Wall clock time and date at job start Tue Mar 31 2020 07:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.99314 * 2 1 4 4 O 1.43742 * 109.87713 * 121.08815 * 2 1 3 5 5 C 1.44380 * 106.97460 * 145.93543 * 4 2 1 6 6 C 1.55222 * 103.56781 * 320.00985 * 5 4 2 7 7 C 1.54106 * 109.87683 * 238.91765 * 2 1 3 8 8 H 1.08997 * 110.48767 * 119.73971 * 7 2 1 9 9 C 1.50697 * 110.48657 * 357.22009 * 7 2 1 10 10 O 1.21284 * 120.00477 * 288.73736 * 9 7 2 11 11 N 1.34780 * 119.99903 * 108.73602 * 9 7 2 12 12 C 1.47167 * 120.71261 * 184.38181 * 11 9 7 13 13 C 1.53881 * 108.03093 * 132.74813 * 12 11 9 14 14 H 1.08995 * 112.57729 * 182.22129 * 13 12 11 15 15 C 1.54130 * 107.71280 * 306.32604 * 13 12 11 16 16 C 1.54273 * 104.89109 * 89.41149 * 15 13 12 17 17 C 1.54544 * 104.85134 * 359.80790 * 16 15 13 18 18 H 1.09002 * 112.18124 * 146.40898 * 17 16 15 19 19 C 1.49251 * 120.76812 * 4.45499 * 11 9 7 20 20 N 1.48308 * 104.35430 * 24.70286 * 17 16 15 21 21 C 1.36934 * 128.07637 * 139.07986 * 20 17 16 22 22 H 1.08002 * 120.00165 * 345.38119 * 21 20 17 23 23 C 1.38812 * 120.00007 * 165.38157 * 21 20 17 24 24 N 1.31619 * 120.00049 * 350.50056 * 23 21 20 25 25 Si 1.86804 * 120.00105 * 170.50682 * 23 21 20 26 26 H 1.48495 * 109.47259 * 179.97438 * 25 23 21 27 27 H 1.48500 * 109.46924 * 299.99777 * 25 23 21 28 28 H 1.48498 * 109.47129 * 59.99583 * 25 23 21 29 29 H 1.08998 * 109.47522 * 187.57362 * 1 2 3 30 30 H 1.09000 * 109.46618 * 307.57726 * 1 2 3 31 31 H 1.09004 * 109.46858 * 67.57331 * 1 2 3 32 32 H 1.09000 * 110.61623 * 78.43789 * 5 4 2 33 33 H 1.08997 * 110.61656 * 201.27463 * 5 4 2 34 34 H 1.08999 * 110.89025 * 278.75127 * 6 5 4 35 35 H 1.09004 * 111.02550 * 155.07313 * 6 5 4 36 36 H 1.09003 * 109.74842 * 13.11285 * 12 11 9 37 37 H 1.09002 * 109.78851 * 252.40752 * 12 11 9 38 38 H 1.09005 * 110.50158 * 330.47275 * 15 13 12 39 39 H 1.09004 * 110.27740 * 208.23618 * 15 13 12 40 40 H 1.09003 * 110.36579 * 240.96642 * 16 15 13 41 41 H 1.09000 * 110.36687 * 118.65354 * 16 15 13 42 42 H 1.08999 * 110.51167 * 107.81947 * 19 11 9 43 43 H 1.08996 * 109.74500 * 346.60674 * 19 11 9 44 44 H 0.97001 * 120.00023 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 8 2.0188 -0.6980 1.1576 5 6 3.2379 -1.3642 0.7646 6 6 2.9216 -1.8915 -0.6606 7 6 2.0540 -0.7482 -1.2412 8 1 2.6600 -0.0853 -1.8586 9 6 0.9073 -1.3104 -2.0412 10 8 0.2728 -2.2512 -1.6131 11 7 0.5868 -0.7677 -3.2325 12 6 -0.5878 -1.2408 -3.9824 13 6 -1.3833 -0.0087 -4.4484 14 1 -2.2953 -0.2767 -4.9818 15 6 -1.6706 0.8605 -3.2084 16 6 -0.4617 1.8131 -3.1033 17 6 0.4504 1.4280 -4.2900 18 1 0.9792 2.2890 -4.6989 19 6 1.4156 0.3249 -3.8216 20 7 -0.4705 0.8150 -5.2777 21 6 -0.4796 0.9765 -6.6374 22 1 0.0794 1.7826 -7.0893 23 6 -1.2072 0.1040 -7.4352 24 7 -1.7335 -0.9828 -6.9117 25 14 -1.4393 0.4725 -9.2517 26 1 -2.2472 -0.6057 -9.8762 27 1 -2.1417 1.7715 -9.4075 28 1 -0.1129 0.5443 -9.9157 29 1 -0.3634 -1.0187 0.1354 30 1 -0.3632 0.6267 0.8145 31 1 -0.3633 0.3921 -0.9500 32 1 4.0685 -0.6590 0.7355 33 1 3.4599 -2.1891 1.4417 34 1 2.3572 -2.8228 -0.6141 35 1 3.8348 -2.0202 -1.2416 36 1 -1.2117 -1.8598 -3.3375 37 1 -0.2647 -1.8196 -4.8477 38 1 -1.7430 0.2396 -2.3154 39 1 -2.5901 1.4285 -3.3500 40 1 0.0603 1.6608 -2.1587 41 1 -0.7864 2.8496 -3.1953 42 1 1.9901 -0.0467 -4.6701 43 1 2.0912 0.7234 -3.0648 44 1 -2.2422 -1.5923 -7.4690 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029527072.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:47 Heat of formation + Delta-G solvation = -53.549751 kcal Electronic energy + Delta-G solvation = -26146.145404 eV Core-core repulsion = 22677.929963 eV Total energy + Delta-G solvation = -3468.215442 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.01430 -40.36661 -38.81905 -35.36461 -34.16187 -33.57118 -32.48924 -32.10606 -31.00486 -28.07557 -27.23633 -25.50709 -25.36260 -23.12749 -23.03787 -21.23343 -21.03366 -19.83472 -18.64257 -18.05858 -17.30860 -16.99136 -16.71786 -16.55803 -16.47896 -15.73693 -15.56615 -15.10123 -14.66524 -14.58878 -14.35022 -13.87644 -13.71524 -13.49849 -13.37884 -13.22087 -12.93485 -12.86306 -12.75876 -12.65016 -12.53849 -12.19236 -12.01464 -11.95389 -11.82699 -11.77069 -11.44766 -11.42271 -11.12414 -10.83980 -10.68614 -10.42746 -9.69394 -8.69820 -7.84032 -5.19392 1.49486 1.51127 1.57162 1.65416 2.07335 2.51913 2.89367 3.35659 3.39970 3.49894 3.58187 3.82749 3.99570 4.09405 4.14673 4.16063 4.25087 4.31895 4.33124 4.41675 4.43661 4.59928 4.61457 4.66756 4.77894 4.86069 4.86564 4.91313 4.98096 5.00584 5.08263 5.10478 5.12032 5.17643 5.29513 5.32861 5.47195 5.56246 5.59063 5.85094 5.96097 6.23720 6.61931 7.06713 7.27818 7.74898 8.53194 9.27410 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030883 B = 0.004720 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.420166 B = 5930.504649 C = 6066.044083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.097 3.903 3 H 0.108 0.892 4 O -0.395 6.395 5 C 0.050 3.950 6 C -0.141 4.141 7 C -0.146 4.146 8 H 0.133 0.867 9 C 0.520 3.480 10 O -0.592 6.592 11 N -0.596 5.596 12 C 0.132 3.868 13 C 0.167 3.833 14 H 0.075 0.925 15 C -0.130 4.130 16 C -0.113 4.113 17 C 0.127 3.873 18 H 0.097 0.903 19 C 0.096 3.904 20 N -0.603 5.603 21 C -0.230 4.230 22 H 0.084 0.916 23 C -0.057 4.057 24 N -0.940 5.940 25 Si 0.970 3.030 26 H -0.302 1.302 27 H -0.281 1.281 28 H -0.278 1.278 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.059 0.941 35 H 0.108 0.892 36 H 0.050 0.950 37 H 0.035 0.965 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.118 0.882 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.026 5.686 12.643 17.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.039 3.961 3 H 0.126 0.874 4 O -0.314 6.314 5 C -0.026 4.026 6 C -0.179 4.179 7 C -0.167 4.167 8 H 0.151 0.849 9 C 0.310 3.690 10 O -0.473 6.473 11 N -0.327 5.327 12 C 0.007 3.993 13 C 0.059 3.941 14 H 0.093 0.907 15 C -0.169 4.169 16 C -0.152 4.152 17 C 0.020 3.980 18 H 0.115 0.885 19 C -0.028 4.028 20 N -0.325 5.325 21 C -0.359 4.359 22 H 0.102 0.898 23 C -0.251 4.251 24 N -0.588 5.588 25 Si 0.799 3.201 26 H -0.229 1.229 27 H -0.207 1.207 28 H -0.204 1.204 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.078 0.922 35 H 0.127 0.873 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.136 0.864 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.508 5.125 12.796 17.333 hybrid contribution -0.701 -0.678 -1.710 1.969 sum 9.807 4.446 11.086 15.455 Atomic orbital electron populations 1.22280 0.94915 1.02454 1.02970 1.22642 0.94619 0.96126 0.82682 0.87404 1.88869 1.41127 1.68169 1.33284 1.23762 0.87383 0.97242 0.94178 1.23195 1.00002 0.97187 0.97550 1.23024 0.95746 1.00051 0.97840 0.84948 1.20704 0.85351 0.82255 0.80709 1.90631 1.55523 1.30337 1.70858 1.48779 1.27845 1.37123 1.18975 1.21856 0.86911 0.97548 0.93002 1.21589 0.93757 0.89428 0.89345 0.90739 1.22490 0.98622 0.98305 0.97492 1.22500 0.95765 0.98804 0.98112 1.22255 0.91446 0.94535 0.89805 0.88477 1.23075 0.93455 0.87858 0.98370 1.45326 1.32406 1.53462 1.01315 1.19296 1.26639 1.08730 0.81243 0.89834 1.25527 1.02182 0.95978 1.01413 1.70044 1.40347 1.12731 1.35669 0.85286 0.77526 0.76530 0.80712 1.22890 1.20716 1.20403 0.93634 0.90792 0.90728 0.89012 0.87875 0.92194 0.87335 0.93152 0.94680 0.92585 0.92920 0.89946 0.91052 0.92646 0.86405 0.94555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.62 8.39 71.98 0.60 -4.02 16 2 C 0.10 2.22 4.06 30.97 0.13 2.35 16 3 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 4 O -0.39 -9.84 11.19 -148.98 -1.67 -11.51 16 5 C 0.05 0.89 7.72 72.74 0.56 1.45 16 6 C -0.14 -3.03 6.67 31.98 0.21 -2.81 16 7 C -0.15 -3.44 3.04 -10.55 -0.03 -3.47 16 8 H 0.13 2.29 5.47 -2.39 -0.01 2.28 16 9 C 0.52 17.74 4.64 87.66 0.41 18.15 16 10 O -0.59 -25.22 14.05 -3.04 -0.04 -25.26 16 11 N -0.60 -21.43 2.28 -809.53 -1.85 -23.28 16 12 C 0.13 5.95 5.79 86.55 0.50 6.46 16 13 C 0.17 7.60 3.11 45.32 0.14 7.74 16 14 H 0.07 4.04 6.36 -2.39 -0.02 4.02 16 15 C -0.13 -4.77 6.01 31.41 0.19 -4.58 16 16 C -0.11 -3.35 6.03 31.55 0.19 -3.16 16 17 C 0.13 4.24 4.27 45.47 0.19 4.44 16 18 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 19 C 0.10 2.87 5.90 86.14 0.51 3.38 16 20 N -0.60 -27.46 2.80 -637.50 -1.79 -29.25 16 21 C -0.23 -11.74 10.37 84.03 0.87 -10.86 16 22 H 0.08 4.04 7.85 -2.91 -0.02 4.01 16 23 C -0.06 -3.04 5.42 84.86 0.46 -2.58 16 24 N -0.94 -53.72 10.42 21.65 0.23 -53.49 16 25 Si 0.97 43.84 29.56 68.60 2.03 45.86 16 26 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 27 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 28 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 29 H 0.04 1.56 6.69 -2.39 -0.02 1.54 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.07 2.10 3.17 -2.38 -0.01 2.09 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.06 1.69 7.21 -2.39 -0.02 1.67 16 35 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.05 2.39 7.15 -2.39 -0.02 2.37 16 37 H 0.03 1.86 7.83 -2.39 -0.02 1.84 16 38 H 0.06 2.03 6.34 -2.38 -0.02 2.01 16 39 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.08 2.01 5.84 -2.39 -0.01 2.00 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.12 2.36 5.39 -2.39 -0.01 2.35 16 44 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -67.99 323.94 2.85 -65.14 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 1.01 Total: 19.31 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 4.93 Total: 12.48 kcal Atomic # 7 Polarization: -102.62 SS G_CDS: -3.41 Total: -106.03 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -1.71 Total: -36.76 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -67.99 2.85 -65.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029527072.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.588 kcal (2) G-P(sol) polarization free energy of solvation -67.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds