Wall clock time and date at job start Tue Mar 31 2020 06:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.86905 * 2 1 4 4 C 1.54106 * 110.00396 * 121.08462 * 2 1 3 5 5 C 1.54804 * 104.18571 * 121.52584 * 4 2 1 6 6 H 1.08992 * 110.94117 * 262.66706 * 5 4 2 7 7 C 1.50704 * 110.90585 * 139.07849 * 5 4 2 8 8 O 1.21291 * 119.99962 * 340.06730 * 7 5 4 9 9 N 1.34778 * 120.00366 * 160.06949 * 7 5 4 10 10 C 1.47160 * 120.70475 * 355.11404 * 9 7 5 11 11 C 1.53894 * 108.03193 * 132.73629 * 10 9 7 12 12 H 1.08999 * 112.57762 * 182.22096 * 11 10 9 13 13 C 1.54547 * 107.82592 * 306.50199 * 11 10 9 14 14 C 1.54274 * 104.84858 * 89.06635 * 13 11 10 15 15 C 1.54543 * 104.85326 * 0.02562 * 14 13 11 16 16 H 1.09006 * 112.68568 * 146.68263 * 15 14 13 17 17 C 1.47165 * 120.71275 * 175.09603 * 9 7 5 18 18 N 1.48306 * 107.20598 * 58.35371 * 11 10 9 19 19 C 1.36941 * 128.07603 * 106.71022 * 18 11 10 20 20 H 1.07999 * 119.99631 * 15.76596 * 19 18 11 21 21 C 1.38812 * 120.00274 * 195.77319 * 19 18 11 22 22 N 1.31617 * 119.99567 * 8.97363 * 21 19 18 23 23 Si 1.86794 * 119.99993 * 188.97350 * 21 19 18 24 24 H 1.48499 * 109.47278 * 94.78928 * 23 21 19 25 25 H 1.48502 * 109.47198 * 214.78763 * 23 21 19 26 26 H 1.48497 * 109.47473 * 334.78816 * 23 21 19 27 27 C 1.55000 * 102.09567 * 20.88287 * 5 4 2 28 28 O 1.43737 * 109.88162 * 238.99119 * 2 1 3 29 29 H 1.09007 * 109.46684 * 179.55256 * 1 2 3 30 30 H 1.08996 * 109.47257 * 299.55392 * 1 2 3 31 31 H 1.08996 * 109.47267 * 59.56072 * 1 2 3 32 32 H 1.08997 * 110.48684 * 2.85103 * 4 2 1 33 33 H 1.08997 * 110.48450 * 240.20206 * 4 2 1 34 34 H 1.09003 * 109.75432 * 13.10487 * 10 9 7 35 35 H 1.08999 * 109.75235 * 252.36682 * 10 9 7 36 36 H 1.09006 * 110.36237 * 207.90697 * 13 11 10 37 37 H 1.08996 * 110.36886 * 330.22213 * 13 11 10 38 38 H 1.09002 * 110.36607 * 118.84520 * 14 13 11 39 39 H 1.08998 * 110.36660 * 241.15664 * 14 13 11 40 40 H 1.08994 * 109.75059 * 107.63224 * 17 9 7 41 41 H 1.09007 * 109.78644 * 346.91812 * 17 9 7 42 42 H 0.97000 * 119.99612 * 180.02562 * 22 21 19 43 43 H 1.08996 * 110.61792 * 81.47200 * 27 5 4 44 44 H 1.09004 * 110.61525 * 204.31600 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0252 0.0000 4 6 2.0571 -0.7477 1.2402 5 6 2.9243 -1.8887 0.6550 6 1 2.3613 -2.8208 0.6076 7 6 4.1889 -2.0675 1.4550 8 8 4.5894 -1.1694 2.1651 9 7 4.8750 -3.2252 1.3815 10 6 4.3490 -4.3627 0.6101 11 6 5.4875 -4.9093 -0.2692 12 1 5.1664 -5.7349 -0.9043 13 6 6.0596 -3.7307 -1.0891 14 6 7.1675 -3.1307 -0.1988 15 6 7.1648 -4.0016 1.0779 16 1 8.1584 -4.1144 1.5120 17 6 6.1663 -3.3787 2.0704 18 7 6.5946 -5.2977 0.6379 19 6 6.9969 -6.5592 0.9875 20 1 6.6694 -7.4101 0.4088 21 6 7.8254 -6.7441 2.0858 22 7 8.0817 -5.7372 2.8937 23 14 8.5767 -8.4220 2.4170 24 1 9.9360 -8.4819 1.8221 25 1 8.6675 -8.6431 3.8826 26 1 7.7237 -9.4749 1.8095 27 6 3.2399 -1.3601 -0.7675 28 8 2.0188 -0.6964 -1.1585 29 1 -0.3633 -1.0277 -0.0080 30 1 -0.3633 0.5069 0.8939 31 1 -0.3633 0.5206 -0.8860 32 1 1.2294 -1.1563 1.8197 33 1 2.6644 -0.0843 1.8559 34 1 3.5240 -4.0304 -0.0201 35 1 4.0032 -5.1408 1.2906 36 1 6.4808 -4.0908 -2.0278 37 1 5.2836 -2.9895 -1.2801 38 1 8.1334 -3.1956 -0.6997 39 1 6.9363 -2.0945 0.0480 40 1 6.0478 -4.0338 2.9335 41 1 6.5295 -2.4036 2.3953 42 1 8.6609 -5.8664 3.6610 43 1 4.0689 -0.6531 -0.7390 44 1 3.4641 -2.1859 -1.4428 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029367157.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:15 Heat of formation + Delta-G solvation = -62.352366 kcal Electronic energy + Delta-G solvation = -25636.713511 eV Core-core repulsion = 22168.116359 eV Total energy + Delta-G solvation = -3468.597152 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.91453 -40.41266 -39.02434 -35.49066 -34.18812 -33.46144 -32.87621 -31.91061 -31.02726 -27.99778 -26.84148 -25.82888 -25.49732 -23.81286 -22.15697 -21.26797 -21.10491 -20.06897 -18.96509 -18.04262 -17.26236 -16.98419 -16.69700 -16.37584 -16.25026 -15.81158 -15.56718 -15.21283 -14.68123 -14.53784 -14.41896 -14.19173 -13.66206 -13.46898 -13.41893 -13.28020 -13.08351 -12.89679 -12.85367 -12.69970 -12.57633 -12.29214 -11.97857 -11.86440 -11.80600 -11.67973 -11.49059 -11.43427 -11.12152 -10.88654 -10.71755 -10.60981 -9.74805 -8.70640 -7.85342 -5.21344 1.48679 1.50198 1.56458 1.58181 2.03941 2.50887 2.84304 3.34799 3.38154 3.49135 3.66008 3.76172 3.98388 4.07488 4.11837 4.13976 4.17328 4.25740 4.31889 4.38849 4.47177 4.58375 4.65216 4.66405 4.76749 4.83936 4.86353 4.96607 4.97263 4.99946 5.08550 5.11047 5.13139 5.16022 5.29419 5.33436 5.41137 5.54046 5.58177 5.83180 5.87960 6.23137 6.58141 7.05953 7.17823 7.73425 8.51880 9.26290 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031716 B = 0.004273 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.622658 B = 6551.451426 C = 6709.259106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 H 0.069 0.931 4 C -0.138 4.138 5 C -0.139 4.139 6 H 0.126 0.874 7 C 0.515 3.485 8 O -0.591 6.591 9 N -0.589 5.589 10 C 0.096 3.904 11 C 0.127 3.873 12 H 0.098 0.902 13 C -0.114 4.114 14 C -0.128 4.128 15 C 0.165 3.835 16 H 0.077 0.923 17 C 0.128 3.872 18 N -0.605 5.605 19 C -0.230 4.230 20 H 0.083 0.917 21 C -0.056 4.056 22 N -0.939 5.939 23 Si 0.970 3.030 24 H -0.292 1.292 25 H -0.302 1.302 26 H -0.267 1.267 27 C 0.069 3.931 28 O -0.379 6.379 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.038 0.962 41 H 0.054 0.946 42 H 0.246 0.754 43 H 0.055 0.945 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.397 7.768 -8.754 17.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.013 3.987 3 H 0.087 0.913 4 C -0.176 4.176 5 C -0.161 4.161 6 H 0.144 0.856 7 C 0.304 3.696 8 O -0.473 6.473 9 N -0.320 5.320 10 C -0.028 4.028 11 C 0.020 3.980 12 H 0.116 0.884 13 C -0.152 4.152 14 C -0.167 4.167 15 C 0.057 3.943 16 H 0.095 0.905 17 C 0.003 3.997 18 N -0.326 5.326 19 C -0.359 4.359 20 H 0.101 0.899 21 C -0.251 4.251 22 N -0.587 5.587 23 Si 0.800 3.200 24 H -0.220 1.220 25 H -0.229 1.229 26 H -0.192 1.192 27 C -0.008 4.008 28 O -0.299 6.299 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.132 0.868 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.159 8.035 -8.433 17.574 hybrid contribution 1.160 -0.913 1.275 1.951 sum -11.999 7.122 -7.158 15.683 Atomic orbital electron populations 1.21925 0.91763 1.03323 1.03277 1.22875 0.96538 0.95628 0.83700 0.91286 1.22999 0.99539 0.96402 0.98635 1.22901 0.93866 1.02667 0.96645 0.85630 1.20765 0.85659 0.81251 0.81887 1.90622 1.70889 1.42759 1.43008 1.48214 1.21006 1.13121 1.49641 1.22639 0.97646 0.87615 0.94902 1.22260 0.88240 0.96072 0.91441 0.88436 1.22490 0.97695 0.97239 0.97816 1.22502 0.99052 0.97992 0.97168 1.21720 0.96155 0.84481 0.91922 0.90472 1.21961 0.83687 0.98441 0.95580 1.45355 1.33522 1.01043 1.52699 1.19342 1.25116 0.84134 1.07311 0.89896 1.25546 1.02723 1.00411 0.96380 1.70039 1.41072 1.31500 1.16067 0.85180 0.78348 0.80312 0.76142 1.21964 1.22904 1.19211 1.23465 0.87681 0.97069 0.92587 1.88871 1.39284 1.67827 1.33884 0.91556 0.89780 0.91526 0.88533 0.90706 0.86846 0.93072 0.90991 0.90193 0.92724 0.92752 0.94366 0.92730 0.94509 0.92656 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.37 71.98 0.67 -1.44 16 2 C 0.07 1.38 4.05 30.97 0.13 1.50 16 3 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 4 C -0.14 -3.07 6.17 31.58 0.19 -2.88 16 5 C -0.14 -3.36 2.52 -10.24 -0.03 -3.39 16 6 H 0.13 2.52 6.57 -2.39 -0.02 2.51 16 7 C 0.52 17.46 6.92 87.66 0.61 18.07 16 8 O -0.59 -24.55 15.06 -3.06 -0.05 -24.60 16 9 N -0.59 -21.27 2.25 -814.83 -1.84 -23.10 16 10 C 0.10 2.96 5.69 86.56 0.49 3.46 16 11 C 0.13 4.32 4.32 45.47 0.20 4.52 16 12 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 13 C -0.11 -3.39 6.18 31.55 0.20 -3.19 16 14 C -0.13 -4.67 6.18 31.55 0.20 -4.48 16 15 C 0.16 7.50 3.14 45.49 0.14 7.64 16 16 H 0.08 4.15 6.37 -2.38 -0.02 4.13 16 17 C 0.13 5.75 5.78 86.57 0.50 6.25 16 18 N -0.60 -27.69 2.81 -636.63 -1.79 -29.47 16 19 C -0.23 -11.78 10.37 84.03 0.87 -10.91 16 20 H 0.08 4.05 7.84 -2.91 -0.02 4.02 16 21 C -0.06 -3.01 5.42 84.86 0.46 -2.55 16 22 N -0.94 -53.39 10.38 21.65 0.22 -53.17 16 23 Si 0.97 43.87 29.56 68.60 2.03 45.90 16 24 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 25 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 27 C 0.07 1.52 6.62 72.67 0.48 2.00 16 28 O -0.38 -8.57 11.19 -148.98 -1.67 -10.24 16 29 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.10 1.81 7.70 -2.39 -0.02 1.79 16 33 H 0.07 2.02 6.80 -2.39 -0.02 2.01 16 34 H 0.11 2.47 5.48 -2.39 -0.01 2.45 16 35 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.08 1.95 5.98 -2.39 -0.01 1.94 16 38 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.05 1.94 7.84 -2.39 -0.02 1.93 16 40 H 0.04 2.01 7.78 -2.39 -0.02 2.00 16 41 H 0.05 2.54 7.16 -2.38 -0.02 2.52 16 42 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 43 H 0.06 1.35 8.04 -2.39 -0.02 1.33 16 44 H 0.12 2.16 6.63 -2.38 -0.02 2.14 16 Total: -1.00 -65.08 332.94 3.02 -62.06 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.99 Total: 18.03 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 5.11 Total: 14.60 kcal Atomic # 7 Polarization: -102.35 SS G_CDS: -3.40 Total: -105.75 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -1.71 Total: -34.84 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -65.08 3.02 -62.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029367157.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.296 kcal (2) G-P(sol) polarization free energy of solvation -65.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds