Wall clock time and date at job start Tue Mar 31 2020 07:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.52457 * 2 1 4 4 C 1.52763 * 109.56492 * 240.04455 * 2 1 3 5 5 N 1.46919 * 109.01037 * 185.55291 * 4 2 1 6 6 C 1.34777 * 120.63258 * 233.58746 * 5 4 2 7 7 O 1.21740 * 119.99955 * 4.92740 * 6 5 4 8 8 C 1.41794 * 120.00514 * 184.93052 * 6 5 4 9 9 C 1.33428 * 118.76970 * 75.16575 * 8 6 5 10 10 O 1.34351 * 123.07369 * 180.43446 * 9 8 6 11 11 C 1.45350 * 117.48014 * 343.65261 * 10 9 8 12 12 C 1.53486 * 108.26384 * 47.48341 * 11 10 9 13 13 C 1.50418 * 118.78818 * 255.15413 * 8 6 5 14 14 C 1.46928 * 118.74090 * 53.31097 * 5 4 2 15 15 C 1.53197 * 108.77105 * 306.64586 * 14 5 4 16 16 C 1.53035 * 109.31329 * 54.63526 * 15 14 5 17 17 H 1.09003 * 109.45564 * 178.63158 * 16 15 14 18 18 N 1.46494 * 109.46532 * 58.65371 * 16 15 14 19 19 C 1.36941 * 119.99913 * 84.99980 * 18 16 15 20 20 H 1.08001 * 119.99936 * 359.97438 * 19 18 16 21 21 C 1.38813 * 119.99917 * 180.02562 * 19 18 16 22 22 N 1.31614 * 120.00177 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00006 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47038 * 90.00303 * 23 21 19 25 25 H 1.48497 * 109.47258 * 210.00260 * 23 21 19 26 26 H 1.48500 * 109.47331 * 330.00489 * 23 21 19 27 27 H 1.09000 * 109.47114 * 299.91846 * 1 2 3 28 28 H 1.08999 * 109.47290 * 59.91779 * 1 2 3 29 29 H 1.08997 * 109.47600 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.50582 * 65.66762 * 4 2 1 31 31 H 1.09001 * 109.43054 * 305.39232 * 4 2 1 32 32 H 1.08003 * 118.46447 * 0.43777 * 9 8 6 33 33 H 1.08993 * 109.71020 * 287.78557 * 11 10 9 34 34 H 1.09001 * 109.74036 * 167.19025 * 11 10 9 35 35 H 1.09001 * 109.70404 * 177.60910 * 12 11 10 36 36 H 1.08994 * 109.74117 * 57.00290 * 12 11 10 37 37 H 1.09004 * 109.45223 * 42.29639 * 13 8 6 38 38 H 1.09000 * 109.45583 * 282.33967 * 13 8 6 39 39 H 1.08999 * 109.58549 * 66.43057 * 14 5 4 40 40 H 1.09002 * 109.58771 * 186.85668 * 14 5 4 41 41 H 1.09005 * 109.49382 * 174.58549 * 15 14 5 42 42 H 1.09002 * 109.49322 * 294.64668 * 15 14 5 43 43 H 0.97002 * 119.99962 * 265.00523 * 18 16 15 44 44 H 0.97002 * 120.00396 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0415 -0.7187 -1.2471 5 7 3.5045 -0.8292 -1.1696 6 6 4.2810 -0.3856 -2.1779 7 8 3.7787 0.1928 -3.1240 8 6 5.6832 -0.5927 -2.1369 9 6 6.1598 -1.8131 -2.3893 10 8 7.4704 -2.1078 -2.3656 11 6 8.4082 -0.9983 -2.4127 12 6 7.9584 0.0555 -1.3915 13 6 6.5781 0.5715 -1.8107 14 6 4.1052 -1.4268 0.0307 15 6 3.5707 -0.6950 1.2660 16 6 2.0408 -0.7232 1.2483 17 1 1.6582 -0.2243 2.1388 18 7 1.5782 -2.1131 1.2308 19 6 1.4467 -2.8058 2.4047 20 1 1.6844 -2.3275 3.3435 21 6 1.0089 -4.1229 2.3881 22 7 0.8830 -4.7889 3.5163 23 14 0.5986 -4.9503 0.7644 24 1 1.8147 -5.6086 0.2230 25 1 -0.4603 -5.9685 0.9814 26 1 0.1153 -3.9317 -0.2021 27 1 -0.3633 0.5126 0.8907 28 1 -0.3634 0.5151 -0.8892 29 1 -0.3634 -1.0276 -0.0005 30 1 1.7645 -0.1497 -2.1346 31 1 1.6020 -1.7149 -1.2975 32 1 5.4592 -2.6010 -2.6237 33 1 8.4130 -0.5632 -3.4120 34 1 9.4084 -1.3508 -2.1607 35 1 8.6704 0.8807 -1.3770 36 1 7.8972 -0.3946 -0.4007 37 1 6.1421 1.1468 -0.9939 38 1 6.6800 1.2084 -2.6894 39 1 3.8375 -2.4819 0.0867 40 1 5.1896 -1.3247 -0.0138 41 1 3.9334 -1.1897 2.1671 42 1 3.9164 0.3387 1.2543 43 1 1.3652 -2.5427 0.3876 44 1 0.5767 -5.7092 3.5047 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035934651.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:16 Heat of formation + Delta-G solvation = -45.534420 kcal Electronic energy + Delta-G solvation = -25173.841322 eV Core-core repulsion = 21705.973451 eV Total energy + Delta-G solvation = -3467.867871 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.82717 -39.51732 -37.79671 -34.47669 -34.14099 -32.96198 -31.70083 -31.49547 -29.73488 -26.73545 -25.86997 -25.25016 -23.96434 -23.11817 -21.67298 -20.84319 -18.92335 -18.29661 -17.90631 -17.25790 -16.90008 -16.24397 -15.57544 -14.95466 -14.76151 -14.52798 -14.32067 -14.08868 -13.74541 -13.56440 -13.41702 -13.28858 -13.08717 -12.76336 -12.57660 -12.31430 -11.75885 -11.61995 -11.57841 -11.34864 -11.15707 -11.01656 -10.93102 -10.86559 -10.58698 -10.49535 -10.22684 -9.85901 -9.68875 -9.56356 -8.97108 -8.50089 -8.32353 -7.29285 -5.80154 -3.15236 1.70657 2.68317 3.08536 3.32849 3.35652 3.40436 3.42697 4.40138 4.47257 4.55216 4.66939 4.91283 4.97234 5.03243 5.14151 5.18835 5.20946 5.28786 5.36654 5.38222 5.53211 5.57678 5.62594 5.66672 5.78782 5.82397 5.90330 5.93792 6.00165 6.07273 6.09288 6.23633 6.31878 6.38466 6.50915 6.59492 6.67997 6.76067 6.91466 7.10382 7.64154 7.96464 8.32551 8.39040 9.17372 9.90049 10.10096 11.38333 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017328 B = 0.005046 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.482904 B = 5547.903942 C = 6147.029451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 H 0.070 0.930 4 C 0.116 3.884 5 N -0.600 5.600 6 C 0.572 3.428 7 O -0.554 6.554 8 C -0.285 4.285 9 C 0.107 3.893 10 O -0.313 6.313 11 C 0.055 3.945 12 C -0.157 4.157 13 C -0.058 4.058 14 C 0.115 3.885 15 C -0.148 4.148 16 C 0.185 3.815 17 H 0.059 0.941 18 N -0.743 5.743 19 C -0.240 4.240 20 H 0.090 0.910 21 C 0.007 3.993 22 N -0.933 5.933 23 Si 0.877 3.123 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.278 1.278 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.163 0.837 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.360 0.640 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.846 10.307 -10.562 19.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 H 0.089 0.911 4 C -0.007 4.007 5 N -0.332 5.332 6 C 0.361 3.639 7 O -0.433 6.433 8 C -0.289 4.289 9 C 0.042 3.958 10 O -0.225 6.225 11 C -0.019 4.019 12 C -0.194 4.194 13 C -0.095 4.095 14 C -0.008 4.008 15 C -0.189 4.189 16 C 0.075 3.925 17 H 0.077 0.923 18 N -0.387 5.387 19 C -0.370 4.370 20 H 0.108 0.892 21 C -0.189 4.189 22 N -0.581 5.581 23 Si 0.708 3.292 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.180 0.820 33 H 0.089 0.911 34 H 0.125 0.875 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.070 0.930 43 H 0.194 0.806 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.666 10.329 -10.792 19.585 hybrid contribution -0.412 -0.583 -0.959 1.196 sum 12.253 9.746 -11.752 19.576 Atomic orbital electron populations 1.21676 0.94223 1.02812 1.00884 1.21663 0.96498 0.99315 0.95638 0.91127 1.21552 0.79087 1.00964 0.99062 1.48291 1.06902 1.59690 1.18298 1.16797 0.86551 0.78370 0.82186 1.90789 1.75797 1.42387 1.34372 1.19987 0.95172 0.97335 1.16426 1.22450 0.84384 0.95827 0.93184 1.86247 1.13988 1.35224 1.87021 1.23476 0.91966 0.86822 0.99661 1.22200 0.97580 0.99590 1.00055 1.20094 0.92795 0.94788 1.01869 1.21715 0.97177 0.98289 0.83585 1.22484 0.99865 0.98938 0.97618 1.20182 0.91003 0.86134 0.95198 0.92262 1.42834 1.80581 1.09457 1.05830 1.19058 1.37528 0.94076 0.86327 0.89178 1.24623 1.01553 0.96702 0.95979 1.69685 1.53168 1.10840 1.24424 0.86675 0.78187 0.79578 0.84790 1.21135 1.21731 1.20413 0.92352 0.93553 0.91653 0.89511 0.91612 0.81995 0.91149 0.87535 0.89613 0.90106 0.90331 0.90619 0.90473 0.90615 0.90273 0.93043 0.80611 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.05 37.15 0.34 -1.77 16 2 C -0.11 -1.74 2.66 -90.72 -0.24 -1.98 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 4 C 0.12 1.88 5.40 -3.94 -0.02 1.85 16 5 N -0.60 -9.37 2.98 -176.38 -0.53 -9.90 16 6 C 0.57 9.06 6.65 -14.90 -0.10 8.96 16 7 O -0.55 -10.53 16.50 5.15 0.09 -10.44 16 8 C -0.28 -3.67 3.65 -105.08 -0.38 -4.05 16 9 C 0.11 1.29 9.92 29.05 0.29 1.58 16 10 O -0.31 -3.47 10.48 -14.89 -0.16 -3.62 16 11 C 0.06 0.43 7.15 37.41 0.27 0.70 16 12 C -0.16 -1.21 6.23 -26.37 -0.16 -1.38 16 13 C -0.06 -0.60 5.89 -27.91 -0.16 -0.76 16 14 C 0.11 1.75 5.86 -3.71 -0.02 1.73 16 15 C -0.15 -2.36 5.78 -26.61 -0.15 -2.52 16 16 C 0.18 3.31 2.53 -67.89 -0.17 3.13 16 17 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 18 N -0.74 -16.16 3.44 -53.39 -0.18 -16.35 16 19 C -0.24 -6.35 10.41 -15.06 -0.16 -6.50 16 20 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 21 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 22 N -0.93 -28.49 13.97 55.49 0.78 -27.71 16 23 Si 0.88 21.52 27.73 -169.99 -4.71 16.80 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 26 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 1.13 7.54 -51.93 -0.39 0.74 16 30 H 0.09 1.42 6.99 -51.93 -0.36 1.05 16 31 H 0.07 1.13 6.64 -51.93 -0.34 0.79 16 32 H 0.16 1.88 7.98 -52.48 -0.42 1.46 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.08 1.34 7.74 -51.93 -0.40 0.94 16 40 H 0.08 1.02 6.13 -51.93 -0.32 0.71 16 41 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.36 7.88 3.80 -40.82 -0.16 7.73 16 44 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 343.35 15.07 5.17 5.17 Total: -1.00 -31.78 343.35 -7.38 -39.16 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -7.05 Total: 7.79 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -0.78 Total: -0.90 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.07 Total: -53.96 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.07 Total: -14.07 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.71 Total: 16.80 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.78 -7.38 -39.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035934651.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.373 kcal (2) G-P(sol) polarization free energy of solvation -31.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds