Wall clock time and date at job start Tue Mar 31 2020 07:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.67217 * 2 1 4 4 O 1.44386 * 110.61653 * 237.04216 * 2 1 3 5 5 C 1.43744 * 106.97237 * 201.43843 * 4 2 1 6 6 C 1.54100 * 107.29524 * 26.50743 * 5 4 2 7 7 C 1.54808 * 104.18901 * 357.97541 * 6 5 4 8 8 H 1.08997 * 110.90863 * 97.34472 * 7 6 5 9 9 C 1.50695 * 110.90757 * 220.91783 * 7 6 5 10 10 O 1.21289 * 120.00039 * 118.54615 * 9 7 6 11 11 N 1.34774 * 120.00326 * 298.54498 * 9 7 6 12 12 C 1.47162 * 120.71627 * 179.97438 * 11 9 7 13 13 C 1.53881 * 108.03240 * 132.73475 * 12 11 9 14 14 H 1.09010 * 112.09625 * 181.91485 * 13 12 11 15 15 C 1.54542 * 108.37271 * 306.25310 * 13 12 11 16 16 C 1.54827 * 104.74404 * 89.16980 * 15 13 12 17 17 C 1.54550 * 104.74433 * 0.02562 * 16 15 13 18 18 H 1.08999 * 112.68166 * 146.80338 * 17 16 15 19 19 C 1.47162 * 120.70564 * 359.97438 * 11 9 7 20 20 N 1.48306 * 107.20904 * 58.36392 * 13 12 11 21 21 C 1.36940 * 128.07917 * 106.09414 * 20 13 12 22 22 H 1.07998 * 119.99888 * 165.13522 * 21 20 13 23 23 C 1.38813 * 119.99801 * 345.13927 * 21 20 13 24 24 N 1.31623 * 120.00158 * 350.71996 * 23 21 20 25 25 Si 1.86800 * 119.99833 * 170.72098 * 23 21 20 26 26 H 1.48499 * 109.47174 * 269.99593 * 25 23 21 27 27 H 1.48504 * 109.47195 * 30.00057 * 25 23 21 28 28 H 1.48497 * 109.46989 * 149.99545 * 25 23 21 29 29 H 1.08996 * 109.46867 * 297.03084 * 1 2 3 30 30 H 1.08999 * 109.47593 * 57.03308 * 1 2 3 31 31 H 1.09002 * 109.46777 * 177.03490 * 1 2 3 32 32 H 1.09008 * 109.87401 * 267.08692 * 5 4 2 33 33 H 1.09000 * 110.00385 * 146.00965 * 5 4 2 34 34 H 1.08999 * 110.48940 * 239.29428 * 6 5 4 35 35 H 1.09006 * 110.48244 * 116.64949 * 6 5 4 36 36 H 1.09008 * 109.74654 * 13.10395 * 12 11 9 37 37 H 1.08999 * 109.79524 * 252.39815 * 12 11 9 38 38 H 1.09004 * 110.36967 * 208.14001 * 15 13 12 39 39 H 1.09008 * 110.36410 * 330.45615 * 15 13 12 40 40 H 1.08996 * 110.31050 * 241.25204 * 16 15 13 41 41 H 1.09005 * 110.61026 * 118.91357 * 16 15 13 42 42 H 1.08998 * 109.75646 * 346.89919 * 19 11 9 43 43 H 1.09001 * 109.75279 * 107.58258 * 19 11 9 44 44 H 0.96990 * 119.99795 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 8 2.0384 -0.7352 -1.1339 5 6 3.3840 -1.1253 -0.8120 6 6 3.4796 -1.2167 0.7233 7 6 2.0759 -0.7894 1.2170 8 1 1.4553 -1.6607 1.4262 9 6 2.1797 0.0977 2.4308 10 8 1.7552 1.2332 2.3901 11 7 2.7442 -0.3705 3.5615 12 6 2.8542 0.4824 4.7557 13 6 2.3693 -0.3313 5.9684 14 1 2.3915 0.2521 6.8890 15 6 0.9568 -0.8753 5.6566 16 6 1.2032 -2.2411 4.9703 17 6 2.7410 -2.3913 4.9340 18 1 3.0646 -3.4273 5.0346 19 6 3.2639 -1.7457 3.6282 20 7 3.2199 -1.5432 6.0523 21 6 4.2186 -1.8137 6.9494 22 1 4.5948 -2.8209 7.0511 23 6 4.7472 -0.7933 7.7280 24 7 4.4236 0.4583 7.4807 25 14 5.9178 -1.1966 9.1267 26 1 5.1425 -1.4106 10.3750 27 1 6.6763 -2.4301 8.7974 28 1 6.8654 -0.0696 9.3196 29 1 -0.3633 0.4670 0.9154 30 1 -0.3634 0.5592 -0.8622 31 1 -0.3633 -1.0263 -0.0532 32 1 4.0854 -0.3780 -1.1832 33 1 3.6071 -2.0956 -1.2557 34 1 4.2407 -0.5332 1.0995 35 1 3.6976 -2.2392 1.0318 36 1 2.2315 1.3687 4.6339 37 1 3.8926 0.7794 4.9028 38 1 0.3892 -1.0075 6.5778 39 1 0.4315 -0.2013 4.9799 40 1 0.7985 -2.2345 3.9583 41 1 0.7572 -3.0485 5.5512 42 1 2.9090 -2.3158 2.7697 43 1 4.3537 -1.7279 3.6333 44 1 4.7933 1.1713 8.0245 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029527075.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:50 Heat of formation + Delta-G solvation = -45.440030 kcal Electronic energy + Delta-G solvation = -25801.918014 eV Core-core repulsion = 22334.054237 eV Total energy + Delta-G solvation = -3467.863778 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.57477 -39.09592 -37.50343 -33.95341 -32.57422 -32.28430 -31.46865 -30.43814 -29.29328 -26.99831 -25.75938 -23.97628 -23.74295 -22.03660 -21.65599 -19.79940 -19.53437 -18.60572 -17.41664 -16.43841 -16.03973 -15.64290 -15.32180 -15.20077 -14.72033 -14.27789 -13.91280 -13.79649 -13.62410 -13.06629 -12.83113 -12.77449 -12.43424 -12.33998 -12.02720 -11.84438 -11.65116 -11.57657 -11.32880 -11.06142 -11.03046 -10.89930 -10.85614 -10.75083 -10.36792 -10.07057 -9.91009 -9.78461 -9.62520 -9.61130 -9.25990 -8.81548 -8.09649 -6.88908 -5.88672 -3.24575 3.01116 3.32411 3.38072 3.40089 3.48876 3.81294 4.36908 4.49361 4.64570 4.76766 4.93585 5.09572 5.16153 5.25307 5.27634 5.39185 5.54549 5.55944 5.58604 5.60809 5.68891 5.72665 5.77016 5.86682 5.90288 5.92047 6.06808 6.16809 6.20266 6.28276 6.34543 6.47909 6.59888 6.65080 6.75329 6.82810 6.85635 6.94586 7.25902 7.45640 7.65350 8.03669 8.09508 8.63615 9.00751 9.62993 10.39163 11.24074 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.004649 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.021937 B = 6021.678761 C = 6231.215381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.094 3.906 3 H 0.082 0.918 4 O -0.378 6.378 5 C 0.050 3.950 6 C -0.147 4.147 7 C -0.139 4.139 8 H 0.107 0.893 9 C 0.516 3.484 10 O -0.556 6.556 11 N -0.587 5.587 12 C 0.112 3.888 13 C 0.167 3.833 14 H 0.118 0.882 15 C -0.136 4.136 16 C -0.121 4.121 17 C 0.133 3.867 18 H 0.078 0.922 19 C 0.092 3.908 20 N -0.584 5.584 21 C -0.229 4.229 22 H 0.077 0.923 23 C -0.002 4.002 24 N -0.913 5.913 25 Si 0.912 3.088 26 H -0.288 1.288 27 H -0.281 1.281 28 H -0.291 1.291 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.477 -4.652 -11.850 13.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.036 3.964 3 H 0.100 0.900 4 O -0.297 6.297 5 C -0.027 4.027 6 C -0.185 4.185 7 C -0.160 4.160 8 H 0.125 0.875 9 C 0.303 3.697 10 O -0.436 6.436 11 N -0.318 5.318 12 C -0.011 4.011 13 C 0.060 3.940 14 H 0.136 0.864 15 C -0.175 4.175 16 C -0.161 4.161 17 C 0.024 3.976 18 H 0.096 0.904 19 C -0.033 4.033 20 N -0.305 5.305 21 C -0.356 4.356 22 H 0.094 0.906 23 C -0.199 4.199 24 N -0.559 5.559 25 Si 0.743 3.257 26 H -0.216 1.216 27 H -0.207 1.207 28 H -0.217 1.217 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.602 -3.998 -11.826 13.305 hybrid contribution 0.949 -0.223 0.926 1.344 sum -3.653 -4.221 -10.901 12.247 Atomic orbital electron populations 1.21738 0.92746 1.02441 1.02946 1.22925 0.95489 0.95397 0.82542 0.90013 1.88858 1.27679 1.73945 1.39242 1.23106 0.84807 1.00418 0.94393 1.23031 0.96403 1.03314 0.95756 1.22874 0.98371 0.99860 0.94909 0.87492 1.20071 0.78328 0.87461 0.83824 1.90649 1.49894 1.19471 1.83611 1.48199 1.57153 1.14210 1.12234 1.22446 1.02586 0.92632 0.83404 1.21888 0.85920 0.89202 0.97027 0.86420 1.22717 0.99482 0.96277 0.99018 1.22538 0.96884 0.97732 0.98910 1.22142 0.92567 0.95157 0.87757 0.90388 1.22813 0.98887 0.82185 0.99448 1.45182 1.38190 1.16728 1.30395 1.19002 1.10549 0.93646 1.12450 0.90554 1.24838 0.99454 0.95054 1.00568 1.69833 1.47397 0.98098 1.40547 0.86126 0.80200 0.77162 0.82258 1.21551 1.20665 1.21717 0.90447 0.91938 0.92130 0.92371 0.89717 0.90099 0.89448 0.91348 0.90224 0.92749 0.92878 0.93128 0.92556 0.91557 0.91588 0.93432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.66 37.16 0.36 -1.37 16 2 C 0.09 1.28 3.02 -25.68 -0.08 1.21 16 3 H 0.08 1.24 7.53 -51.93 -0.39 0.85 16 4 O -0.38 -5.06 11.22 -35.23 -0.40 -5.46 16 5 C 0.05 0.54 7.70 37.73 0.29 0.83 16 6 C -0.15 -1.71 5.23 -25.20 -0.13 -1.85 16 7 C -0.14 -1.88 1.98 -89.77 -0.18 -2.06 16 8 H 0.11 1.33 7.64 -51.93 -0.40 0.94 16 9 C 0.52 9.00 6.99 -10.99 -0.08 8.92 16 10 O -0.56 -11.36 15.15 5.55 0.08 -11.28 16 11 N -0.59 -10.72 2.28 -170.98 -0.39 -11.11 16 12 C 0.11 2.41 5.83 -3.22 -0.02 2.39 16 13 C 0.17 3.70 3.09 -65.67 -0.20 3.50 16 14 H 0.12 2.99 6.35 -51.92 -0.33 2.66 16 15 C -0.14 -2.57 6.23 -24.96 -0.16 -2.72 16 16 C -0.12 -2.04 6.24 -24.95 -0.16 -2.20 16 17 C 0.13 2.43 4.32 -65.20 -0.28 2.15 16 18 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 19 C 0.09 1.52 5.02 -2.75 -0.01 1.50 16 20 N -0.58 -13.37 2.79 -152.09 -0.42 -13.79 16 21 C -0.23 -5.81 10.37 -15.06 -0.16 -5.97 16 22 H 0.08 1.89 7.85 -52.49 -0.41 1.48 16 23 C 0.00 -0.05 5.42 -17.43 -0.09 -0.14 16 24 N -0.91 -24.69 10.35 55.49 0.57 -24.12 16 25 Si 0.91 20.87 29.56 -169.99 -5.03 15.84 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 H 0.08 1.01 8.03 -51.93 -0.42 0.59 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.03 7.85 -51.93 -0.41 0.63 16 35 H 0.09 0.87 7.00 -51.93 -0.36 0.51 16 36 H 0.07 1.50 7.11 -51.92 -0.37 1.13 16 37 H 0.08 1.96 7.78 -51.93 -0.40 1.56 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 0.99 7.86 -51.92 -0.41 0.58 16 40 H 0.05 0.77 7.87 -51.93 -0.41 0.36 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 0.88 4.84 -51.93 -0.25 0.62 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 334.93 15.07 5.05 5.05 Total: -1.00 -28.57 334.93 -8.50 -37.07 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -7.08 Total: 3.60 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -0.89 Total: 4.20 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.24 Total: -49.02 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.31 Total: -16.73 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.57 -8.50 -37.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029527075.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.372 kcal (2) G-P(sol) polarization free energy of solvation -28.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds