.5760 18 7 0.1611 -7.0169 3.8779 19 6 -0.1607 -8.1261 4.6138 20 1 0.6194 -8.7808 4.9732 21 6 -1.4897 -8.4090 4.8976 22 7 -2.4483 -7.7238 4.3109 23 14 -1.9178 -9.7623 6.1121 24 1 -2.0059 -9.1903 7.4797 25 1 -3.2238 -10.3644 5.7421 26 1 -0.8638 -10.8079 6.0799 27 6 1.4452 -6.7149 3.2037 28 6 1.6629 -5.2047 3.4390 29 1 2.5205 -4.8951 4.0364 30 1 -0.3634 -1.0228 -0.0997 31 1 -0.3633 0.5978 -0.8359 32 1 -0.3634 0.4251 0.9356 33 1 1.6430 -1.7385 -1.2687 34 1 1.7158 -0.1873 -2.1390 35 1 3.6314 -2.5060 -0.1022 36 1 5.0925 -1.4905 -0.1581 37 1 3.9415 -1.3514 2.0542 38 1 3.9780 0.2231 1.2225 39 1 2.0281 -2.4961 3.1895 40 1 -1.5011 -5.7669 4.3060 41 1 -1.1018 -5.9230 2.5674 42 1 -3.3769 -7.9214 4.5096 43 1 1.3734 -6.9268 2.1369 44 1 2.2548 -7.2901 3.6527 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026021177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:49 Heat of formation + Delta-G solvation = -47.793813 kcal Electronic energy + Delta-G solvation = -24390.743051 eV Core-core repulsion = 20922.777206 eV Total energy + Delta-G solvation = -3467.965845 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.91130 -40.45448 -38.89441 -36.15010 -35.27118 -34.49477 -33.08359 -31.92950 -28.94852 -28.16095 -27.55720 -26.47729 -23.95601 -23.32316 -22.45546 -21.92881 -20.91849 -20.50869 -18.87809 -17.87818 -17.60213 -17.13683 -17.06221 -16.72942 -16.23191 -15.73241 -15.44263 -15.38657 -14.90364 -14.73746 -14.64824 -14.05191 -13.76443 -13.49981 -13.36467 -13.31165 -13.17959 -12.91474 -12.87339 -12.72356 -12.51809 -12.14974 -12.05005 -12.01290 -11.87582 -11.69811 -11.56606 -11.44356 -10.85535 -10.76865 -10.64193 -10.14015 -9.68197 -8.94536 -7.93609 -5.31108 1.46166 1.48082 1.53685 1.57295 1.96825 2.47459 2.83453 2.98122 3.26878 3.49178 3.59436 3.69013 3.75058 3.84108 3.92182 3.97670 4.11013 4.14543 4.32644 4.36523 4.49697 4.51648 4.57531 4.69197 4.74111 4.77850 4.81840 4.86349 4.90854 4.97231 4.99459 5.10427 5.13151 5.24315 5.26608 5.39103 5.42221 5.47738 5.59445 5.62104 6.14413 6.26904 6.54236 6.97912 7.26973 7.65310 8.43651 9.20391 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035303 B = 0.003122 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.947032 B = 8967.712569 C = 9312.322626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.099 4.099 3 H 0.103 0.897 4 C 0.045 3.955 5 O -0.400 6.400 6 C 0.050 3.950 7 C -0.138 4.138 8 C -0.102 4.102 9 H 0.128 0.872 10 C 0.516 3.484 11 O -0.566 6.566 12 N -0.683 5.683 13 C 0.121 3.879 14 H 0.102 0.898 15 C -0.187 4.187 16 H 0.122 0.878 17 C 0.190 3.810 18 N -0.617 5.617 19 C -0.243 4.243 20 H 0.084 0.916 21 C -0.063 4.063 22 N -0.949 5.949 23 Si 0.983 3.017 24 H -0.283 1.283 25 H -0.296 1.296 26 H -0.266 1.266 27 C 0.148 3.852 28 C -0.159 4.159 29 H 0.142 0.858 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.027 0.973 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.417 0.583 40 H 0.055 0.945 41 H -0.008 1.008 42 H 0.250 0.750 43 H 0.017 0.983 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.363 19.132 -3.923 23.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.118 4.118 3 H 0.121 0.879 4 C -0.031 4.031 5 O -0.319 6.319 6 C -0.027 4.027 7 C -0.175 4.175 8 C -0.124 4.124 9 H 0.146 0.854 10 C 0.305 3.695 11 O -0.445 6.445 12 N -0.333 5.333 13 C 0.013 3.987 14 H 0.120 0.880 15 C -0.209 4.209 16 H 0.140 0.860 17 C 0.064 3.936 18 N -0.341 5.341 19 C -0.372 4.372 20 H 0.102 0.898 21 C -0.256 4.256 22 N -0.596 5.596 23 Si 0.810 3.190 24 H -0.210 1.210 25 H -0.222 1.222 26 H -0.190 1.190 27 C 0.022 3.978 28 C -0.179 4.179 29 H 0.159 0.841 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.046 0.954 36 H 0.131 0.869 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.254 0.746 40 H 0.073 0.927 41 H 0.010 0.990 42 H 0.059 0.941 43 H 0.035 0.965 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.919 18.732 -4.667 23.228 hybrid contribution -0.931 -1.067 0.922 1.689 sum 11.988 17.665 -3.745 21.675 Atomic orbital electron populations 1.21898 0.94466 1.02340 1.02525 1.21537 0.96472 1.00129 0.93637 0.87889 1.23038 0.80222 1.01567 0.98281 1.87856 1.21183 1.76311 1.46522 1.22733 1.00022 0.93880 0.86047 1.22199 0.92085 1.04393 0.98868 1.21577 0.97554 0.91156 1.02063 0.85387 1.21266 0.78121 0.88263 0.81880 1.90606 1.44728 1.73698 1.35497 1.45262 1.58783 1.13112 1.16115 1.21317 0.99515 0.83300 0.94532 0.88034 1.24391 0.95102 1.00424 1.00962 0.86026 1.20731 0.92468 0.83820 0.96551 1.45496 1.11052 1.18590 1.59004 1.19426 0.92016 1.01181 1.24556 0.89782 1.25794 0.95557 1.01923 1.02363 1.70121 0.98990 1.44814 1.45712 0.85020 0.77120 0.78537 0.78287 1.20952 1.22236 1.19039 1.21262 0.89054 0.92629 0.94844 1.24223 0.97346 0.93244 1.03132 0.84070 0.93316 0.91601 0.91710 0.92202 0.88801 0.95448 0.86878 0.88258 0.87633 0.74554 0.92666 0.99027 0.94122 0.96515 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 8.77 71.98 0.63 -2.37 16 2 C -0.10 -1.73 2.67 -10.71 -0.03 -1.76 16 3 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 4 C 0.05 1.02 5.86 72.01 0.42 1.44 16 5 O -0.40 -9.18 10.77 -148.98 -1.60 -10.78 16 6 C 0.05 0.91 6.62 72.01 0.48 1.38 16 7 C -0.14 -1.68 5.62 30.69 0.17 -1.50 16 8 C -0.10 -1.60 2.61 -11.42 -0.03 -1.63 16 9 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 10 C 0.52 12.37 5.38 87.66 0.47 12.84 16 11 O -0.57 -18.54 11.11 -3.01 -0.03 -18.58 16 12 N -0.68 -15.33 5.56 -442.53 -2.46 -17.79 16 13 C 0.12 3.81 5.97 44.99 0.27 4.08 16 14 H 0.10 3.91 7.40 -2.39 -0.02 3.90 16 15 C -0.19 -6.87 7.06 -9.89 -0.07 -6.94 16 16 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 17 C 0.19 9.55 5.69 86.53 0.49 10.05 16 18 N -0.62 -32.13 3.38 -688.17 -2.32 -34.46 16 19 C -0.24 -13.66 10.35 84.03 0.87 -12.79 16 20 H 0.08 4.47 7.85 -2.91 -0.02 4.45 16 21 C -0.06 -3.57 5.39 84.86 0.46 -3.12 16 22 N -0.95 -57.77 10.90 21.65 0.24 -57.53 16 23 Si 0.98 45.42 29.56 68.60 2.03 47.45 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 25 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 27 C 0.15 6.08 7.04 86.53 0.61 6.69 16 28 C -0.16 -5.11 7.06 -9.89 -0.07 -5.18 16 29 H 0.14 3.54 8.14 -2.38 -0.02 3.52 16 30 H 0.05 1.28 5.90 -2.39 -0.01 1.27 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.73 5.40 -2.39 -0.01 1.72 16 34 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.03 0.63 7.38 -2.39 -0.02 0.61 16 36 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.42 6.26 8.83 -92.71 -0.82 5.45 16 40 H 0.05 3.12 6.55 -2.39 -0.02 3.10 16 41 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 42 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 43 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -72.57 342.14 0.69 -71.88 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.18 Total: 18.62 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 4.67 Total: 1.19 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -4.55 Total: -109.78 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -1.64 Total: -29.36 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -72.57 0.69 -71.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026021177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.084 kcal (2) G-P(sol) polarization free energy of solvation -72.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds