Wall clock time and date at job start Tue Mar 31 2020 07:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.52268 * 2 1 4 4 C 1.53188 * 109.50101 * 239.91775 * 2 1 3 5 5 N 1.46930 * 108.77737 * 185.41304 * 4 2 1 6 6 C 1.34776 * 120.62995 * 233.63062 * 5 4 2 7 7 O 1.21740 * 119.99981 * 354.86642 * 6 5 4 8 8 C 1.41796 * 119.99788 * 174.86526 * 6 5 4 9 9 C 1.33455 * 118.78751 * 80.83398 * 8 6 5 10 10 O 1.34355 * 123.07805 * 180.39146 * 9 8 6 11 11 C 1.45356 * 117.48038 * 343.69523 * 10 9 8 12 12 C 1.53478 * 108.26559 * 47.47685 * 11 10 9 13 13 C 1.50425 * 118.78482 * 260.56717 * 8 6 5 14 14 C 1.46926 * 118.73754 * 53.60752 * 5 4 2 15 15 C 1.53194 * 108.77603 * 306.39240 * 14 5 4 16 16 C 1.53041 * 109.31305 * 54.63548 * 15 14 5 17 17 H 1.09003 * 109.46214 * 58.63983 * 16 15 14 18 18 N 1.46498 * 109.46137 * 178.61455 * 16 15 14 19 19 C 1.36938 * 120.00004 * 274.99952 * 18 16 15 20 20 H 1.08001 * 120.00130 * 0.02562 * 19 18 16 21 21 C 1.38810 * 119.99986 * 179.97438 * 19 18 16 22 22 N 1.31621 * 119.99991 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99975 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47076 * 180.02562 * 23 21 19 25 25 H 1.48502 * 109.47005 * 300.00139 * 23 21 19 26 26 H 1.48500 * 109.46960 * 59.99978 * 23 21 19 27 27 H 1.08995 * 109.47552 * 299.91707 * 1 2 3 28 28 H 1.08998 * 109.47163 * 59.92636 * 1 2 3 29 29 H 1.09005 * 109.47051 * 179.91524 * 1 2 3 30 30 H 1.09002 * 109.58584 * 65.62498 * 4 2 1 31 31 H 1.09000 * 109.58630 * 305.20014 * 4 2 1 32 32 H 1.07995 * 118.45859 * 0.41201 * 9 8 6 33 33 H 1.08998 * 109.70311 * 167.17506 * 11 10 9 34 34 H 1.09003 * 109.70570 * 287.74172 * 11 10 9 35 35 H 1.09005 * 109.70750 * 56.98786 * 12 11 10 36 36 H 1.09002 * 109.70355 * 177.56416 * 12 11 10 37 37 H 1.08997 * 109.45054 * 282.35737 * 13 8 6 38 38 H 1.08998 * 109.45208 * 42.30238 * 13 8 6 39 39 H 1.08993 * 109.58568 * 186.60524 * 14 5 4 40 40 H 1.09001 * 109.58787 * 66.17626 * 14 5 4 41 41 H 1.09003 * 109.49924 * 294.68599 * 15 14 5 42 42 H 1.08999 * 109.49820 * 174.58486 * 15 14 5 43 43 H 0.96998 * 120.00498 * 94.99626 * 18 16 15 44 44 H 0.96999 * 120.00052 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0414 -0.7238 -1.2495 5 7 3.5047 -0.8291 -1.1695 6 6 4.2812 -0.3856 -2.1778 7 8 3.7709 0.0217 -3.2053 8 6 5.6926 -0.3933 -2.0418 9 6 6.3521 -1.5347 -2.2498 10 8 7.6866 -1.6416 -2.1370 11 6 8.4601 -0.4109 -2.1330 12 6 7.7995 0.5692 -1.1539 13 6 6.3919 0.8869 -1.6744 14 6 4.1053 -1.4266 0.0309 15 6 3.5708 -0.6949 1.2661 16 6 2.0408 -0.7230 1.2484 17 1 1.6967 -1.7572 1.2351 18 7 1.5264 -0.0529 2.4453 19 6 1.3950 -0.7495 3.6169 20 1 1.6709 -1.7928 3.6587 21 6 0.9081 -0.1144 4.7511 22 7 0.5723 1.1573 4.7003 23 14 0.7295 -1.0645 6.3496 24 1 0.1918 -0.1656 7.4022 25 1 -0.2030 -2.2024 6.1474 26 1 2.0570 -1.5808 6.7694 27 1 -0.3634 0.5125 0.8907 28 1 -0.3633 0.5150 -0.8893 29 1 -0.3633 -1.0277 -0.0015 30 1 1.7638 -0.1579 -2.1388 31 1 1.6053 -1.7216 -1.2979 32 1 5.7865 -2.4136 -2.5218 33 1 9.4807 -0.6193 -1.8119 34 1 8.4707 0.0199 -3.1342 35 1 7.7364 0.1146 -0.1652 36 1 8.3862 1.4863 -1.0999 37 1 6.4620 1.5274 -2.5535 38 1 5.8260 1.3992 -0.8963 39 1 5.1896 -1.3245 -0.0136 40 1 3.8376 -2.4817 0.0870 41 1 3.9158 0.3390 1.2542 42 1 3.9334 -1.1895 2.1672 43 1 1.2790 0.8843 2.4080 44 1 0.2318 1.6010 5.4928 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035934648.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:10 Heat of formation + Delta-G solvation = -52.058756 kcal Electronic energy + Delta-G solvation = -24662.343705 eV Core-core repulsion = 21194.192918 eV Total energy + Delta-G solvation = -3468.150787 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.83517 -39.45861 -37.61152 -34.61146 -34.22051 -32.91958 -31.71401 -31.42743 -29.27428 -26.70667 -25.78022 -25.15583 -24.08646 -22.71310 -21.64922 -20.74234 -19.46356 -18.57577 -17.47861 -17.06425 -16.90994 -16.29486 -15.59435 -14.98918 -14.72783 -14.52869 -14.15112 -14.01906 -13.74945 -13.47909 -13.37800 -13.30174 -13.08055 -12.69272 -12.40507 -12.25829 -11.71437 -11.63464 -11.48351 -11.17141 -11.16022 -10.92538 -10.87584 -10.80199 -10.60143 -10.39163 -10.23402 -9.77855 -9.70524 -9.61133 -8.91467 -8.52375 -8.42320 -6.96950 -5.78219 -3.06853 1.68596 2.61276 3.04395 3.35269 3.42032 3.46948 3.47726 4.39645 4.46816 4.56919 4.66077 4.90334 4.94612 5.03342 5.15087 5.19527 5.27618 5.34238 5.38397 5.41623 5.54167 5.61816 5.66697 5.70318 5.81261 5.83797 5.96781 5.99871 6.05863 6.10119 6.17535 6.32958 6.41471 6.44751 6.55815 6.66782 6.82596 6.93753 7.06113 7.06628 7.57232 7.67411 8.27739 8.40122 9.51441 10.09144 10.44087 11.44252 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019659 B = 0.003975 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.911732 B = 7042.190385 C = 7853.218030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.068 0.932 4 C 0.119 3.881 5 N -0.601 5.601 6 C 0.572 3.428 7 O -0.551 6.551 8 C -0.280 4.280 9 C 0.101 3.899 10 O -0.315 6.315 11 C 0.055 3.945 12 C -0.156 4.156 13 C -0.061 4.061 14 C 0.108 3.892 15 C -0.150 4.150 16 C 0.184 3.816 17 H 0.047 0.953 18 N -0.721 5.721 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.933 5.933 23 Si 0.905 3.095 24 H -0.292 1.292 25 H -0.286 1.286 26 H -0.287 1.287 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.162 0.838 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.362 -3.661 -13.680 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.086 0.914 4 C -0.004 4.004 5 N -0.333 5.333 6 C 0.361 3.639 7 O -0.430 6.430 8 C -0.284 4.284 9 C 0.035 3.965 10 O -0.227 6.227 11 C -0.019 4.019 12 C -0.194 4.194 13 C -0.098 4.098 14 C -0.016 4.016 15 C -0.191 4.191 16 C 0.073 3.927 17 H 0.065 0.935 18 N -0.361 5.361 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.581 5.581 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.213 1.213 26 H -0.213 1.213 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.179 0.821 33 H 0.124 0.876 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.218 0.782 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.187 -3.736 -14.034 19.617 hybrid contribution -0.258 0.085 1.103 1.136 sum 12.929 -3.651 -12.931 18.646 Atomic orbital electron populations 1.21657 0.94134 1.01754 1.01821 1.21735 0.96549 0.99985 0.94659 0.91354 1.21710 0.78649 1.00791 0.99242 1.48288 1.07083 1.59774 1.18137 1.16807 0.86809 0.77245 0.83011 1.90803 1.75868 1.47906 1.28436 1.20041 0.94751 0.97960 1.15646 1.22391 0.83009 0.97285 0.93786 1.86228 1.16183 1.33578 1.86677 1.23485 0.94684 0.83697 1.00018 1.22228 0.96731 1.00498 0.99930 1.20160 0.94448 0.93680 1.01550 1.21858 0.98124 0.97002 0.84589 1.22664 1.00250 1.00336 0.95857 1.20199 0.90405 0.95662 0.86393 0.93457 1.42401 1.76529 1.11374 1.05782 1.19176 1.35992 0.94064 0.87749 0.91304 1.24717 1.02065 0.95993 0.98008 1.69648 1.49978 1.09472 1.28999 0.86305 0.77735 0.78732 0.83623 1.21754 1.21304 1.21336 0.90765 0.93843 0.93057 0.89474 0.91638 0.82070 0.87559 0.91130 0.90048 0.89539 0.90515 0.90068 0.90241 0.91640 0.92307 0.90695 0.78239 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.03 37.16 0.34 -1.90 16 2 C -0.11 -1.82 2.46 -90.50 -0.22 -2.04 16 3 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.12 1.77 5.70 -3.71 -0.02 1.75 16 5 N -0.60 -8.70 2.97 -176.12 -0.52 -9.22 16 6 C 0.57 8.66 6.65 -14.90 -0.10 8.56 16 7 O -0.55 -10.20 16.52 5.15 0.09 -10.12 16 8 C -0.28 -3.43 3.74 -105.07 -0.39 -3.82 16 9 C 0.10 1.08 9.74 29.06 0.28 1.37 16 10 O -0.31 -3.15 10.48 -14.90 -0.16 -3.31 16 11 C 0.06 0.41 7.15 37.41 0.27 0.68 16 12 C -0.16 -1.24 6.24 -26.28 -0.16 -1.40 16 13 C -0.06 -0.65 5.90 -27.81 -0.16 -0.81 16 14 C 0.11 1.44 6.21 -3.71 -0.02 1.42 16 15 C -0.15 -2.51 5.66 -26.61 -0.15 -2.66 16 16 C 0.18 3.47 2.19 -67.89 -0.15 3.32 16 17 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 18 N -0.72 -17.23 4.41 -53.38 -0.24 -17.47 16 19 C -0.24 -6.36 9.93 -15.06 -0.15 -6.51 16 20 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -27.58 13.06 55.49 0.72 -26.85 16 23 Si 0.90 21.93 29.55 -169.99 -5.02 16.91 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H 0.07 1.42 7.36 -51.93 -0.38 1.04 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 1.36 7.03 -51.93 -0.37 0.99 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.16 1.53 7.98 -52.49 -0.42 1.11 16 33 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 0.96 5.87 -51.93 -0.30 0.66 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.38 9.92 7.51 -40.82 -0.31 9.61 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 350.23 15.07 5.28 5.28 Total: -1.00 -31.50 350.23 -7.84 -39.33 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.24 Total: 7.92 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -0.75 Total: -2.47 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.03 Total: -53.54 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.07 Total: -13.43 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.50 -7.84 -39.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035934648.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.725 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds