Wall clock time and date at job start Tue Mar 31 2020 07:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47469 * 2 1 4 4 C 1.50710 * 109.46779 * 240.00528 * 2 1 3 5 5 O 1.21281 * 119.99539 * 239.99559 * 4 2 1 6 6 N 1.34780 * 120.00034 * 59.99604 * 4 2 1 7 7 C 1.46494 * 120.00052 * 180.02562 * 6 4 2 8 8 H 1.09009 * 115.51478 * 9.58327 * 7 6 4 9 9 C 1.57119 * 116.92201 * 222.99259 * 7 6 4 10 10 H 1.08994 * 119.80352 * 3.77148 * 9 7 6 11 11 C 1.54795 * 118.01525 * 161.35047 * 9 7 6 12 12 N 1.48147 * 104.41932 * 86.47722 * 11 9 7 13 13 C 1.36935 * 127.83869 * 140.36541 * 12 11 9 14 14 H 1.07997 * 120.00036 * 338.36990 * 13 12 11 15 15 C 1.38808 * 119.99819 * 158.37094 * 13 12 11 16 16 N 1.31623 * 120.00165 * 335.54420 * 15 13 12 17 17 Si 1.86803 * 119.99860 * 155.54589 * 15 13 12 18 18 H 1.48497 * 109.47267 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47325 * 239.99907 * 17 15 13 20 20 H 1.48498 * 109.47089 * 120.00160 * 17 15 13 21 21 C 1.48149 * 104.32092 * 320.10003 * 12 11 9 22 22 C 1.52999 * 117.44550 * 154.99964 * 7 6 4 23 23 H 1.08996 * 119.53502 * 354.24492 * 22 7 6 24 24 C 1.52993 * 109.47619 * 120.00446 * 2 1 3 25 25 H 1.09000 * 110.33253 * 62.25017 * 24 2 1 26 26 C 1.54482 * 110.37334 * 299.99819 * 24 2 1 27 27 C 1.54511 * 104.06389 * 217.18965 * 26 24 2 28 28 C 1.54482 * 104.06074 * 359.97438 * 27 26 24 29 29 O 1.44424 * 104.80620 * 23.97919 * 28 27 26 30 30 H 1.09002 * 109.46235 * 299.99443 * 1 2 3 31 31 H 1.08997 * 109.47113 * 59.99188 * 1 2 3 32 32 H 1.08997 * 109.47073 * 180.02562 * 1 2 3 33 33 H 0.97002 * 119.99371 * 0.02562 * 6 4 2 34 34 H 1.08996 * 110.54526 * 327.72921 * 11 9 7 35 35 H 1.09007 * 110.45674 * 205.17250 * 11 9 7 36 36 H 0.96991 * 120.00119 * 354.38143 * 16 15 13 37 37 H 1.08999 * 110.40501 * 158.62855 * 21 12 11 38 38 H 1.09000 * 110.40823 * 280.95059 * 21 12 11 39 39 H 1.09002 * 110.50720 * 335.83409 * 26 24 2 40 40 H 1.08998 * 110.50793 * 98.54258 * 26 24 2 41 41 H 1.09000 * 110.51142 * 118.63891 * 27 26 24 42 42 H 1.08995 * 110.51119 * 241.35339 * 27 26 24 43 43 H 1.08997 * 110.37224 * 142.81283 * 28 27 26 44 44 H 1.08999 * 110.37217 * 265.14596 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.7296 -1.6964 -1.1194 6 7 1.7066 -0.2498 -2.4547 7 6 2.1943 -0.9406 -3.6509 8 1 2.6741 -1.9034 -3.4743 9 6 2.7285 -0.0416 -4.8235 10 1 2.7803 1.0397 -4.6968 11 6 3.6371 -0.7008 -5.8893 12 7 2.6926 -1.2660 -6.8808 13 6 2.8142 -1.2786 -8.2447 14 1 3.4609 -0.5665 -8.7357 15 6 2.1064 -2.2065 -8.9961 16 7 1.7189 -3.3389 -8.4484 17 14 1.7036 -1.8481 -10.7847 18 1 2.2466 -0.5171 -11.1572 19 1 0.2303 -1.8508 -10.9705 20 1 2.3133 -2.8913 -11.6479 21 6 1.5897 -1.8205 -6.0616 22 6 1.3805 -0.7837 -4.9370 23 1 0.4286 -0.2535 -4.9091 24 6 2.0401 -0.7213 1.2491 25 1 1.7177 -1.7625 1.2434 26 6 1.5368 -0.0095 2.5244 27 6 2.7233 -0.1182 3.5082 28 6 3.8028 -0.8834 2.7110 29 8 3.4799 -0.6399 1.3246 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.1492 0.5391 -2.5435 34 1 4.2383 -1.4927 -5.4425 35 1 4.2783 0.0459 -6.3579 36 1 1.9970 -3.5614 -7.5463 37 1 0.6843 -1.9195 -6.6604 38 1 1.8752 -2.7855 -5.6430 39 1 1.3096 1.0357 2.3140 40 1 0.6604 -0.5186 2.9253 41 1 3.0827 0.8732 3.7840 42 1 2.4334 -0.6810 4.3954 43 1 4.7939 -0.4939 2.9438 44 1 3.7522 -1.9498 2.9308 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026027300.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:44 Heat of formation + Delta-G solvation = -30.371091 kcal Electronic energy + Delta-G solvation = -23750.754671 eV Core-core repulsion = 20283.544331 eV Total energy + Delta-G solvation = -3467.210339 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.39930 -39.22481 -38.17496 -34.60158 -34.27318 -32.61694 -32.11808 -30.05689 -28.18801 -27.31390 -25.64057 -24.82516 -22.89415 -21.80200 -20.95913 -20.44548 -19.81491 -19.34661 -17.46018 -17.39463 -16.70780 -16.12032 -15.91547 -15.71511 -14.68358 -14.31701 -14.01459 -13.90877 -13.71133 -13.56370 -13.43863 -13.10765 -12.69349 -12.43072 -12.23715 -11.97497 -11.96366 -11.78334 -11.53506 -11.39195 -11.32193 -10.91745 -10.74970 -10.65950 -10.53083 -10.21941 -10.06962 -9.90275 -9.69025 -9.63956 -9.22808 -8.54342 -8.30130 -6.98438 -6.12725 -3.18763 2.66728 3.07235 3.50636 3.54469 3.60892 3.67420 4.16180 4.21740 4.33358 4.55775 4.58891 4.61427 4.68022 4.86355 4.96838 4.99530 5.07376 5.19839 5.28787 5.32057 5.35288 5.35852 5.41132 5.43986 5.51978 5.54468 5.68195 5.73479 5.75369 5.82490 5.83300 5.94405 6.18124 6.40963 6.63693 6.67555 6.74416 6.79002 6.97754 6.99997 7.57995 7.75763 8.32099 8.45299 8.97923 9.78508 10.41903 11.23149 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.043565 B = 0.002695 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.561532 B =10388.409190 C =10585.385576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.105 4.105 3 H 0.104 0.896 4 C 0.520 3.480 5 O -0.524 6.524 6 N -0.699 5.699 7 C 0.098 3.902 8 H 0.133 0.867 9 C -0.181 4.181 10 H 0.106 0.894 11 C 0.154 3.846 12 N -0.597 5.597 13 C -0.330 4.330 14 H 0.065 0.935 15 C -0.027 4.027 16 N -0.919 5.919 17 Si 1.075 2.925 18 H -0.292 1.292 19 H -0.290 1.290 20 H -0.293 1.293 21 C 0.166 3.834 22 C -0.173 4.173 23 H 0.103 0.897 24 C 0.096 3.904 25 H 0.076 0.924 26 C -0.151 4.151 27 C -0.156 4.156 28 C 0.042 3.958 29 O -0.356 6.356 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.397 0.603 34 H 0.027 0.973 35 H 0.054 0.946 36 H 0.270 0.730 37 H 0.068 0.932 38 H 0.028 0.972 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.336 9.546 23.718 25.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.122 0.878 4 C 0.305 3.695 5 O -0.398 6.398 6 N -0.348 5.348 7 C -0.008 4.008 8 H 0.151 0.849 9 C -0.203 4.203 10 H 0.124 0.876 11 C 0.028 3.972 12 N -0.321 5.321 13 C -0.457 4.457 14 H 0.083 0.917 15 C -0.229 4.229 16 N -0.559 5.559 17 Si 0.905 3.095 18 H -0.218 1.218 19 H -0.216 1.216 20 H -0.220 1.220 21 C 0.039 3.961 22 C -0.194 4.194 23 H 0.121 0.879 24 C 0.037 3.963 25 H 0.094 0.906 26 C -0.189 4.189 27 C -0.194 4.194 28 C -0.035 4.035 29 O -0.274 6.274 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.231 0.769 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.046 0.954 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.108 0.892 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.449 8.293 22.106 23.861 hybrid contribution 0.384 1.123 1.519 1.927 sum -3.065 9.416 23.625 25.616 Atomic orbital electron populations 1.21780 0.91889 1.03379 1.03156 1.21400 0.97501 1.01269 0.92507 0.87818 1.20392 0.80188 0.84782 0.84093 1.90732 1.36697 1.25983 1.86413 1.45361 1.53008 1.31494 1.04963 1.22482 1.01591 0.97302 0.79460 0.84907 1.25115 0.98723 0.97623 0.98818 0.87621 1.21195 0.91530 0.95665 0.88799 1.45287 1.16908 1.68462 1.01481 1.19791 1.31312 1.15204 0.79436 0.91673 1.25894 0.99491 0.92153 1.05321 1.70698 1.47706 1.19959 1.17572 0.83388 0.76571 0.74843 0.74731 1.21811 1.21640 1.22015 1.21118 0.93302 0.92329 0.89339 1.24394 0.95266 1.03635 0.96134 0.87923 1.22720 0.82037 0.98886 0.92634 0.90626 1.23037 0.98675 1.01916 0.95236 1.22954 0.95911 1.01637 0.98882 1.23391 0.98928 0.99275 0.81878 1.89258 1.20466 1.92446 1.25278 0.91065 0.91346 0.91575 0.76889 0.95548 0.92803 0.91937 0.91390 0.95423 0.90416 0.90310 0.90699 0.90601 0.89199 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 8.86 37.16 0.33 -0.68 16 2 C -0.11 -1.04 2.41 -91.77 -0.22 -1.26 16 3 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 4 C 0.52 7.44 7.05 -10.98 -0.08 7.37 16 5 O -0.52 -9.88 15.06 -8.27 -0.12 -10.01 16 6 N -0.70 -9.45 5.46 -51.64 -0.28 -9.73 16 7 C 0.10 1.68 6.19 -65.70 -0.41 1.27 16 8 H 0.13 2.61 7.40 -51.92 -0.38 2.22 16 9 C -0.18 -3.31 7.25 -86.76 -0.63 -3.94 16 10 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 11 C 0.15 3.40 7.08 -2.19 -0.02 3.38 16 12 N -0.60 -15.59 3.22 -168.61 -0.54 -16.13 16 13 C -0.33 -9.48 10.19 -15.06 -0.15 -9.64 16 14 H 0.07 1.86 7.94 -52.49 -0.42 1.45 16 15 C -0.03 -0.78 5.12 -17.43 -0.09 -0.87 16 16 N -0.92 -28.21 12.82 55.49 0.71 -27.49 16 17 Si 1.08 25.66 29.98 -169.99 -5.10 20.57 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 C 0.17 3.93 4.99 -2.41 -0.01 3.92 16 22 C -0.17 -3.22 6.91 -89.22 -0.62 -3.84 16 23 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 24 C 0.10 1.00 2.29 -25.96 -0.06 0.94 16 25 H 0.08 0.87 8.06 -51.93 -0.42 0.45 16 26 C -0.15 -1.04 5.54 -25.16 -0.14 -1.18 16 27 C -0.16 -1.04 7.09 -25.16 -0.18 -1.22 16 28 C 0.04 0.39 7.63 37.94 0.29 0.68 16 29 O -0.36 -4.68 10.60 -49.06 -0.52 -5.20 16 30 H 0.07 0.36 7.11 -51.93 -0.37 -0.01 16 31 H 0.07 0.42 7.56 -51.93 -0.39 0.03 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.40 4.13 8.24 -40.82 -0.34 3.79 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.27 8.33 6.42 -40.82 -0.26 8.07 16 37 H 0.07 1.76 7.47 -51.93 -0.39 1.37 16 38 H 0.03 0.69 7.66 -51.93 -0.40 0.29 16 39 H 0.08 0.46 7.65 -51.93 -0.40 0.07 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 352.15 15.07 5.31 5.31 Total: -1.00 -34.99 352.15 -9.74 -44.73 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.21 Total: 3.03 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -1.98 Total: -5.07 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.11 Total: -53.36 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.64 Total: -15.20 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.10 Total: 20.57 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.99 -9.74 -44.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026027300.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.359 kcal (2) G-P(sol) polarization free energy of solvation -34.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds