Wall clock time and date at job start Tue Mar 31 2020 07:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47417 * 2 1 4 4 C 1.50701 * 109.47230 * 240.00351 * 2 1 3 5 5 O 1.21281 * 119.99475 * 240.00112 * 4 2 1 6 6 N 1.34771 * 119.99960 * 59.99774 * 4 2 1 7 7 C 1.46507 * 119.99946 * 180.02562 * 6 4 2 8 8 H 1.09005 * 115.49153 * 9.61657 * 7 6 4 9 9 C 1.57116 * 118.27367 * 223.46583 * 7 6 4 10 10 H 1.09000 * 121.24402 * 3.76883 * 9 7 6 11 11 C 1.54384 * 118.20333 * 162.01462 * 9 7 6 12 12 N 1.48152 * 104.62094 * 86.19484 * 11 9 7 13 13 C 1.36932 * 127.83984 * 140.41307 * 12 11 9 14 14 H 1.07997 * 120.00056 * 195.62204 * 13 12 11 15 15 C 1.38817 * 119.99827 * 15.62261 * 13 12 11 16 16 N 1.31614 * 120.00197 * 9.10103 * 15 13 12 17 17 Si 1.86804 * 119.99863 * 189.11079 * 15 13 12 18 18 H 1.48491 * 109.47430 * 59.99369 * 17 15 13 19 19 H 1.48498 * 109.47092 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46745 * 299.99440 * 17 15 13 21 21 C 1.48150 * 104.32237 * 320.41592 * 12 11 9 22 22 C 1.52991 * 117.44545 * 154.99986 * 7 6 4 23 23 H 1.09006 * 119.53720 * 355.87965 * 22 7 6 24 24 C 1.52997 * 109.47175 * 119.99705 * 2 1 3 25 25 H 1.09005 * 109.86972 * 178.98752 * 24 2 1 26 26 C 1.54096 * 109.88107 * 300.00180 * 24 2 1 27 27 C 1.54818 * 104.18734 * 121.45208 * 26 24 2 28 28 C 1.54998 * 102.08939 * 20.87989 * 27 26 24 29 29 O 1.43745 * 109.87444 * 57.83490 * 24 2 1 30 30 H 1.09003 * 109.47234 * 300.00336 * 1 2 3 31 31 H 1.09001 * 109.47210 * 59.99507 * 1 2 3 32 32 H 1.08994 * 109.47363 * 180.02562 * 1 2 3 33 33 H 0.96998 * 120.00451 * 0.02562 * 6 4 2 34 34 H 1.09002 * 110.40883 * 327.41470 * 11 9 7 35 35 H 1.08992 * 110.50938 * 205.03157 * 11 9 7 36 36 H 0.96999 * 120.00326 * 179.97438 * 16 15 13 37 37 H 1.08997 * 110.40934 * 280.80147 * 21 12 11 38 38 H 1.08999 * 110.40302 * 158.36621 * 21 12 11 39 39 H 1.09000 * 110.48885 * 240.12302 * 26 24 2 40 40 H 1.08996 * 110.49264 * 2.77734 * 26 24 2 41 41 H 1.09005 * 110.90572 * 139.07559 * 27 26 24 42 42 H 1.09001 * 110.90689 * 262.64581 * 27 26 24 43 43 H 1.09000 * 110.61497 * 81.48040 * 28 27 26 44 44 H 1.09004 * 110.61226 * 204.47375 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1192 6 7 1.7067 -0.2498 -2.4545 7 6 2.1946 -0.9407 -3.6508 8 1 2.6738 -1.9037 -3.4738 9 6 2.7466 -0.0728 -4.8384 10 1 2.8255 1.0114 -4.7574 11 6 3.6330 -0.7639 -5.8968 12 7 2.6751 -1.3272 -6.8766 13 6 2.7923 -1.3634 -8.2404 14 1 1.9260 -1.5695 -8.8515 15 6 4.0246 -1.1353 -8.8375 16 7 5.1108 -1.0624 -8.0979 17 14 4.1411 -0.9315 -10.6907 18 1 3.3170 0.2290 -11.1139 19 1 5.5567 -0.7006 -11.0753 20 1 3.6422 -2.1618 -11.3562 21 6 1.5617 -1.8424 -6.0461 22 6 1.3810 -0.7839 -4.9369 23 1 0.4420 -0.2306 -4.9146 24 6 2.0400 -0.7212 1.2492 25 1 3.1298 -0.7407 1.2468 26 6 1.5315 -0.0021 2.5137 27 6 0.7319 -1.0890 3.2727 28 6 1.3098 -2.3959 2.6722 29 8 1.5244 -2.0625 1.2839 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.1493 0.5390 -2.5436 34 1 4.2208 -1.5597 -5.4393 35 1 4.2877 -0.0383 -6.3793 36 1 5.9719 -0.9033 -8.5151 37 1 1.8260 -2.8066 -5.6119 38 1 0.6524 -1.9288 -6.6409 39 1 2.3694 0.3464 3.1175 40 1 0.8820 0.8307 2.2440 41 1 0.9234 -1.0355 4.3445 42 1 -0.3347 -1.0033 3.0652 43 1 2.2519 -2.6561 3.1546 44 1 0.5920 -3.2110 2.7647 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026027302.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:46 Heat of formation + Delta-G solvation = -46.522095 kcal Electronic energy + Delta-G solvation = -23819.449104 eV Core-core repulsion = 20351.538405 eV Total energy + Delta-G solvation = -3467.910700 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.41529 -40.35775 -39.38553 -36.01664 -34.98695 -34.05024 -32.76397 -31.92332 -28.98217 -28.90455 -27.61615 -25.89723 -23.93654 -22.91501 -22.02816 -21.87764 -20.85906 -20.63072 -18.87996 -18.23342 -17.67857 -17.14051 -16.81084 -16.53480 -16.49688 -15.69081 -15.55534 -15.15767 -14.85860 -14.65069 -14.53166 -14.21899 -13.74923 -13.37424 -13.28799 -13.10021 -12.91647 -12.83069 -12.67802 -12.50294 -12.39903 -12.15836 -12.07736 -12.05054 -11.89687 -11.86806 -11.64850 -11.43195 -10.89824 -10.78397 -10.65201 -10.54420 -9.61219 -8.94524 -7.92623 -5.30415 1.45970 1.49761 1.56622 1.60837 1.98342 2.48080 2.80405 3.00554 3.27497 3.52169 3.59835 3.70871 3.81480 3.87464 3.93943 4.03657 4.11145 4.12744 4.14788 4.36952 4.42595 4.45955 4.53054 4.68174 4.80441 4.84629 4.87254 4.89724 4.96863 4.97828 4.99726 5.00883 5.18623 5.26749 5.27701 5.39392 5.41551 5.44690 5.56534 5.62711 6.10487 6.14712 6.58594 6.98099 7.31188 7.65510 8.44439 9.21231 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.047364 B = 0.002674 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.024985 B =10467.820246 C =10563.736986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.102 4.102 3 H 0.140 0.860 4 C 0.513 3.487 5 O -0.577 6.577 6 N -0.683 5.683 7 C 0.116 3.884 8 H 0.098 0.902 9 C -0.186 4.186 10 H 0.125 0.875 11 C 0.188 3.812 12 N -0.617 5.617 13 C -0.243 4.243 14 H 0.085 0.915 15 C -0.065 4.065 16 N -0.950 5.950 17 Si 0.985 3.015 18 H -0.273 1.273 19 H -0.294 1.294 20 H -0.275 1.275 21 C 0.146 3.854 22 C -0.155 4.155 23 H 0.140 0.860 24 C 0.087 3.913 25 H 0.048 0.952 26 C -0.146 4.146 27 C -0.145 4.145 28 C 0.030 3.970 29 O -0.390 6.390 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.417 0.583 34 H -0.011 1.011 35 H 0.059 0.941 36 H 0.250 0.750 37 H 0.015 0.985 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.056 0.944 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.921 7.497 24.066 28.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.123 4.123 3 H 0.157 0.843 4 C 0.301 3.699 5 O -0.455 6.455 6 N -0.333 5.333 7 C 0.008 3.992 8 H 0.116 0.884 9 C -0.208 4.208 10 H 0.143 0.857 11 C 0.062 3.938 12 N -0.341 5.341 13 C -0.372 4.372 14 H 0.102 0.898 15 C -0.258 4.258 16 N -0.598 5.598 17 Si 0.812 3.188 18 H -0.199 1.199 19 H -0.221 1.221 20 H -0.201 1.201 21 C 0.020 3.980 22 C -0.176 4.176 23 H 0.158 0.842 24 C 0.029 3.971 25 H 0.066 0.934 26 C -0.183 4.183 27 C -0.183 4.183 28 C -0.046 4.046 29 O -0.310 6.310 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.255 0.745 34 H 0.007 0.993 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.033 0.967 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.320 6.667 23.762 27.584 hybrid contribution 0.685 -0.006 -1.144 1.333 sum -11.635 6.662 22.618 26.293 Atomic orbital electron populations 1.21759 0.90481 1.02735 1.04433 1.21663 0.99782 1.00979 0.89851 0.84255 1.21371 0.79085 0.84165 0.85243 1.90723 1.39482 1.28156 1.87140 1.45167 1.52799 1.31781 1.03573 1.21940 1.00481 0.96259 0.80538 0.88362 1.25058 0.98018 0.98969 0.98715 0.85694 1.20779 0.90968 0.94617 0.87411 1.45490 1.19988 1.66881 1.01716 1.19392 0.94262 1.42561 0.80979 0.89756 1.25831 0.94703 1.02381 1.02929 1.70110 0.98009 1.55857 1.35789 0.85065 0.76309 0.78449 0.78955 1.19881 1.22052 1.20056 1.21296 0.91920 0.93604 0.91174 1.24200 0.96413 1.01784 0.95188 0.84231 1.22581 0.97013 0.82774 0.94767 0.93355 1.23069 1.01364 0.99394 0.94473 1.23116 1.00861 0.93153 1.01164 1.23758 1.00167 0.98974 0.81696 1.89024 1.85267 1.30720 1.25951 0.88718 0.90500 0.93495 0.74491 0.99297 0.92291 0.94076 0.96719 0.91482 0.89432 0.87734 0.88475 0.89698 0.92587 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.67 71.98 0.62 -1.13 16 2 C -0.10 -1.79 2.51 -11.54 -0.03 -1.82 16 3 H 0.14 1.52 8.14 -2.38 -0.02 1.50 16 4 C 0.51 14.62 7.02 87.66 0.62 15.23 16 5 O -0.58 -23.06 14.95 12.75 0.19 -22.87 16 6 N -0.68 -17.63 5.50 -435.70 -2.39 -20.02 16 7 C 0.12 4.02 6.16 46.43 0.29 4.30 16 8 H 0.10 4.17 7.40 -2.38 -0.02 4.16 16 9 C -0.19 -7.21 7.27 -8.44 -0.06 -7.27 16 10 H 0.13 4.29 8.14 -2.39 -0.02 4.27 16 11 C 0.19 9.77 5.73 86.53 0.50 10.27 16 12 N -0.62 -33.04 3.38 -688.14 -2.33 -35.36 16 13 C -0.24 -13.94 10.35 84.04 0.87 -13.07 16 14 H 0.08 4.55 7.84 -2.91 -0.02 4.53 16 15 C -0.06 -3.76 5.40 84.86 0.46 -3.31 16 16 N -0.95 -58.80 10.86 21.65 0.24 -58.57 16 17 Si 0.99 46.07 29.56 68.60 2.03 48.10 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 C 0.15 6.30 7.03 86.53 0.61 6.90 16 22 C -0.16 -5.36 6.91 -9.89 -0.07 -5.43 16 23 H 0.14 3.81 8.14 -2.38 -0.02 3.79 16 24 C 0.09 1.73 2.66 30.96 0.08 1.81 16 25 H 0.05 1.16 8.08 -2.38 -0.02 1.15 16 26 C -0.15 -1.53 6.15 31.59 0.19 -1.34 16 27 C -0.15 -1.47 7.15 31.90 0.23 -1.24 16 28 C 0.03 0.52 7.72 72.67 0.56 1.08 16 29 O -0.39 -10.09 9.52 -133.20 -1.27 -11.36 16 30 H 0.09 0.70 6.41 -2.39 -0.02 0.69 16 31 H 0.08 0.74 7.57 -2.39 -0.02 0.73 16 32 H 0.05 0.85 7.64 -2.39 -0.02 0.84 16 33 H 0.42 7.34 8.24 -92.71 -0.76 6.58 16 34 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 35 H 0.06 3.40 6.51 -2.39 -0.02 3.39 16 36 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 37 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.10 0.64 6.24 -2.39 -0.01 0.63 16 41 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 42 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -79.43 349.65 1.56 -77.87 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.23 Total: 17.22 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 4.87 Total: 5.00 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -4.48 Total: -113.95 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -1.08 Total: -34.23 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -79.43 1.56 -77.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026027302.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.351 kcal (2) G-P(sol) polarization free energy of solvation -79.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds