Wall clock time and date at job start Tue Mar 31 2020 06:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.86905 * 2 1 4 4 C 1.54106 * 110.00396 * 121.08462 * 2 1 3 5 5 C 1.54804 * 104.18571 * 121.52584 * 4 2 1 6 6 H 1.08992 * 110.94117 * 262.66706 * 5 4 2 7 7 C 1.50704 * 110.90585 * 139.07849 * 5 4 2 8 8 O 1.21291 * 119.99962 * 340.06730 * 7 5 4 9 9 N 1.34778 * 120.00366 * 160.06949 * 7 5 4 10 10 C 1.47160 * 120.70475 * 355.11404 * 9 7 5 11 11 C 1.53894 * 108.03193 * 132.73629 * 10 9 7 12 12 H 1.08999 * 112.57762 * 182.22096 * 11 10 9 13 13 C 1.54547 * 107.82592 * 306.50199 * 11 10 9 14 14 C 1.54274 * 104.84858 * 89.06635 * 13 11 10 15 15 C 1.54543 * 104.85326 * 0.02562 * 14 13 11 16 16 H 1.09006 * 112.68568 * 146.68263 * 15 14 13 17 17 C 1.47165 * 120.71275 * 175.09603 * 9 7 5 18 18 N 1.48306 * 107.20598 * 58.35371 * 11 10 9 19 19 C 1.36941 * 128.07603 * 106.71022 * 18 11 10 20 20 H 1.07999 * 119.99631 * 15.76596 * 19 18 11 21 21 C 1.38812 * 120.00274 * 195.77319 * 19 18 11 22 22 N 1.31617 * 119.99567 * 8.97363 * 21 19 18 23 23 Si 1.86794 * 119.99993 * 188.97350 * 21 19 18 24 24 H 1.48499 * 109.47278 * 94.78928 * 23 21 19 25 25 H 1.48502 * 109.47198 * 214.78763 * 23 21 19 26 26 H 1.48497 * 109.47473 * 334.78816 * 23 21 19 27 27 C 1.55000 * 102.09567 * 20.88287 * 5 4 2 28 28 O 1.43737 * 109.88162 * 238.99119 * 2 1 3 29 29 H 1.09007 * 109.46684 * 179.55256 * 1 2 3 30 30 H 1.08996 * 109.47257 * 299.55392 * 1 2 3 31 31 H 1.08996 * 109.47267 * 59.56072 * 1 2 3 32 32 H 1.08997 * 110.48684 * 2.85103 * 4 2 1 33 33 H 1.08997 * 110.48450 * 240.20206 * 4 2 1 34 34 H 1.09003 * 109.75432 * 13.10487 * 10 9 7 35 35 H 1.08999 * 109.75235 * 252.36682 * 10 9 7 36 36 H 1.09006 * 110.36237 * 207.90697 * 13 11 10 37 37 H 1.08996 * 110.36886 * 330.22213 * 13 11 10 38 38 H 1.09002 * 110.36607 * 118.84520 * 14 13 11 39 39 H 1.08998 * 110.36660 * 241.15664 * 14 13 11 40 40 H 1.08994 * 109.75059 * 107.63224 * 17 9 7 41 41 H 1.09007 * 109.78644 * 346.91812 * 17 9 7 42 42 H 0.97000 * 119.99612 * 180.02562 * 22 21 19 43 43 H 1.08996 * 110.61792 * 81.47200 * 27 5 4 44 44 H 1.09004 * 110.61525 * 204.31600 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0252 0.0000 4 6 2.0571 -0.7477 1.2402 5 6 2.9243 -1.8887 0.6550 6 1 2.3613 -2.8208 0.6076 7 6 4.1889 -2.0675 1.4550 8 8 4.5894 -1.1694 2.1651 9 7 4.8750 -3.2252 1.3815 10 6 4.3490 -4.3627 0.6101 11 6 5.4875 -4.9093 -0.2692 12 1 5.1664 -5.7349 -0.9043 13 6 6.0596 -3.7307 -1.0891 14 6 7.1675 -3.1307 -0.1988 15 6 7.1648 -4.0016 1.0779 16 1 8.1584 -4.1144 1.5120 17 6 6.1663 -3.3787 2.0704 18 7 6.5946 -5.2977 0.6379 19 6 6.9969 -6.5592 0.9875 20 1 6.6694 -7.4101 0.4088 21 6 7.8254 -6.7441 2.0858 22 7 8.0817 -5.7372 2.8937 23 14 8.5767 -8.4220 2.4170 24 1 9.9360 -8.4819 1.8221 25 1 8.6675 -8.6431 3.8826 26 1 7.7237 -9.4749 1.8095 27 6 3.2399 -1.3601 -0.7675 28 8 2.0188 -0.6964 -1.1585 29 1 -0.3633 -1.0277 -0.0080 30 1 -0.3633 0.5069 0.8939 31 1 -0.3633 0.5206 -0.8860 32 1 1.2294 -1.1563 1.8197 33 1 2.6644 -0.0843 1.8559 34 1 3.5240 -4.0304 -0.0201 35 1 4.0032 -5.1408 1.2906 36 1 6.4808 -4.0908 -2.0278 37 1 5.2836 -2.9895 -1.2801 38 1 8.1334 -3.1956 -0.6997 39 1 6.9363 -2.0945 0.0480 40 1 6.0478 -4.0338 2.9335 41 1 6.5295 -2.4036 2.3953 42 1 8.6609 -5.8664 3.6610 43 1 4.0689 -0.6531 -0.7390 44 1 3.4641 -2.1859 -1.4428 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029367157.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:15 Heat of formation + Delta-G solvation = -45.440864 kcal Electronic energy + Delta-G solvation = -25635.980173 eV Core-core repulsion = 22168.116359 eV Total energy + Delta-G solvation = -3467.863814 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.56169 -39.17372 -37.59223 -33.84784 -32.46605 -32.38227 -31.82515 -30.44600 -29.30188 -26.53630 -25.83315 -24.27290 -23.85714 -22.51180 -21.20784 -19.80159 -19.53040 -18.53109 -17.60738 -16.39795 -16.11400 -15.72111 -15.29813 -15.06245 -14.73653 -14.53512 -13.99154 -13.70981 -13.42025 -13.10266 -12.96454 -12.81335 -12.55488 -12.45492 -12.09011 -11.84744 -11.75079 -11.60908 -11.28709 -11.07994 -10.94020 -10.89642 -10.87070 -10.66469 -10.37199 -10.06816 -9.91268 -9.79205 -9.72723 -9.59501 -9.29495 -8.81253 -8.10593 -6.88675 -5.88703 -3.24957 2.95091 3.32822 3.38638 3.40731 3.44566 3.83731 4.37445 4.45122 4.68664 4.79136 4.94996 5.04355 5.12326 5.15296 5.27719 5.28767 5.49762 5.54922 5.57066 5.62469 5.64636 5.70333 5.77792 5.84015 5.87614 5.91048 5.99576 6.07274 6.18413 6.27771 6.35162 6.48052 6.59305 6.64384 6.74913 6.79415 6.83685 6.94087 7.25405 7.45991 7.65471 8.02605 8.09604 8.62278 9.00875 9.63075 10.39275 11.24197 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031716 B = 0.004273 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.622658 B = 6551.451426 C = 6709.259106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.072 3.928 3 H 0.069 0.931 4 C -0.139 4.139 5 C -0.146 4.146 6 H 0.104 0.896 7 C 0.515 3.485 8 O -0.556 6.556 9 N -0.587 5.587 10 C 0.091 3.909 11 C 0.133 3.867 12 H 0.079 0.921 13 C -0.125 4.125 14 C -0.136 4.136 15 C 0.167 3.833 16 H 0.119 0.881 17 C 0.111 3.889 18 N -0.584 5.584 19 C -0.229 4.229 20 H 0.077 0.923 21 C -0.002 4.002 22 N -0.912 5.912 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.066 3.934 28 O -0.373 6.373 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.255 0.745 43 H 0.066 0.934 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.947 7.785 -6.354 14.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.014 3.986 3 H 0.086 0.914 4 C -0.177 4.177 5 C -0.167 4.167 6 H 0.122 0.878 7 C 0.302 3.698 8 O -0.436 6.436 9 N -0.318 5.318 10 C -0.034 4.034 11 C 0.025 3.975 12 H 0.098 0.902 13 C -0.164 4.164 14 C -0.175 4.175 15 C 0.060 3.940 16 H 0.137 0.863 17 C -0.012 4.012 18 N -0.304 5.304 19 C -0.357 4.357 20 H 0.095 0.905 21 C -0.199 4.199 22 N -0.558 5.558 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.011 4.011 28 O -0.292 6.292 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.666 8.052 -5.987 14.644 hybrid contribution 0.423 -0.980 0.515 1.185 sum -10.243 7.072 -5.472 13.597 Atomic orbital electron populations 1.21929 0.93768 1.02786 1.02221 1.22756 0.94985 0.95954 0.84860 0.91352 1.22991 0.99524 0.97045 0.98159 1.22864 0.96064 1.01107 0.96706 0.87811 1.20057 0.84955 0.82438 0.82374 1.90631 1.69790 1.41661 1.41473 1.48222 1.22037 1.11983 1.49572 1.22605 0.97052 0.88524 0.95212 1.21959 0.89096 0.94758 0.91736 0.90250 1.22539 0.98004 0.97597 0.98299 1.22626 0.97783 0.98565 0.98568 1.21912 0.98063 0.83585 0.90444 0.86343 1.22487 0.81665 1.00376 0.96639 1.45167 1.31554 1.01688 1.52040 1.19011 1.26032 0.82756 1.07897 0.90533 1.24856 1.01458 0.97689 0.95898 1.69837 1.40224 1.29995 1.15740 0.86100 0.79260 0.83141 0.77196 1.21579 1.21734 1.20591 1.23450 0.87868 0.96693 0.93081 1.88865 1.39404 1.67698 1.33224 0.91869 0.91300 0.92024 0.90246 0.88579 0.91515 0.91497 0.92507 0.92960 0.92746 0.92971 0.90196 0.91403 0.93441 0.91591 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.37 37.16 0.35 -1.00 16 2 C 0.07 0.81 4.05 -26.15 -0.11 0.71 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.14 -1.72 6.17 -25.20 -0.16 -1.88 16 5 C -0.15 -1.98 2.52 -89.76 -0.23 -2.21 16 6 H 0.10 1.29 6.57 -51.93 -0.34 0.95 16 7 C 0.52 9.06 6.92 -10.98 -0.08 8.98 16 8 O -0.56 -11.50 15.06 5.55 0.08 -11.41 16 9 N -0.59 -10.85 2.25 -171.48 -0.39 -11.23 16 10 C 0.09 1.53 5.69 -3.22 -0.02 1.51 16 11 C 0.13 2.44 4.32 -65.66 -0.28 2.16 16 12 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 13 C -0.13 -2.08 6.18 -25.25 -0.16 -2.23 16 14 C -0.14 -2.55 6.18 -25.25 -0.16 -2.71 16 15 C 0.17 3.71 3.14 -65.64 -0.21 3.50 16 16 H 0.12 3.00 6.37 -51.93 -0.33 2.67 16 17 C 0.11 2.40 5.78 -3.18 -0.02 2.39 16 18 N -0.58 -13.41 2.81 -152.58 -0.43 -13.84 16 19 C -0.23 -5.85 10.37 -15.06 -0.16 -6.00 16 20 H 0.08 1.91 7.84 -52.49 -0.41 1.49 16 21 C 0.00 -0.04 5.42 -17.43 -0.09 -0.14 16 22 N -0.91 -24.73 10.38 55.49 0.58 -24.15 16 23 Si 0.91 20.93 29.56 -169.99 -5.03 15.90 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 C 0.07 0.85 6.62 38.21 0.25 1.10 16 28 O -0.37 -4.89 11.19 -35.23 -0.39 -5.28 16 29 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.86 7.70 -51.93 -0.40 0.46 16 33 H 0.10 1.35 6.80 -51.93 -0.35 0.99 16 34 H 0.07 0.89 5.48 -51.93 -0.28 0.61 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.76 5.98 -51.93 -0.31 0.45 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.96 7.84 -51.93 -0.41 0.55 16 40 H 0.08 1.98 7.78 -51.93 -0.40 1.58 16 41 H 0.07 1.49 7.16 -51.93 -0.37 1.12 16 42 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 43 H 0.07 0.90 8.04 -51.93 -0.42 0.48 16 44 H 0.10 1.17 6.63 -51.93 -0.34 0.82 16 LS Contribution 332.94 15.07 5.02 5.02 Total: -1.00 -28.78 332.94 -8.50 -37.28 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.89 Total: 3.53 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -1.05 Total: 4.19 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -0.24 Total: -49.22 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.31 Total: -16.69 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.78 -8.50 -37.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029367157.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.158 kcal (2) G-P(sol) polarization free energy of solvation -28.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds