Wall clock time and date at job start Tue Mar 31 2020 07:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.52268 * 2 1 4 4 C 1.53188 * 109.50101 * 239.91775 * 2 1 3 5 5 N 1.46930 * 108.77737 * 185.41304 * 4 2 1 6 6 C 1.34776 * 120.62995 * 233.63062 * 5 4 2 7 7 O 1.21740 * 119.99981 * 354.86642 * 6 5 4 8 8 C 1.41796 * 119.99788 * 174.86526 * 6 5 4 9 9 C 1.33455 * 118.78751 * 80.83398 * 8 6 5 10 10 O 1.34355 * 123.07805 * 180.39146 * 9 8 6 11 11 C 1.45356 * 117.48038 * 343.69523 * 10 9 8 12 12 C 1.53478 * 108.26559 * 47.47685 * 11 10 9 13 13 C 1.50425 * 118.78482 * 260.56717 * 8 6 5 14 14 C 1.46926 * 118.73754 * 53.60752 * 5 4 2 15 15 C 1.53194 * 108.77603 * 306.39240 * 14 5 4 16 16 C 1.53041 * 109.31305 * 54.63548 * 15 14 5 17 17 H 1.09003 * 109.46214 * 58.63983 * 16 15 14 18 18 N 1.46498 * 109.46137 * 178.61455 * 16 15 14 19 19 C 1.36938 * 120.00004 * 274.99952 * 18 16 15 20 20 H 1.08001 * 120.00130 * 0.02562 * 19 18 16 21 21 C 1.38810 * 119.99986 * 179.97438 * 19 18 16 22 22 N 1.31621 * 119.99991 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99975 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47076 * 180.02562 * 23 21 19 25 25 H 1.48502 * 109.47005 * 300.00139 * 23 21 19 26 26 H 1.48500 * 109.46960 * 59.99978 * 23 21 19 27 27 H 1.08995 * 109.47552 * 299.91707 * 1 2 3 28 28 H 1.08998 * 109.47163 * 59.92636 * 1 2 3 29 29 H 1.09005 * 109.47051 * 179.91524 * 1 2 3 30 30 H 1.09002 * 109.58584 * 65.62498 * 4 2 1 31 31 H 1.09000 * 109.58630 * 305.20014 * 4 2 1 32 32 H 1.07995 * 118.45859 * 0.41201 * 9 8 6 33 33 H 1.08998 * 109.70311 * 167.17506 * 11 10 9 34 34 H 1.09003 * 109.70570 * 287.74172 * 11 10 9 35 35 H 1.09005 * 109.70750 * 56.98786 * 12 11 10 36 36 H 1.09002 * 109.70355 * 177.56416 * 12 11 10 37 37 H 1.08997 * 109.45054 * 282.35737 * 13 8 6 38 38 H 1.08998 * 109.45208 * 42.30238 * 13 8 6 39 39 H 1.08993 * 109.58568 * 186.60524 * 14 5 4 40 40 H 1.09001 * 109.58787 * 66.17626 * 14 5 4 41 41 H 1.09003 * 109.49924 * 294.68599 * 15 14 5 42 42 H 1.08999 * 109.49820 * 174.58486 * 15 14 5 43 43 H 0.96998 * 120.00498 * 94.99626 * 18 16 15 44 44 H 0.96999 * 120.00052 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0414 -0.7238 -1.2495 5 7 3.5047 -0.8291 -1.1695 6 6 4.2812 -0.3856 -2.1778 7 8 3.7709 0.0217 -3.2053 8 6 5.6926 -0.3933 -2.0418 9 6 6.3521 -1.5347 -2.2498 10 8 7.6866 -1.6416 -2.1370 11 6 8.4601 -0.4109 -2.1330 12 6 7.7995 0.5692 -1.1539 13 6 6.3919 0.8869 -1.6744 14 6 4.1053 -1.4266 0.0309 15 6 3.5708 -0.6949 1.2661 16 6 2.0408 -0.7230 1.2484 17 1 1.6967 -1.7572 1.2351 18 7 1.5264 -0.0529 2.4453 19 6 1.3950 -0.7495 3.6169 20 1 1.6709 -1.7928 3.6587 21 6 0.9081 -0.1144 4.7511 22 7 0.5723 1.1573 4.7003 23 14 0.7295 -1.0645 6.3496 24 1 0.1918 -0.1656 7.4022 25 1 -0.2030 -2.2024 6.1474 26 1 2.0570 -1.5808 6.7694 27 1 -0.3634 0.5125 0.8907 28 1 -0.3633 0.5150 -0.8893 29 1 -0.3633 -1.0277 -0.0015 30 1 1.7638 -0.1579 -2.1388 31 1 1.6053 -1.7216 -1.2979 32 1 5.7865 -2.4136 -2.5218 33 1 9.4807 -0.6193 -1.8119 34 1 8.4707 0.0199 -3.1342 35 1 7.7364 0.1146 -0.1652 36 1 8.3862 1.4863 -1.0999 37 1 6.4620 1.5274 -2.5535 38 1 5.8260 1.3992 -0.8963 39 1 5.1896 -1.3245 -0.0136 40 1 3.8376 -2.4817 0.0870 41 1 3.9158 0.3390 1.2542 42 1 3.9334 -1.1895 2.1672 43 1 1.2790 0.8843 2.4080 44 1 0.2318 1.6010 5.4928 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035934648.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:10 Heat of formation + Delta-G solvation = -71.849602 kcal Electronic energy + Delta-G solvation = -24663.201901 eV Core-core repulsion = 21194.192918 eV Total energy + Delta-G solvation = -3469.008983 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.85933 -40.44743 -38.98633 -36.15458 -35.17908 -34.35043 -33.08638 -32.55522 -30.97801 -27.85793 -26.91039 -26.43802 -25.26106 -24.11097 -23.07905 -21.84232 -20.80876 -19.46988 -19.03918 -18.51548 -17.79453 -17.36949 -16.76497 -16.48445 -15.79957 -15.77166 -15.49660 -15.40714 -14.97387 -14.91174 -14.50015 -14.30513 -14.09501 -13.89101 -13.70088 -13.59195 -13.15472 -12.94442 -12.81185 -12.74741 -12.48501 -12.31854 -12.18938 -12.03659 -11.84855 -11.79529 -11.66470 -11.60026 -11.15952 -10.95076 -10.81042 -9.67910 -9.39972 -8.95287 -7.90039 -5.17796 0.81796 1.46112 1.49566 1.51575 1.57470 2.11190 2.43403 2.59088 3.43085 3.59563 3.76554 3.79429 3.81379 3.96920 4.00151 4.10004 4.15965 4.27386 4.32496 4.34534 4.38736 4.51789 4.57358 4.67667 4.74860 4.78442 4.80480 4.82810 4.91271 4.97973 5.02332 5.13686 5.17776 5.22321 5.23559 5.33533 5.40560 5.51189 5.56713 5.64241 6.26333 6.31108 6.42289 7.10256 7.37767 8.13666 8.37200 9.33386 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019659 B = 0.003975 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.911732 B = 7042.190385 C = 7853.218030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.099 4.099 3 H 0.050 0.950 4 C 0.125 3.875 5 N -0.601 5.601 6 C 0.575 3.425 7 O -0.590 6.590 8 C -0.308 4.308 9 C 0.124 3.876 10 O -0.319 6.319 11 C 0.051 3.949 12 C -0.149 4.149 13 C -0.061 4.061 14 C 0.119 3.881 15 C -0.140 4.140 16 C 0.180 3.820 17 H 0.049 0.951 18 N -0.732 5.732 19 C -0.233 4.233 20 H 0.078 0.922 21 C -0.075 4.075 22 N -0.971 5.971 23 Si 0.968 3.032 24 H -0.300 1.300 25 H -0.279 1.279 26 H -0.278 1.278 27 H 0.040 0.960 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.175 0.825 33 H 0.134 0.866 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.043 0.957 42 H 0.066 0.934 43 H 0.370 0.630 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.238 -5.575 -14.393 21.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.119 4.119 3 H 0.069 0.931 4 C 0.002 3.998 5 N -0.332 5.332 6 C 0.366 3.634 7 O -0.472 6.472 8 C -0.312 4.312 9 C 0.057 3.943 10 O -0.231 6.231 11 C -0.022 4.022 12 C -0.187 4.187 13 C -0.099 4.099 14 C -0.004 4.004 15 C -0.180 4.180 16 C 0.071 3.929 17 H 0.067 0.933 18 N -0.371 5.371 19 C -0.364 4.364 20 H 0.095 0.905 21 C -0.267 4.267 22 N -0.622 5.622 23 Si 0.797 3.203 24 H -0.227 1.227 25 H -0.205 1.205 26 H -0.204 1.204 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.191 0.809 33 H 0.152 0.848 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.116 0.884 40 H 0.104 0.896 41 H 0.061 0.939 42 H 0.084 0.916 43 H 0.202 0.798 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 15.105 -5.697 -14.768 21.879 hybrid contribution -0.791 0.665 1.241 1.615 sum 14.313 -5.032 -13.526 20.326 Atomic orbital electron populations 1.21573 0.93898 1.02082 1.01183 1.21598 0.96703 0.98969 0.94637 0.93131 1.21609 0.79226 1.01364 0.97603 1.48353 1.06885 1.59589 1.18364 1.17203 0.87887 0.76012 0.82282 1.90779 1.76825 1.49577 1.29996 1.19956 0.93267 0.99356 1.18628 1.22550 0.83484 0.96958 0.91269 1.86237 1.15714 1.35149 1.86004 1.23773 0.95425 0.82612 1.00439 1.22209 0.95182 1.01670 0.99603 1.20159 0.95869 0.92922 1.00924 1.21828 0.99008 0.97260 0.82300 1.22451 0.98314 0.99903 0.97379 1.20423 0.91691 0.95335 0.85443 0.93309 1.42581 1.76918 1.10818 1.06738 1.19570 1.33922 0.94424 0.88520 0.90452 1.25475 1.03093 0.96869 1.01245 1.69815 1.51986 1.11121 1.29325 0.85292 0.77909 0.77359 0.79690 1.22704 1.20526 1.20398 0.94053 0.91772 0.92196 0.90008 0.89751 0.80868 0.84780 0.90376 0.90450 0.87459 0.90923 0.91819 0.88374 0.89570 0.93858 0.91555 0.79828 0.94281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 9.03 71.98 0.65 -3.59 16 2 C -0.10 -3.29 2.46 -10.72 -0.03 -3.31 16 3 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 4 C 0.12 3.57 5.70 86.36 0.49 4.07 16 5 N -0.60 -16.55 2.97 -829.32 -2.46 -19.01 16 6 C 0.58 16.86 6.65 85.12 0.57 17.43 16 7 O -0.59 -21.67 16.52 -4.48 -0.07 -21.75 16 8 C -0.31 -7.08 3.74 -20.15 -0.08 -7.16 16 9 C 0.12 2.34 9.74 66.74 0.65 2.99 16 10 O -0.32 -5.39 10.48 -76.23 -0.80 -6.19 16 11 C 0.05 0.59 7.15 72.14 0.52 1.10 16 12 C -0.15 -2.00 6.24 30.89 0.19 -1.81 16 13 C -0.06 -1.24 5.90 29.90 0.18 -1.06 16 14 C 0.12 2.93 6.21 86.36 0.54 3.47 16 15 C -0.14 -4.56 5.66 30.67 0.17 -4.39 16 16 C 0.18 6.71 2.19 45.02 0.10 6.81 16 17 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 18 N -0.73 -35.54 4.41 -322.81 -1.42 -36.96 16 19 C -0.23 -12.42 9.93 84.03 0.83 -11.58 16 20 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 21 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 22 N -0.97 -58.91 13.06 21.65 0.28 -58.62 16 23 Si 0.97 45.32 29.55 68.60 2.03 47.34 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 27 H 0.04 1.62 7.36 -2.39 -0.02 1.60 16 28 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.08 2.49 7.03 -2.39 -0.02 2.47 16 31 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.17 2.77 7.98 -2.91 -0.02 2.75 16 33 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 1.12 8.14 -2.38 -0.02 1.11 16 36 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.10 2.12 5.87 -2.39 -0.01 2.11 16 40 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.37 19.84 7.51 -92.71 -0.70 19.14 16 44 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -68.80 350.23 3.09 -65.71 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.29 Total: 30.25 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 5.25 Total: -0.77 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -3.60 Total: -114.60 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.87 Total: -27.94 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -68.80 3.09 -65.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035934648.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.136 kcal (2) G-P(sol) polarization free energy of solvation -68.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds