Wall clock time and date at job start Tue Mar 31 2020 07:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47469 * 2 1 4 4 C 1.50710 * 109.46779 * 240.00528 * 2 1 3 5 5 O 1.21281 * 119.99539 * 239.99559 * 4 2 1 6 6 N 1.34780 * 120.00034 * 59.99604 * 4 2 1 7 7 C 1.46494 * 120.00052 * 180.02562 * 6 4 2 8 8 H 1.09009 * 115.51478 * 9.58327 * 7 6 4 9 9 C 1.57119 * 116.92201 * 222.99259 * 7 6 4 10 10 H 1.08994 * 119.80352 * 3.77148 * 9 7 6 11 11 C 1.54795 * 118.01525 * 161.35047 * 9 7 6 12 12 N 1.48147 * 104.41932 * 86.47722 * 11 9 7 13 13 C 1.36935 * 127.83869 * 140.36541 * 12 11 9 14 14 H 1.07997 * 120.00036 * 338.36990 * 13 12 11 15 15 C 1.38808 * 119.99819 * 158.37094 * 13 12 11 16 16 N 1.31623 * 120.00165 * 335.54420 * 15 13 12 17 17 Si 1.86803 * 119.99860 * 155.54589 * 15 13 12 18 18 H 1.48497 * 109.47267 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47325 * 239.99907 * 17 15 13 20 20 H 1.48498 * 109.47089 * 120.00160 * 17 15 13 21 21 C 1.48149 * 104.32092 * 320.10003 * 12 11 9 22 22 C 1.52999 * 117.44550 * 154.99964 * 7 6 4 23 23 H 1.08996 * 119.53502 * 354.24492 * 22 7 6 24 24 C 1.52993 * 109.47619 * 120.00446 * 2 1 3 25 25 H 1.09000 * 110.33253 * 62.25017 * 24 2 1 26 26 C 1.54482 * 110.37334 * 299.99819 * 24 2 1 27 27 C 1.54511 * 104.06389 * 217.18965 * 26 24 2 28 28 C 1.54482 * 104.06074 * 359.97438 * 27 26 24 29 29 O 1.44424 * 104.80620 * 23.97919 * 28 27 26 30 30 H 1.09002 * 109.46235 * 299.99443 * 1 2 3 31 31 H 1.08997 * 109.47113 * 59.99188 * 1 2 3 32 32 H 1.08997 * 109.47073 * 180.02562 * 1 2 3 33 33 H 0.97002 * 119.99371 * 0.02562 * 6 4 2 34 34 H 1.08996 * 110.54526 * 327.72921 * 11 9 7 35 35 H 1.09007 * 110.45674 * 205.17250 * 11 9 7 36 36 H 0.96991 * 120.00119 * 354.38143 * 16 15 13 37 37 H 1.08999 * 110.40501 * 158.62855 * 21 12 11 38 38 H 1.09000 * 110.40823 * 280.95059 * 21 12 11 39 39 H 1.09002 * 110.50720 * 335.83409 * 26 24 2 40 40 H 1.08998 * 110.50793 * 98.54258 * 26 24 2 41 41 H 1.09000 * 110.51142 * 118.63891 * 27 26 24 42 42 H 1.08995 * 110.51119 * 241.35339 * 27 26 24 43 43 H 1.08997 * 110.37224 * 142.81283 * 28 27 26 44 44 H 1.08999 * 110.37217 * 265.14596 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.7296 -1.6964 -1.1194 6 7 1.7066 -0.2498 -2.4547 7 6 2.1943 -0.9406 -3.6509 8 1 2.6741 -1.9034 -3.4743 9 6 2.7285 -0.0416 -4.8235 10 1 2.7803 1.0397 -4.6968 11 6 3.6371 -0.7008 -5.8893 12 7 2.6926 -1.2660 -6.8808 13 6 2.8142 -1.2786 -8.2447 14 1 3.4609 -0.5665 -8.7357 15 6 2.1064 -2.2065 -8.9961 16 7 1.7189 -3.3389 -8.4484 17 14 1.7036 -1.8481 -10.7847 18 1 2.2466 -0.5171 -11.1572 19 1 0.2303 -1.8508 -10.9705 20 1 2.3133 -2.8913 -11.6479 21 6 1.5897 -1.8205 -6.0616 22 6 1.3805 -0.7837 -4.9370 23 1 0.4286 -0.2535 -4.9091 24 6 2.0401 -0.7213 1.2491 25 1 1.7177 -1.7625 1.2434 26 6 1.5368 -0.0095 2.5244 27 6 2.7233 -0.1182 3.5082 28 6 3.8028 -0.8834 2.7110 29 8 3.4799 -0.6399 1.3246 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.1492 0.5391 -2.5435 34 1 4.2383 -1.4927 -5.4425 35 1 4.2783 0.0459 -6.3579 36 1 1.9970 -3.5614 -7.5463 37 1 0.6843 -1.9195 -6.6604 38 1 1.8752 -2.7855 -5.6430 39 1 1.3096 1.0357 2.3140 40 1 0.6604 -0.5186 2.9253 41 1 3.0827 0.8732 3.7840 42 1 2.4334 -0.6810 4.3954 43 1 4.7939 -0.4939 2.9438 44 1 3.7522 -1.9498 2.9308 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026027300.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:44 Heat of formation + Delta-G solvation = -54.019790 kcal Electronic energy + Delta-G solvation = -23751.780155 eV Core-core repulsion = 20283.544331 eV Total energy + Delta-G solvation = -3468.235824 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.44316 -40.44340 -39.50846 -36.26860 -35.23511 -34.21257 -32.79912 -31.87414 -29.15928 -28.84924 -27.44785 -25.80068 -24.01061 -23.04031 -22.04919 -21.86760 -21.00054 -20.83835 -19.54047 -18.42128 -17.86844 -17.02918 -16.78243 -16.62420 -16.07260 -15.81701 -15.67099 -15.38006 -15.13641 -14.93031 -14.55258 -14.13304 -13.90182 -13.60284 -13.37205 -13.29882 -12.94854 -12.65718 -12.60487 -12.56167 -12.49957 -12.32221 -12.04809 -12.00647 -11.88065 -11.82255 -11.67439 -11.44170 -11.00111 -10.76577 -10.70412 -10.63666 -9.72010 -9.13369 -8.41116 -5.44259 1.52379 1.57052 1.65826 1.82447 1.90130 2.60230 2.68226 2.92136 3.14900 3.40537 3.56692 3.57651 3.68628 3.75208 3.86083 3.98233 3.98947 4.11864 4.15495 4.23731 4.27058 4.35907 4.45188 4.54592 4.66697 4.72772 4.79799 4.82791 4.84402 4.86505 4.95624 4.96353 5.00746 5.13377 5.14641 5.20309 5.21931 5.27027 5.45091 5.59919 5.96701 6.22170 6.50232 6.76377 7.22669 7.60426 8.27592 8.94353 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.043565 B = 0.002695 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.561532 B =10388.409190 C =10585.385576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.095 4.095 3 H 0.125 0.875 4 C 0.514 3.486 5 O -0.577 6.577 6 N -0.683 5.683 7 C 0.116 3.884 8 H 0.102 0.898 9 C -0.167 4.167 10 H 0.140 0.860 11 C 0.146 3.854 12 N -0.621 5.621 13 C -0.340 4.340 14 H 0.064 0.936 15 C -0.081 4.081 16 N -0.948 5.948 17 Si 1.129 2.871 18 H -0.269 1.269 19 H -0.284 1.284 20 H -0.290 1.290 21 C 0.168 3.832 22 C -0.164 4.164 23 H 0.134 0.866 24 C 0.086 3.914 25 H 0.052 0.948 26 C -0.142 4.142 27 C -0.150 4.150 28 C 0.031 3.969 29 O -0.396 6.396 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.418 0.582 34 H 0.013 0.987 35 H 0.060 0.940 36 H 0.252 0.748 37 H 0.040 0.960 38 H 0.003 0.997 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.796 12.699 25.247 28.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.143 0.857 4 C 0.302 3.698 5 O -0.455 6.455 6 N -0.333 5.333 7 C 0.008 3.992 8 H 0.120 0.880 9 C -0.188 4.188 10 H 0.158 0.842 11 C 0.021 3.979 12 N -0.346 5.346 13 C -0.468 4.468 14 H 0.082 0.918 15 C -0.277 4.277 16 N -0.590 5.590 17 Si 0.952 3.048 18 H -0.194 1.194 19 H -0.211 1.211 20 H -0.217 1.217 21 C 0.042 3.958 22 C -0.185 4.185 23 H 0.151 0.849 24 C 0.028 3.972 25 H 0.070 0.930 26 C -0.179 4.179 27 C -0.187 4.187 28 C -0.046 4.046 29 O -0.316 6.316 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.256 0.744 34 H 0.030 0.970 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.021 0.979 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.920 11.500 23.681 26.781 hybrid contribution 0.957 0.066 1.114 1.470 sum -3.963 11.566 24.794 27.645 Atomic orbital electron populations 1.21832 0.89264 1.03366 1.05336 1.21480 0.99405 1.01264 0.89456 0.85708 1.21366 0.79026 0.84151 0.85250 1.90719 1.39103 1.28526 1.87146 1.45180 1.52888 1.31743 1.03523 1.21993 1.00327 0.96412 0.80422 0.87976 1.25005 0.96754 0.99034 0.98040 0.84196 1.21315 0.91845 0.95500 0.89255 1.45584 1.18730 1.68734 1.01581 1.20101 1.30954 1.14685 0.81043 0.91810 1.27445 0.99429 0.91520 1.09266 1.70834 1.49590 1.21544 1.17009 0.82691 0.76597 0.75710 0.69789 1.19399 1.21074 1.21686 1.20943 0.91492 0.92947 0.90405 1.24142 0.96935 1.02115 0.95346 0.84867 1.22871 0.81212 0.98397 0.94752 0.92956 1.23034 0.99127 1.02651 0.93128 1.22950 0.94809 1.02027 0.98928 1.23594 1.00421 0.99590 0.80964 1.89214 1.22202 1.92601 1.27549 0.88127 0.89963 0.92711 0.74397 0.96957 0.92106 0.93761 0.94140 0.97915 0.88580 0.88547 0.89561 0.88986 0.88593 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.86 71.98 0.64 -0.83 16 2 C -0.09 -1.65 2.41 -11.54 -0.03 -1.67 16 3 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 4 C 0.51 14.24 7.05 87.66 0.62 14.86 16 5 O -0.58 -22.41 15.06 10.19 0.15 -22.25 16 6 N -0.68 -17.04 5.46 -435.69 -2.38 -19.42 16 7 C 0.12 3.91 6.19 46.44 0.29 4.20 16 8 H 0.10 4.18 7.40 -2.38 -0.02 4.17 16 9 C -0.17 -5.83 7.25 -8.29 -0.06 -5.89 16 10 H 0.14 4.01 8.14 -2.39 -0.02 3.99 16 11 C 0.15 6.50 7.08 86.68 0.61 7.11 16 12 N -0.62 -33.23 3.22 -687.35 -2.21 -35.44 16 13 C -0.34 -19.86 10.19 84.03 0.86 -19.01 16 14 H 0.06 3.67 7.94 -2.91 -0.02 3.64 16 15 C -0.08 -4.79 5.12 84.86 0.43 -4.36 16 16 N -0.95 -60.20 12.82 21.65 0.28 -59.92 16 17 Si 1.13 51.95 29.98 68.60 2.06 54.01 16 18 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 21 C 0.17 8.29 4.99 86.53 0.43 8.72 16 22 C -0.16 -5.97 6.91 -9.88 -0.07 -6.04 16 23 H 0.13 4.07 8.14 -2.39 -0.02 4.06 16 24 C 0.09 1.69 2.29 31.10 0.07 1.76 16 25 H 0.05 1.23 8.06 -2.39 -0.02 1.21 16 26 C -0.14 -1.51 5.54 31.61 0.18 -1.33 16 27 C -0.15 -1.61 7.09 31.61 0.22 -1.38 16 28 C 0.03 0.55 7.63 72.49 0.55 1.10 16 29 O -0.40 -10.35 10.60 -135.76 -1.44 -11.79 16 30 H 0.10 0.51 7.11 -2.39 -0.02 0.50 16 31 H 0.08 0.66 7.56 -2.39 -0.02 0.64 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.42 7.07 8.24 -92.71 -0.76 6.31 16 34 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.06 2.58 8.14 -2.38 -0.02 2.56 16 36 H 0.25 16.48 6.42 -92.71 -0.59 15.88 16 37 H 0.04 2.18 7.47 -2.39 -0.02 2.16 16 38 H 0.00 0.16 7.66 -2.39 -0.02 0.14 16 39 H 0.10 0.70 7.65 -2.39 -0.02 0.68 16 40 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.09 0.69 8.14 -2.39 -0.02 0.68 16 43 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -80.88 352.15 1.60 -79.28 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.40 Total: 18.30 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 4.75 Total: -2.77 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -4.31 Total: -114.78 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -1.29 Total: -34.04 kcal Atomic # 14 Polarization: 51.95 SS G_CDS: 2.06 Total: 54.01 kcal Total: -80.88 1.60 -79.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026027300.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.260 kcal (2) G-P(sol) polarization free energy of solvation -80.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds