Wall clock time and date at job start Tue Mar 31 2020 07:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47079 * 2 1 4 4 C 1.50708 * 109.46755 * 119.99856 * 2 1 3 5 5 O 1.21285 * 119.99964 * 120.00305 * 4 2 1 6 6 N 1.34772 * 120.00003 * 300.27500 * 4 2 1 7 7 C 1.46495 * 119.99932 * 179.72302 * 6 4 2 8 8 H 1.09003 * 115.51742 * 350.42320 * 7 6 4 9 9 C 1.53000 * 117.44274 * 204.99869 * 7 6 4 10 10 H 1.08995 * 119.54481 * 4.12283 * 9 7 6 11 11 C 1.54398 * 118.12038 * 159.21317 * 9 7 6 12 12 N 1.48151 * 104.61518 * 87.19282 * 11 9 7 13 13 C 1.36938 * 127.83494 * 140.41111 * 12 11 9 14 14 H 1.07996 * 119.99742 * 195.57009 * 13 12 11 15 15 C 1.38810 * 119.99919 * 15.57462 * 13 12 11 16 16 N 1.31614 * 120.00156 * 9.10108 * 15 13 12 17 17 Si 1.86803 * 119.99684 * 189.09802 * 15 13 12 18 18 H 1.48497 * 109.47421 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46786 * 120.00227 * 17 15 13 20 20 H 1.48505 * 109.47138 * 239.99825 * 17 15 13 21 21 C 1.48142 * 104.32281 * 320.41514 * 12 11 9 22 22 C 1.53011 * 117.44055 * 135.76048 * 7 6 4 23 23 H 1.08996 * 119.53846 * 355.88365 * 22 7 6 24 24 C 1.52998 * 109.47449 * 239.99950 * 2 1 3 25 25 H 1.09001 * 109.82302 * 185.57506 * 24 2 1 26 26 C 1.54380 * 109.83251 * 64.58575 * 24 2 1 27 27 C 1.55298 * 102.25418 * 219.13246 * 26 24 2 28 28 C 1.54945 * 100.94524 * 34.13500 * 27 26 24 29 29 O 1.43242 * 109.82992 * 306.45444 * 24 2 1 30 30 H 1.09005 * 109.46678 * 60.00150 * 1 2 3 31 31 H 1.09001 * 109.47079 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47520 * 300.00361 * 1 2 3 33 33 H 0.96999 * 120.00127 * 359.72355 * 6 4 2 34 34 H 1.09001 * 110.40379 * 205.97324 * 11 9 7 35 35 H 1.08996 * 110.40962 * 328.41201 * 11 9 7 36 36 H 0.97005 * 120.00124 * 180.02562 * 16 15 13 37 37 H 1.09002 * 110.40682 * 158.37209 * 21 12 11 38 38 H 1.09000 * 110.40842 * 280.67851 * 21 12 11 39 39 H 1.08997 * 110.84420 * 337.32654 * 26 24 2 40 40 H 1.09005 * 110.84172 * 100.94178 * 26 24 2 41 41 H 1.09004 * 111.12373 * 276.21465 * 27 26 24 42 42 H 1.09001 * 111.12198 * 152.05568 * 27 26 24 43 43 H 1.08995 * 110.31123 * 204.63839 * 28 27 26 44 44 H 1.08999 * 110.30882 * 82.47069 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7296 -1.6965 1.1193 6 7 1.7021 -0.2532 2.4546 7 6 2.1853 -0.9473 3.6507 8 1 2.6657 -1.9096 3.4734 9 6 1.3667 -0.7937 4.9342 10 1 0.4280 -0.2403 4.9099 11 6 1.5432 -1.8553 6.0413 12 7 2.6860 -1.3676 6.8481 13 6 2.8299 -1.4052 8.2094 14 1 3.5844 -0.7997 8.6895 15 6 2.0062 -2.2216 8.9721 16 7 1.2121 -3.0900 8.3826 17 14 2.0249 -2.0878 10.8352 18 1 2.9977 -1.0441 11.2469 19 1 0.6696 -1.7204 11.3187 20 1 2.4225 -3.3931 11.4213 21 6 3.6376 -0.8300 5.8481 22 6 2.7312 -0.0876 4.7927 23 1 2.8089 0.9918 4.6629 24 6 2.0401 -0.7212 -1.2492 25 1 3.1255 -0.8116 -1.2065 26 6 1.6271 0.0639 -2.5126 27 6 1.2541 -1.0745 -3.5009 28 6 0.6557 -2.1229 -2.5296 29 8 1.4472 -2.0224 -1.3352 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.1444 0.5355 2.5436 34 1 0.6442 -1.9179 6.6546 35 1 1.7741 -2.8264 5.6035 36 1 0.6361 -3.6603 8.9156 37 1 4.3189 -0.1191 6.3156 38 1 4.1971 -1.6408 5.3816 39 1 0.7652 0.6995 -2.3098 40 1 2.4623 0.6511 -2.8946 41 1 2.1395 -1.4645 -4.0031 42 1 0.5104 -0.7391 -4.2238 43 1 0.7380 -3.1231 -2.9550 44 1 -0.3865 -1.8873 -2.3139 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026027299.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:41 Heat of formation + Delta-G solvation = -47.398804 kcal Electronic energy + Delta-G solvation = -23844.078269 eV Core-core repulsion = 20376.129553 eV Total energy + Delta-G solvation = -3467.948716 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.46968 -40.43697 -39.37748 -36.07301 -34.90992 -33.98177 -32.84103 -31.98322 -29.15510 -28.81168 -27.63250 -25.80381 -23.83207 -22.82142 -22.13361 -21.94149 -20.92627 -20.57477 -18.86734 -17.94957 -17.93005 -17.57300 -16.82691 -16.63170 -16.06726 -15.82424 -15.38892 -15.20776 -14.93015 -14.65112 -14.46749 -14.11917 -13.78810 -13.35710 -13.27521 -13.11618 -12.92932 -12.83623 -12.75276 -12.62556 -12.44965 -12.08558 -12.04258 -11.98673 -11.94846 -11.87704 -11.68344 -11.52745 -10.92738 -10.77988 -10.65402 -10.38701 -9.67157 -8.94869 -7.93147 -5.30708 1.46393 1.47344 1.58743 1.62196 2.00971 2.47680 2.86468 2.99795 3.27504 3.53191 3.59267 3.71042 3.81327 3.82631 3.95767 4.01866 4.06706 4.11140 4.20408 4.28656 4.42886 4.43930 4.50368 4.65669 4.80122 4.83439 4.85867 4.90149 4.95883 4.96900 4.97608 5.03862 5.12477 5.23577 5.26238 5.40217 5.42310 5.44397 5.56063 5.62453 6.14373 6.25252 6.58526 6.98135 7.31336 7.65103 8.43989 9.21048 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.044075 B = 0.002710 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.132517 B =10327.955018 C =10478.011081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 H 0.141 0.859 4 C 0.514 3.486 5 O -0.579 6.579 6 N -0.685 5.685 7 C 0.112 3.888 8 H 0.096 0.904 9 C -0.180 4.180 10 H 0.126 0.874 11 C 0.189 3.811 12 N -0.616 5.616 13 C -0.241 4.241 14 H 0.084 0.916 15 C -0.065 4.065 16 N -0.949 5.949 17 Si 0.984 3.016 18 H -0.263 1.263 19 H -0.288 1.288 20 H -0.293 1.293 21 C 0.148 3.852 22 C -0.163 4.163 23 H 0.143 0.857 24 C 0.091 3.909 25 H 0.062 0.938 26 C -0.143 4.143 27 C -0.149 4.149 28 C 0.034 3.966 29 O -0.398 6.398 30 H 0.095 0.905 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.417 0.583 34 H 0.060 0.940 35 H -0.009 1.009 36 H 0.250 0.750 37 H 0.064 0.936 38 H 0.018 0.982 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.673 12.886 -24.708 28.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.134 4.134 3 H 0.158 0.842 4 C 0.302 3.698 5 O -0.457 6.457 6 N -0.336 5.336 7 C 0.005 3.995 8 H 0.114 0.886 9 C -0.201 4.201 10 H 0.144 0.856 11 C 0.063 3.937 12 N -0.340 5.340 13 C -0.369 4.369 14 H 0.102 0.898 15 C -0.258 4.258 16 N -0.597 5.597 17 Si 0.812 3.188 18 H -0.187 1.187 19 H -0.215 1.215 20 H -0.220 1.220 21 C 0.022 3.978 22 C -0.184 4.184 23 H 0.161 0.839 24 C 0.033 3.967 25 H 0.080 0.920 26 C -0.181 4.181 27 C -0.187 4.187 28 C -0.042 4.042 29 O -0.318 6.318 30 H 0.114 0.886 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.254 0.746 34 H 0.078 0.922 35 H 0.009 0.991 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.036 0.964 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.093 0.907 42 H 0.125 0.875 43 H 0.097 0.903 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.216 11.924 -24.419 27.364 hybrid contribution -0.214 -0.374 1.236 1.309 sum -3.430 11.550 -23.183 26.127 Atomic orbital electron populations 1.21792 0.91007 1.02515 1.04444 1.21836 0.99427 1.01408 0.90691 0.84176 1.21379 0.79051 0.84105 0.85258 1.90716 1.39727 1.28087 1.87164 1.45234 1.53019 1.31619 1.03684 1.21362 1.00644 0.96742 0.80779 0.88581 1.24298 0.96466 1.03085 0.96240 0.85597 1.20791 0.92224 0.91317 0.89371 1.45433 1.16608 1.70379 1.01612 1.19450 1.17067 1.19447 0.80951 0.89797 1.25813 1.00207 0.96733 1.03077 1.70118 1.29348 1.24846 1.35387 0.84936 0.77481 0.77302 0.79100 1.18667 1.21508 1.22019 1.21829 0.91643 0.95105 0.89226 1.25005 0.96250 0.99248 0.97889 0.83912 1.22601 0.96873 0.82983 0.94249 0.92029 1.23267 1.03943 0.98246 0.92604 1.23249 1.02173 0.95095 0.98133 1.23615 0.95276 1.00503 0.84785 1.88600 1.66425 1.32995 1.43776 0.88614 0.93782 0.90653 0.74589 0.92186 0.99091 0.94076 0.91804 0.96432 0.87862 0.88335 0.90693 0.87543 0.90256 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.62 71.98 0.62 -1.29 16 2 C -0.11 -1.96 2.55 -11.54 -0.03 -1.99 16 3 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 4 C 0.51 14.60 7.05 87.66 0.62 15.22 16 5 O -0.58 -23.00 15.05 8.82 0.13 -22.87 16 6 N -0.68 -17.81 5.45 -442.51 -2.41 -20.23 16 7 C 0.11 3.92 5.92 45.00 0.27 4.18 16 8 H 0.10 4.11 7.40 -2.39 -0.02 4.09 16 9 C -0.18 -6.87 6.98 -9.88 -0.07 -6.94 16 10 H 0.13 4.17 8.14 -2.39 -0.02 4.15 16 11 C 0.19 9.72 5.70 86.54 0.49 10.21 16 12 N -0.62 -32.95 3.38 -681.41 -2.30 -35.25 16 13 C -0.24 -13.75 10.35 84.03 0.87 -12.88 16 14 H 0.08 4.55 7.84 -2.91 -0.02 4.53 16 15 C -0.06 -3.74 5.40 84.86 0.46 -3.29 16 16 N -0.95 -58.40 10.86 21.65 0.24 -58.17 16 17 Si 0.98 46.00 29.56 68.60 2.03 48.03 16 18 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 20 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 21 C 0.15 6.44 7.09 87.73 0.62 7.06 16 22 C -0.16 -5.66 7.34 -8.69 -0.06 -5.73 16 23 H 0.14 3.99 8.14 -2.39 -0.02 3.97 16 24 C 0.09 1.79 2.74 31.06 0.08 1.87 16 25 H 0.06 1.47 7.95 -2.39 -0.02 1.45 16 26 C -0.14 -1.43 6.36 31.85 0.20 -1.23 16 27 C -0.15 -1.55 7.15 32.05 0.23 -1.32 16 28 C 0.03 0.57 7.71 72.65 0.56 1.13 16 29 O -0.40 -10.38 9.46 -137.11 -1.30 -11.67 16 30 H 0.10 0.74 6.35 -2.38 -0.02 0.73 16 31 H 0.04 0.85 7.54 -2.39 -0.02 0.84 16 32 H 0.07 0.83 7.55 -2.39 -0.02 0.81 16 33 H 0.42 7.52 8.24 -92.71 -0.76 6.76 16 34 H 0.06 3.43 6.51 -2.39 -0.02 3.41 16 35 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 36 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 37 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.10 0.61 6.07 -2.39 -0.01 0.59 16 40 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -79.14 349.40 1.48 -77.66 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.23 Total: 17.49 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 4.86 Total: 5.01 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -4.48 Total: -113.65 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -1.16 Total: -34.54 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -79.14 1.48 -77.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026027299.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.261 kcal (2) G-P(sol) polarization free energy of solvation -79.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds