Wall clock time and date at job start Tue Mar 31 2020 07:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47079 * 2 1 4 4 C 1.50708 * 109.46755 * 119.99856 * 2 1 3 5 5 O 1.21285 * 119.99964 * 120.00305 * 4 2 1 6 6 N 1.34772 * 120.00003 * 300.27500 * 4 2 1 7 7 C 1.46495 * 119.99932 * 179.72302 * 6 4 2 8 8 H 1.09003 * 115.51742 * 350.42320 * 7 6 4 9 9 C 1.53000 * 117.44274 * 204.99869 * 7 6 4 10 10 H 1.08995 * 119.54481 * 4.12283 * 9 7 6 11 11 C 1.54398 * 118.12038 * 159.21317 * 9 7 6 12 12 N 1.48151 * 104.61518 * 87.19282 * 11 9 7 13 13 C 1.36938 * 127.83494 * 140.41111 * 12 11 9 14 14 H 1.07996 * 119.99742 * 195.57009 * 13 12 11 15 15 C 1.38810 * 119.99919 * 15.57462 * 13 12 11 16 16 N 1.31614 * 120.00156 * 9.10108 * 15 13 12 17 17 Si 1.86803 * 119.99684 * 189.09802 * 15 13 12 18 18 H 1.48497 * 109.47421 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46786 * 120.00227 * 17 15 13 20 20 H 1.48505 * 109.47138 * 239.99825 * 17 15 13 21 21 C 1.48142 * 104.32281 * 320.41514 * 12 11 9 22 22 C 1.53011 * 117.44055 * 135.76048 * 7 6 4 23 23 H 1.08996 * 119.53846 * 355.88365 * 22 7 6 24 24 C 1.52998 * 109.47449 * 239.99950 * 2 1 3 25 25 H 1.09001 * 109.82302 * 185.57506 * 24 2 1 26 26 C 1.54380 * 109.83251 * 64.58575 * 24 2 1 27 27 C 1.55298 * 102.25418 * 219.13246 * 26 24 2 28 28 C 1.54945 * 100.94524 * 34.13500 * 27 26 24 29 29 O 1.43242 * 109.82992 * 306.45444 * 24 2 1 30 30 H 1.09005 * 109.46678 * 60.00150 * 1 2 3 31 31 H 1.09001 * 109.47079 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47520 * 300.00361 * 1 2 3 33 33 H 0.96999 * 120.00127 * 359.72355 * 6 4 2 34 34 H 1.09001 * 110.40379 * 205.97324 * 11 9 7 35 35 H 1.08996 * 110.40962 * 328.41201 * 11 9 7 36 36 H 0.97005 * 120.00124 * 180.02562 * 16 15 13 37 37 H 1.09002 * 110.40682 * 158.37209 * 21 12 11 38 38 H 1.09000 * 110.40842 * 280.67851 * 21 12 11 39 39 H 1.08997 * 110.84420 * 337.32654 * 26 24 2 40 40 H 1.09005 * 110.84172 * 100.94178 * 26 24 2 41 41 H 1.09004 * 111.12373 * 276.21465 * 27 26 24 42 42 H 1.09001 * 111.12198 * 152.05568 * 27 26 24 43 43 H 1.08995 * 110.31123 * 204.63839 * 28 27 26 44 44 H 1.08999 * 110.30882 * 82.47069 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7296 -1.6965 1.1193 6 7 1.7021 -0.2532 2.4546 7 6 2.1853 -0.9473 3.6507 8 1 2.6657 -1.9096 3.4734 9 6 1.3667 -0.7937 4.9342 10 1 0.4280 -0.2403 4.9099 11 6 1.5432 -1.8553 6.0413 12 7 2.6860 -1.3676 6.8481 13 6 2.8299 -1.4052 8.2094 14 1 3.5844 -0.7997 8.6895 15 6 2.0062 -2.2216 8.9721 16 7 1.2121 -3.0900 8.3826 17 14 2.0249 -2.0878 10.8352 18 1 2.9977 -1.0441 11.2469 19 1 0.6696 -1.7204 11.3187 20 1 2.4225 -3.3931 11.4213 21 6 3.6376 -0.8300 5.8481 22 6 2.7312 -0.0876 4.7927 23 1 2.8089 0.9918 4.6629 24 6 2.0401 -0.7212 -1.2492 25 1 3.1255 -0.8116 -1.2065 26 6 1.6271 0.0639 -2.5126 27 6 1.2541 -1.0745 -3.5009 28 6 0.6557 -2.1229 -2.5296 29 8 1.4472 -2.0224 -1.3352 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.1444 0.5355 2.5436 34 1 0.6442 -1.9179 6.6546 35 1 1.7741 -2.8264 5.6035 36 1 0.6361 -3.6603 8.9156 37 1 4.3189 -0.1191 6.3156 38 1 4.1971 -1.6408 5.3816 39 1 0.7652 0.6995 -2.3098 40 1 2.4623 0.6511 -2.8946 41 1 2.1395 -1.4645 -4.0031 42 1 0.5104 -0.7391 -4.2238 43 1 0.7380 -3.1231 -2.9550 44 1 -0.3865 -1.8873 -2.3139 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026027299.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:42 Heat of formation + Delta-G solvation = -24.563555 kcal Electronic energy + Delta-G solvation = -23843.088058 eV Core-core repulsion = 20376.129553 eV Total energy + Delta-G solvation = -3466.958506 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.46884 -39.20252 -38.00486 -34.41262 -33.86533 -32.44320 -32.14332 -30.18004 -28.45469 -26.97974 -25.76339 -24.86572 -22.62062 -21.88867 -20.97554 -20.38472 -19.54192 -19.24011 -17.18261 -16.95839 -16.74740 -16.37146 -15.87693 -15.03714 -14.83884 -14.60980 -14.29417 -13.66885 -13.60635 -13.43429 -13.18047 -12.71060 -12.49066 -12.30325 -12.12657 -12.02246 -11.82478 -11.52222 -11.44593 -11.31614 -11.27435 -10.99824 -10.94905 -10.83356 -10.30584 -10.14566 -10.10382 -9.72193 -9.65005 -9.52198 -9.14925 -8.71487 -8.23682 -6.84734 -5.77923 -3.12198 2.78009 3.19167 3.39241 3.44922 3.47587 3.67698 4.15753 4.35605 4.40533 4.48489 4.58789 4.64976 4.81431 4.84241 4.98141 5.09940 5.23153 5.30317 5.34027 5.39682 5.41399 5.45199 5.49325 5.57686 5.61386 5.65764 5.67685 5.77793 5.83398 5.90679 6.03724 6.20843 6.32802 6.55767 6.72272 6.89431 6.92674 6.95001 7.38657 7.55999 7.69218 7.73964 8.22350 8.43337 9.12687 9.75467 10.52916 11.36474 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.044075 B = 0.002710 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.132517 B =10327.955018 C =10478.011081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 H 0.103 0.897 4 C 0.520 3.480 5 O -0.525 6.525 6 N -0.701 5.701 7 C 0.096 3.904 8 H 0.130 0.870 9 C -0.180 4.180 10 H 0.100 0.900 11 C 0.185 3.815 12 N -0.594 5.594 13 C -0.226 4.226 14 H 0.077 0.923 15 C -0.006 4.006 16 N -0.914 5.914 17 Si 0.913 3.087 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.290 1.290 21 C 0.158 3.842 22 C -0.187 4.187 23 H 0.105 0.895 24 C 0.101 3.899 25 H 0.087 0.913 26 C -0.155 4.155 27 C -0.156 4.156 28 C 0.045 3.955 29 O -0.356 6.356 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.396 0.604 34 H 0.091 0.909 35 H 0.026 0.974 36 H 0.254 0.746 37 H 0.049 0.951 38 H 0.031 0.969 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.976 9.413 -23.247 25.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 H 0.121 0.879 4 C 0.306 3.694 5 O -0.399 6.399 6 N -0.350 5.350 7 C -0.010 4.010 8 H 0.148 0.852 9 C -0.202 4.202 10 H 0.118 0.882 11 C 0.059 3.941 12 N -0.317 5.317 13 C -0.354 4.354 14 H 0.095 0.905 15 C -0.204 4.204 16 N -0.561 5.561 17 Si 0.743 3.257 18 H -0.204 1.204 19 H -0.216 1.216 20 H -0.217 1.217 21 C 0.031 3.969 22 C -0.208 4.208 23 H 0.123 0.877 24 C 0.043 3.957 25 H 0.105 0.895 26 C -0.192 4.192 27 C -0.193 4.193 28 C -0.032 4.032 29 O -0.275 6.275 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.230 0.770 34 H 0.109 0.891 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.048 0.952 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.515 8.395 -22.924 24.542 hybrid contribution -0.494 0.808 0.839 1.265 sum -3.009 9.202 -22.085 24.114 Atomic orbital electron populations 1.21775 0.92615 1.03527 1.02229 1.21750 0.98357 1.00477 0.93862 0.87911 1.20371 0.80256 0.84718 0.84089 1.90730 1.37269 1.25512 1.86428 1.45415 1.53069 1.31394 1.05078 1.21862 1.01832 0.97552 0.79753 0.85196 1.24615 0.94603 1.04250 0.96700 0.88236 1.21066 0.93759 0.90885 0.88358 1.45134 1.15100 1.70081 1.01351 1.19035 1.17134 1.19627 0.79610 0.90481 1.24909 1.00262 0.96867 0.98318 1.69911 1.28437 1.23868 1.33850 0.86037 0.77352 0.77341 0.84955 1.20375 1.21644 1.21674 1.21689 0.91351 0.94946 0.88958 1.25085 0.98767 0.97838 0.99158 0.87679 1.22478 0.98172 0.82964 0.92095 0.89485 1.23275 1.02597 0.98483 0.94875 1.23256 1.01784 0.96003 0.98293 1.23414 0.95009 0.99602 0.85182 1.88635 1.65681 1.31249 1.41902 0.91670 0.91160 0.92010 0.77049 0.89126 0.95602 0.93587 0.93218 0.95178 0.89978 0.89920 0.90350 0.90067 0.89895 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.62 37.16 0.32 -0.90 16 2 C -0.12 -1.23 2.55 -91.77 -0.23 -1.46 16 3 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.52 7.62 7.05 -10.98 -0.08 7.54 16 5 O -0.52 -10.10 15.05 -6.86 -0.10 -10.20 16 6 N -0.70 -9.80 5.45 -53.80 -0.29 -10.10 16 7 C 0.10 1.69 5.92 -67.93 -0.40 1.29 16 8 H 0.13 2.65 7.40 -51.93 -0.38 2.27 16 9 C -0.18 -3.50 6.98 -89.21 -0.62 -4.12 16 10 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 11 C 0.19 4.57 5.70 -2.40 -0.01 4.56 16 12 N -0.59 -15.51 3.38 -166.73 -0.56 -16.08 16 13 C -0.23 -6.37 10.35 -15.06 -0.16 -6.53 16 14 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 15 C -0.01 -0.18 5.40 -17.43 -0.09 -0.28 16 16 N -0.91 -27.11 10.86 55.49 0.60 -26.51 16 17 Si 0.91 22.10 29.56 -169.99 -5.03 17.07 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 21 C 0.16 3.43 7.09 -0.57 0.00 3.42 16 22 C -0.19 -3.42 7.34 -87.37 -0.64 -4.06 16 23 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 24 C 0.10 1.06 2.74 -26.01 -0.07 0.99 16 25 H 0.09 1.02 7.95 -51.93 -0.41 0.61 16 26 C -0.15 -1.03 6.36 -24.79 -0.16 -1.19 16 27 C -0.16 -1.00 7.15 -24.49 -0.18 -1.18 16 28 C 0.04 0.39 7.71 38.18 0.29 0.68 16 29 O -0.36 -4.60 9.46 -47.65 -0.45 -5.05 16 30 H 0.06 0.41 6.35 -51.93 -0.33 0.08 16 31 H 0.07 0.74 7.54 -51.93 -0.39 0.35 16 32 H 0.06 0.47 7.55 -51.93 -0.39 0.07 16 33 H 0.40 4.33 8.24 -40.82 -0.34 3.99 16 34 H 0.09 2.47 6.51 -51.93 -0.34 2.13 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.45 6.07 -51.93 -0.32 0.14 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 349.40 15.07 5.27 5.27 Total: -1.00 -33.90 349.40 -9.70 -43.60 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.10 Total: 3.23 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -2.03 Total: -1.23 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.25 Total: -52.68 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.55 Total: -15.25 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.90 -9.70 -43.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026027299.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.033 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds