Wall clock time and date at job start Tue Mar 31 2020 07:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.99314 * 2 1 4 4 O 1.43742 * 109.87713 * 121.08815 * 2 1 3 5 5 C 1.44380 * 106.97460 * 145.93543 * 4 2 1 6 6 C 1.55222 * 103.56781 * 320.00985 * 5 4 2 7 7 C 1.54106 * 109.87683 * 238.91765 * 2 1 3 8 8 H 1.08997 * 110.48767 * 119.73971 * 7 2 1 9 9 C 1.50697 * 110.48657 * 357.22009 * 7 2 1 10 10 O 1.21284 * 120.00477 * 288.73736 * 9 7 2 11 11 N 1.34780 * 119.99903 * 108.73602 * 9 7 2 12 12 C 1.47167 * 120.71261 * 184.38181 * 11 9 7 13 13 C 1.53881 * 108.03093 * 132.74813 * 12 11 9 14 14 H 1.08995 * 112.57729 * 182.22129 * 13 12 11 15 15 C 1.54130 * 107.71280 * 306.32604 * 13 12 11 16 16 C 1.54273 * 104.89109 * 89.41149 * 15 13 12 17 17 C 1.54544 * 104.85134 * 359.80790 * 16 15 13 18 18 H 1.09002 * 112.18124 * 146.40898 * 17 16 15 19 19 C 1.49251 * 120.76812 * 4.45499 * 11 9 7 20 20 N 1.48308 * 104.35430 * 24.70286 * 17 16 15 21 21 C 1.36934 * 128.07637 * 139.07986 * 20 17 16 22 22 H 1.08002 * 120.00165 * 345.38119 * 21 20 17 23 23 C 1.38812 * 120.00007 * 165.38157 * 21 20 17 24 24 N 1.31619 * 120.00049 * 350.50056 * 23 21 20 25 25 Si 1.86804 * 120.00105 * 170.50682 * 23 21 20 26 26 H 1.48495 * 109.47259 * 179.97438 * 25 23 21 27 27 H 1.48500 * 109.46924 * 299.99777 * 25 23 21 28 28 H 1.48498 * 109.47129 * 59.99583 * 25 23 21 29 29 H 1.08998 * 109.47522 * 187.57362 * 1 2 3 30 30 H 1.09000 * 109.46618 * 307.57726 * 1 2 3 31 31 H 1.09004 * 109.46858 * 67.57331 * 1 2 3 32 32 H 1.09000 * 110.61623 * 78.43789 * 5 4 2 33 33 H 1.08997 * 110.61656 * 201.27463 * 5 4 2 34 34 H 1.08999 * 110.89025 * 278.75127 * 6 5 4 35 35 H 1.09004 * 111.02550 * 155.07313 * 6 5 4 36 36 H 1.09003 * 109.74842 * 13.11285 * 12 11 9 37 37 H 1.09002 * 109.78851 * 252.40752 * 12 11 9 38 38 H 1.09005 * 110.50158 * 330.47275 * 15 13 12 39 39 H 1.09004 * 110.27740 * 208.23618 * 15 13 12 40 40 H 1.09003 * 110.36579 * 240.96642 * 16 15 13 41 41 H 1.09000 * 110.36687 * 118.65354 * 16 15 13 42 42 H 1.08999 * 110.51167 * 107.81947 * 19 11 9 43 43 H 1.08996 * 109.74500 * 346.60674 * 19 11 9 44 44 H 0.97001 * 120.00023 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 8 2.0188 -0.6980 1.1576 5 6 3.2379 -1.3642 0.7646 6 6 2.9216 -1.8915 -0.6606 7 6 2.0540 -0.7482 -1.2412 8 1 2.6600 -0.0853 -1.8586 9 6 0.9073 -1.3104 -2.0412 10 8 0.2728 -2.2512 -1.6131 11 7 0.5868 -0.7677 -3.2325 12 6 -0.5878 -1.2408 -3.9824 13 6 -1.3833 -0.0087 -4.4484 14 1 -2.2953 -0.2767 -4.9818 15 6 -1.6706 0.8605 -3.2084 16 6 -0.4617 1.8131 -3.1033 17 6 0.4504 1.4280 -4.2900 18 1 0.9792 2.2890 -4.6989 19 6 1.4156 0.3249 -3.8216 20 7 -0.4705 0.8150 -5.2777 21 6 -0.4796 0.9765 -6.6374 22 1 0.0794 1.7826 -7.0893 23 6 -1.2072 0.1040 -7.4352 24 7 -1.7335 -0.9828 -6.9117 25 14 -1.4393 0.4725 -9.2517 26 1 -2.2472 -0.6057 -9.8762 27 1 -2.1417 1.7715 -9.4075 28 1 -0.1129 0.5443 -9.9157 29 1 -0.3634 -1.0187 0.1354 30 1 -0.3632 0.6267 0.8145 31 1 -0.3633 0.3921 -0.9500 32 1 4.0685 -0.6590 0.7355 33 1 3.4599 -2.1891 1.4417 34 1 2.3572 -2.8228 -0.6141 35 1 3.8348 -2.0202 -1.2416 36 1 -1.2117 -1.8598 -3.3375 37 1 -0.2647 -1.8196 -4.8477 38 1 -1.7430 0.2396 -2.3154 39 1 -2.5901 1.4285 -3.3500 40 1 0.0603 1.6608 -2.1587 41 1 -0.7864 2.8496 -3.1953 42 1 1.9901 -0.0467 -4.6701 43 1 2.0912 0.7234 -3.0648 44 1 -2.2422 -1.5923 -7.4690 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029527072.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:47 Heat of formation + Delta-G solvation = -35.589587 kcal Electronic energy + Delta-G solvation = -26145.366593 eV Core-core repulsion = 22677.929963 eV Total energy + Delta-G solvation = -3467.436630 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.69687 -39.06496 -37.42592 -33.72153 -32.46492 -32.36902 -31.45643 -30.59743 -29.28283 -26.68042 -25.93168 -23.93076 -23.73538 -22.19640 -21.76954 -19.76300 -19.40686 -18.32798 -17.33866 -16.57060 -16.03605 -15.72312 -15.51161 -15.30489 -14.70652 -14.43630 -13.98323 -13.69730 -13.23871 -12.98966 -12.92883 -12.64911 -12.36518 -12.15310 -12.07141 -11.83563 -11.52415 -11.43686 -11.17273 -11.07796 -10.96205 -10.90753 -10.87754 -10.64657 -10.38046 -10.09467 -9.89375 -9.77944 -9.68403 -9.59985 -9.14058 -8.79655 -8.06469 -6.88673 -5.87647 -3.23456 3.01395 3.33309 3.38839 3.39944 3.51024 3.82940 4.37394 4.51499 4.67100 4.83197 4.95652 5.04827 5.15298 5.25095 5.28393 5.42136 5.48614 5.55409 5.58825 5.64774 5.70182 5.71274 5.79828 5.88557 5.93625 6.04637 6.09008 6.17101 6.26656 6.36402 6.44086 6.48477 6.60966 6.68236 6.80060 6.83026 6.88387 6.94673 7.27935 7.46144 7.66182 8.04226 8.10242 8.70028 9.01482 9.63932 10.39934 11.25090 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030883 B = 0.004720 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.420166 B = 5930.504649 C = 6066.044083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.097 3.903 3 H 0.072 0.928 4 O -0.371 6.371 5 C 0.049 3.951 6 C -0.140 4.140 7 C -0.151 4.151 8 H 0.102 0.898 9 C 0.521 3.479 10 O -0.553 6.553 11 N -0.594 5.594 12 C 0.113 3.887 13 C 0.169 3.831 14 H 0.118 0.882 15 C -0.139 4.139 16 C -0.126 4.126 17 C 0.133 3.867 18 H 0.077 0.923 19 C 0.092 3.908 20 N -0.583 5.583 21 C -0.230 4.230 22 H 0.076 0.924 23 C -0.001 4.001 24 N -0.912 5.912 25 Si 0.912 3.088 26 H -0.290 1.290 27 H -0.285 1.285 28 H -0.285 1.285 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.196 3.072 11.116 14.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.039 3.961 3 H 0.090 0.910 4 O -0.290 6.290 5 C -0.027 4.027 6 C -0.178 4.178 7 C -0.172 4.172 8 H 0.120 0.880 9 C 0.309 3.691 10 O -0.433 6.433 11 N -0.325 5.325 12 C -0.010 4.010 13 C 0.061 3.939 14 H 0.136 0.864 15 C -0.178 4.178 16 C -0.165 4.165 17 C 0.024 3.976 18 H 0.095 0.905 19 C -0.033 4.033 20 N -0.304 5.304 21 C -0.358 4.358 22 H 0.094 0.906 23 C -0.199 4.199 24 N -0.558 5.558 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.212 1.212 28 H -0.211 1.211 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.634 2.473 11.243 13.813 hybrid contribution 0.176 0.182 -1.291 1.315 sum 7.810 2.655 9.953 12.927 Atomic orbital electron populations 1.22340 0.93246 1.04407 1.02828 1.22504 0.95848 0.94601 0.83186 0.90976 1.88890 1.39587 1.67673 1.32885 1.23545 0.87675 0.96280 0.95228 1.23159 0.99644 0.99073 0.95950 1.22926 0.97331 0.99073 0.97906 0.88007 1.19920 0.84886 0.83085 0.81255 1.90639 1.53972 1.28509 1.70137 1.48774 1.28598 1.36426 1.18750 1.22417 0.85693 0.98273 0.94592 1.21803 0.95215 0.88600 0.88278 0.86436 1.22628 0.97260 0.98409 0.99479 1.22559 0.97337 0.98902 0.97688 1.21941 0.91440 0.93790 0.90388 0.90451 1.23007 0.93713 0.89256 0.97283 1.45146 1.30731 1.53183 1.01335 1.18940 1.27859 1.09283 0.79698 0.90626 1.24830 1.01331 0.95685 0.98006 1.69831 1.39134 1.11782 1.35045 0.86212 0.77752 0.77254 0.84558 1.21584 1.21158 1.21125 0.90149 0.92308 0.90045 0.92269 0.88920 0.89007 0.90041 0.91434 0.90396 0.92691 0.92793 0.92676 0.92536 0.91247 0.91463 0.93380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 8.39 37.16 0.31 -2.21 16 2 C 0.10 1.30 4.06 -26.15 -0.11 1.19 16 3 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 4 O -0.37 -5.25 11.19 -35.23 -0.39 -5.64 16 5 C 0.05 0.54 7.72 38.33 0.30 0.83 16 6 C -0.14 -1.71 6.67 -24.60 -0.16 -1.88 16 7 C -0.15 -2.06 3.04 -90.24 -0.27 -2.34 16 8 H 0.10 1.20 5.47 -51.93 -0.28 0.91 16 9 C 0.52 9.17 4.64 -10.98 -0.05 9.11 16 10 O -0.55 -11.50 14.05 5.55 0.08 -11.42 16 11 N -0.59 -10.90 2.28 -169.81 -0.39 -11.28 16 12 C 0.11 2.44 5.79 -3.22 -0.02 2.42 16 13 C 0.17 3.72 3.11 -65.88 -0.20 3.51 16 14 H 0.12 2.98 6.36 -51.93 -0.33 2.65 16 15 C -0.14 -2.58 6.01 -25.47 -0.15 -2.73 16 16 C -0.13 -2.07 6.03 -25.25 -0.15 -2.22 16 17 C 0.13 2.42 4.27 -65.66 -0.28 2.14 16 18 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 19 C 0.09 1.52 5.90 -2.06 -0.01 1.51 16 20 N -0.58 -13.30 2.80 -152.85 -0.43 -13.73 16 21 C -0.23 -5.85 10.37 -15.06 -0.16 -6.00 16 22 H 0.08 1.87 7.85 -52.49 -0.41 1.46 16 23 C 0.00 -0.03 5.42 -17.43 -0.09 -0.12 16 24 N -0.91 -24.74 10.42 55.49 0.58 -24.16 16 25 Si 0.91 20.88 29.56 -169.99 -5.03 15.86 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 H 0.08 1.38 6.69 -51.93 -0.35 1.04 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.25 3.17 -51.93 -0.16 1.08 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.33 7.21 -51.93 -0.37 0.95 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.49 7.15 -51.93 -0.37 1.12 16 37 H 0.08 1.93 7.83 -51.93 -0.41 1.53 16 38 H 0.05 1.00 6.34 -51.93 -0.33 0.67 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.81 5.84 -51.93 -0.30 0.50 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.07 0.87 5.39 -51.93 -0.28 0.59 16 44 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 323.94 15.07 4.88 4.88 Total: -1.00 -29.06 323.94 -8.30 -37.37 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -6.54 Total: 4.91 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -1.06 Total: 3.22 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.24 Total: -49.17 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.32 Total: -17.07 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.06 -8.30 -37.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029527072.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.776 kcal (2) G-P(sol) polarization free energy of solvation -29.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds