Wall clock time and date at job start Tue Mar 31 2020 07:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.67217 * 2 1 4 4 O 1.44386 * 110.61653 * 237.04216 * 2 1 3 5 5 C 1.43744 * 106.97237 * 201.43843 * 4 2 1 6 6 C 1.54100 * 107.29524 * 26.50743 * 5 4 2 7 7 C 1.54808 * 104.18901 * 357.97541 * 6 5 4 8 8 H 1.08997 * 110.90863 * 97.34472 * 7 6 5 9 9 C 1.50695 * 110.90757 * 220.91783 * 7 6 5 10 10 O 1.21289 * 120.00039 * 118.54615 * 9 7 6 11 11 N 1.34774 * 120.00326 * 298.54498 * 9 7 6 12 12 C 1.47162 * 120.71627 * 179.97438 * 11 9 7 13 13 C 1.53881 * 108.03240 * 132.73475 * 12 11 9 14 14 H 1.09010 * 112.09625 * 181.91485 * 13 12 11 15 15 C 1.54542 * 108.37271 * 306.25310 * 13 12 11 16 16 C 1.54827 * 104.74404 * 89.16980 * 15 13 12 17 17 C 1.54550 * 104.74433 * 0.02562 * 16 15 13 18 18 H 1.08999 * 112.68166 * 146.80338 * 17 16 15 19 19 C 1.47162 * 120.70564 * 359.97438 * 11 9 7 20 20 N 1.48306 * 107.20904 * 58.36392 * 13 12 11 21 21 C 1.36940 * 128.07917 * 106.09414 * 20 13 12 22 22 H 1.07998 * 119.99888 * 165.13522 * 21 20 13 23 23 C 1.38813 * 119.99801 * 345.13927 * 21 20 13 24 24 N 1.31623 * 120.00158 * 350.71996 * 23 21 20 25 25 Si 1.86800 * 119.99833 * 170.72098 * 23 21 20 26 26 H 1.48499 * 109.47174 * 269.99593 * 25 23 21 27 27 H 1.48504 * 109.47195 * 30.00057 * 25 23 21 28 28 H 1.48497 * 109.46989 * 149.99545 * 25 23 21 29 29 H 1.08996 * 109.46867 * 297.03084 * 1 2 3 30 30 H 1.08999 * 109.47593 * 57.03308 * 1 2 3 31 31 H 1.09002 * 109.46777 * 177.03490 * 1 2 3 32 32 H 1.09008 * 109.87401 * 267.08692 * 5 4 2 33 33 H 1.09000 * 110.00385 * 146.00965 * 5 4 2 34 34 H 1.08999 * 110.48940 * 239.29428 * 6 5 4 35 35 H 1.09006 * 110.48244 * 116.64949 * 6 5 4 36 36 H 1.09008 * 109.74654 * 13.10395 * 12 11 9 37 37 H 1.08999 * 109.79524 * 252.39815 * 12 11 9 38 38 H 1.09004 * 110.36967 * 208.14001 * 15 13 12 39 39 H 1.09008 * 110.36410 * 330.45615 * 15 13 12 40 40 H 1.08996 * 110.31050 * 241.25204 * 16 15 13 41 41 H 1.09005 * 110.61026 * 118.91357 * 16 15 13 42 42 H 1.08998 * 109.75646 * 346.89919 * 19 11 9 43 43 H 1.09001 * 109.75279 * 107.58258 * 19 11 9 44 44 H 0.96990 * 119.99795 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 8 2.0384 -0.7352 -1.1339 5 6 3.3840 -1.1253 -0.8120 6 6 3.4796 -1.2167 0.7233 7 6 2.0759 -0.7894 1.2170 8 1 1.4553 -1.6607 1.4262 9 6 2.1797 0.0977 2.4308 10 8 1.7552 1.2332 2.3901 11 7 2.7442 -0.3705 3.5615 12 6 2.8542 0.4824 4.7557 13 6 2.3693 -0.3313 5.9684 14 1 2.3915 0.2521 6.8890 15 6 0.9568 -0.8753 5.6566 16 6 1.2032 -2.2411 4.9703 17 6 2.7410 -2.3913 4.9340 18 1 3.0646 -3.4273 5.0346 19 6 3.2639 -1.7457 3.6282 20 7 3.2199 -1.5432 6.0523 21 6 4.2186 -1.8137 6.9494 22 1 4.5948 -2.8209 7.0511 23 6 4.7472 -0.7933 7.7280 24 7 4.4236 0.4583 7.4807 25 14 5.9178 -1.1966 9.1267 26 1 5.1425 -1.4106 10.3750 27 1 6.6763 -2.4301 8.7974 28 1 6.8654 -0.0696 9.3196 29 1 -0.3633 0.4670 0.9154 30 1 -0.3634 0.5592 -0.8622 31 1 -0.3633 -1.0263 -0.0532 32 1 4.0854 -0.3780 -1.1832 33 1 3.6071 -2.0956 -1.2557 34 1 4.2407 -0.5332 1.0995 35 1 3.6976 -2.2392 1.0318 36 1 2.2315 1.3687 4.6339 37 1 3.8926 0.7794 4.9028 38 1 0.3892 -1.0075 6.5778 39 1 0.4315 -0.2013 4.9799 40 1 0.7985 -2.2345 3.9583 41 1 0.7572 -3.0485 5.5512 42 1 2.9090 -2.3158 2.7697 43 1 4.3537 -1.7279 3.6333 44 1 4.7933 1.1713 8.0245 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029527075.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:49 Heat of formation + Delta-G solvation = -62.204442 kcal Electronic energy + Delta-G solvation = -25802.644974 eV Core-core repulsion = 22334.054237 eV Total energy + Delta-G solvation = -3468.590737 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.90940 -40.37523 -38.92463 -35.53923 -34.24494 -33.53820 -32.47944 -31.92315 -31.02530 -28.31112 -27.09779 -25.53327 -25.39215 -23.14732 -22.73170 -21.25531 -21.09813 -20.14057 -18.83299 -17.91652 -17.32392 -17.02215 -16.63667 -16.52022 -16.20688 -15.59458 -15.54382 -15.07316 -14.83342 -14.62623 -14.43661 -14.12542 -13.63918 -13.52879 -13.36992 -13.26361 -13.06771 -12.91218 -12.78408 -12.69649 -12.56085 -12.27304 -12.04919 -11.97105 -11.84393 -11.65586 -11.50184 -11.44923 -11.14298 -10.85810 -10.67729 -10.54605 -9.72475 -8.69834 -7.84630 -5.20155 1.48934 1.50380 1.57845 1.63403 2.06947 2.51297 2.80667 3.35288 3.43817 3.51104 3.63317 3.65943 3.99362 4.07601 4.14554 4.17592 4.20684 4.26202 4.32680 4.40121 4.42801 4.61201 4.63038 4.70720 4.74312 4.85946 4.87481 4.94132 4.99733 5.01679 5.06555 5.09395 5.10796 5.16552 5.25798 5.30240 5.41082 5.54704 5.58330 5.83989 5.89263 6.23434 6.60723 7.06417 7.20578 7.74102 8.52482 9.26872 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.004649 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.021937 B = 6021.678761 C = 6231.215381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.094 3.906 3 H 0.057 0.943 4 O -0.385 6.385 5 C 0.047 3.953 6 C -0.144 4.144 7 C -0.131 4.131 8 H 0.133 0.867 9 C 0.516 3.484 10 O -0.591 6.591 11 N -0.589 5.589 12 C 0.130 3.870 13 C 0.165 3.835 14 H 0.076 0.924 15 C -0.128 4.128 16 C -0.110 4.110 17 C 0.125 3.875 18 H 0.097 0.903 19 C 0.098 3.902 20 N -0.604 5.604 21 C -0.229 4.229 22 H 0.084 0.916 23 C -0.057 4.057 24 N -0.940 5.940 25 Si 0.969 3.031 26 H -0.292 1.292 27 H -0.268 1.268 28 H -0.302 1.302 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.114 0.886 34 H 0.064 0.936 35 H 0.114 0.886 36 H 0.054 0.946 37 H 0.038 0.962 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.052 0.948 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.100 -7.741 -13.766 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.036 3.964 3 H 0.075 0.925 4 O -0.305 6.305 5 C -0.030 4.030 6 C -0.182 4.182 7 C -0.152 4.152 8 H 0.151 0.849 9 C 0.305 3.695 10 O -0.473 6.473 11 N -0.319 5.319 12 C 0.005 3.995 13 C 0.057 3.943 14 H 0.094 0.906 15 C -0.167 4.167 16 C -0.149 4.149 17 C 0.018 3.982 18 H 0.115 0.885 19 C -0.026 4.026 20 N -0.326 5.326 21 C -0.358 4.358 22 H 0.101 0.899 23 C -0.251 4.251 24 N -0.588 5.588 25 Si 0.799 3.201 26 H -0.219 1.219 27 H -0.193 1.193 28 H -0.229 1.229 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.132 0.868 34 H 0.083 0.917 35 H 0.133 0.867 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.131 0.869 43 H 0.071 0.929 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.231 -7.137 -13.780 16.376 hybrid contribution 1.143 0.765 1.467 2.011 sum -4.088 -6.371 -12.313 14.454 Atomic orbital electron populations 1.21708 0.91693 1.03526 1.02631 1.22837 0.96373 0.94336 0.82881 0.92513 1.88857 1.28838 1.73749 1.39056 1.23292 0.83781 1.01996 0.93893 1.23068 0.94502 1.04350 0.96261 1.22886 1.00224 0.99613 0.92516 0.84891 1.20774 0.76928 0.87480 0.84318 1.90639 1.51105 1.21375 1.84152 1.48176 1.57596 1.14650 1.11500 1.21901 0.99575 0.92824 0.85179 1.21694 0.88106 0.89086 0.95418 0.90618 1.22595 0.96990 0.97735 0.99412 1.22488 0.95689 0.96316 1.00396 1.22459 0.93498 0.95437 0.86774 0.88529 1.22837 0.98187 0.81219 1.00332 1.45357 1.37913 1.17517 1.31788 1.19336 1.10283 0.93734 1.12419 0.89860 1.25522 1.01522 0.95102 1.02923 1.70037 1.48756 0.98677 1.41324 0.85212 0.78358 0.76811 0.79693 1.21902 1.19286 1.22943 0.91719 0.91266 0.90385 0.92221 0.86841 0.91745 0.86723 0.92802 0.94316 0.92800 0.92759 0.90413 0.91094 0.86939 0.92916 0.94526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.66 71.98 0.70 -2.37 16 2 C 0.09 2.37 3.02 31.28 0.09 2.46 16 3 H 0.06 1.71 7.53 -2.39 -0.02 1.69 16 4 O -0.39 -9.14 11.22 -148.98 -1.67 -10.81 16 5 C 0.05 0.86 7.70 72.35 0.56 1.41 16 6 C -0.14 -2.85 5.23 31.58 0.17 -2.68 16 7 C -0.13 -3.15 1.98 -10.24 -0.02 -3.17 16 8 H 0.13 2.58 7.64 -2.39 -0.02 2.56 16 9 C 0.52 17.36 6.99 87.66 0.61 17.97 16 10 O -0.59 -24.35 15.15 -3.06 -0.05 -24.40 16 11 N -0.59 -20.98 2.28 -813.26 -1.86 -22.83 16 12 C 0.13 5.80 5.83 86.55 0.50 6.31 16 13 C 0.16 7.48 3.09 45.47 0.14 7.62 16 14 H 0.08 4.08 6.35 -2.38 -0.02 4.06 16 15 C -0.13 -4.72 6.23 31.74 0.20 -4.52 16 16 C -0.11 -3.31 6.24 31.75 0.20 -3.11 16 17 C 0.13 4.24 4.32 45.78 0.20 4.44 16 18 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 19 C 0.10 2.96 5.02 86.86 0.44 3.40 16 20 N -0.60 -27.47 2.79 -635.11 -1.77 -29.24 16 21 C -0.23 -11.64 10.37 84.03 0.87 -10.76 16 22 H 0.08 4.03 7.85 -2.91 -0.02 4.01 16 23 C -0.06 -3.01 5.42 84.86 0.46 -2.55 16 24 N -0.94 -53.33 10.35 21.65 0.22 -53.11 16 25 Si 0.97 43.69 29.56 68.60 2.03 45.72 16 26 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 28 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 29 H 0.06 1.60 8.03 -2.39 -0.02 1.58 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.11 1.47 8.14 -2.39 -0.02 1.46 16 34 H 0.06 1.51 7.85 -2.39 -0.02 1.50 16 35 H 0.11 1.66 7.00 -2.38 -0.02 1.64 16 36 H 0.05 2.51 7.11 -2.38 -0.02 2.49 16 37 H 0.04 2.03 7.78 -2.39 -0.02 2.01 16 38 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.05 1.97 7.86 -2.38 -0.02 1.95 16 40 H 0.08 1.95 7.87 -2.39 -0.02 1.93 16 41 H 0.07 1.96 8.14 -2.38 -0.02 1.95 16 42 H 0.11 2.37 4.84 -2.39 -0.01 2.35 16 43 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.25 13.84 8.31 -92.72 -0.77 13.07 16 Total: -1.00 -64.96 334.93 3.00 -61.96 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.98 Total: 18.28 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 5.11 Total: 14.44 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -3.41 Total: -105.19 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -1.72 Total: -35.21 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -64.96 3.00 -61.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029527075.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.240 kcal (2) G-P(sol) polarization free energy of solvation -64.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds