Wall clock time and date at job start Tue Mar 31 2020 07:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.52457 * 2 1 4 4 C 1.52763 * 109.56492 * 240.04455 * 2 1 3 5 5 N 1.46919 * 109.01037 * 185.55291 * 4 2 1 6 6 C 1.34777 * 120.63258 * 233.58746 * 5 4 2 7 7 O 1.21740 * 119.99955 * 4.92740 * 6 5 4 8 8 C 1.41794 * 120.00514 * 184.93052 * 6 5 4 9 9 C 1.33428 * 118.76970 * 75.16575 * 8 6 5 10 10 O 1.34351 * 123.07369 * 180.43446 * 9 8 6 11 11 C 1.45350 * 117.48014 * 343.65261 * 10 9 8 12 12 C 1.53486 * 108.26384 * 47.48341 * 11 10 9 13 13 C 1.50418 * 118.78818 * 255.15413 * 8 6 5 14 14 C 1.46928 * 118.74090 * 53.31097 * 5 4 2 15 15 C 1.53197 * 108.77105 * 306.64586 * 14 5 4 16 16 C 1.53035 * 109.31329 * 54.63526 * 15 14 5 17 17 H 1.09003 * 109.45564 * 178.63158 * 16 15 14 18 18 N 1.46494 * 109.46532 * 58.65371 * 16 15 14 19 19 C 1.36941 * 119.99913 * 84.99980 * 18 16 15 20 20 H 1.08001 * 119.99936 * 359.97438 * 19 18 16 21 21 C 1.38813 * 119.99917 * 180.02562 * 19 18 16 22 22 N 1.31614 * 120.00177 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00006 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47038 * 90.00303 * 23 21 19 25 25 H 1.48497 * 109.47258 * 210.00260 * 23 21 19 26 26 H 1.48500 * 109.47331 * 330.00489 * 23 21 19 27 27 H 1.09000 * 109.47114 * 299.91846 * 1 2 3 28 28 H 1.08999 * 109.47290 * 59.91779 * 1 2 3 29 29 H 1.08997 * 109.47600 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.50582 * 65.66762 * 4 2 1 31 31 H 1.09001 * 109.43054 * 305.39232 * 4 2 1 32 32 H 1.08003 * 118.46447 * 0.43777 * 9 8 6 33 33 H 1.08993 * 109.71020 * 287.78557 * 11 10 9 34 34 H 1.09001 * 109.74036 * 167.19025 * 11 10 9 35 35 H 1.09001 * 109.70404 * 177.60910 * 12 11 10 36 36 H 1.08994 * 109.74117 * 57.00290 * 12 11 10 37 37 H 1.09004 * 109.45223 * 42.29639 * 13 8 6 38 38 H 1.09000 * 109.45583 * 282.33967 * 13 8 6 39 39 H 1.08999 * 109.58549 * 66.43057 * 14 5 4 40 40 H 1.09002 * 109.58771 * 186.85668 * 14 5 4 41 41 H 1.09005 * 109.49382 * 174.58549 * 15 14 5 42 42 H 1.09002 * 109.49322 * 294.64668 * 15 14 5 43 43 H 0.97002 * 119.99962 * 265.00523 * 18 16 15 44 44 H 0.97002 * 120.00396 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0415 -0.7187 -1.2471 5 7 3.5045 -0.8292 -1.1696 6 6 4.2810 -0.3856 -2.1779 7 8 3.7787 0.1928 -3.1240 8 6 5.6832 -0.5927 -2.1369 9 6 6.1598 -1.8131 -2.3893 10 8 7.4704 -2.1078 -2.3656 11 6 8.4082 -0.9983 -2.4127 12 6 7.9584 0.0555 -1.3915 13 6 6.5781 0.5715 -1.8107 14 6 4.1052 -1.4268 0.0307 15 6 3.5707 -0.6950 1.2660 16 6 2.0408 -0.7232 1.2483 17 1 1.6582 -0.2243 2.1388 18 7 1.5782 -2.1131 1.2308 19 6 1.4467 -2.8058 2.4047 20 1 1.6844 -2.3275 3.3435 21 6 1.0089 -4.1229 2.3881 22 7 0.8830 -4.7889 3.5163 23 14 0.5986 -4.9503 0.7644 24 1 1.8147 -5.6086 0.2230 25 1 -0.4603 -5.9685 0.9814 26 1 0.1153 -3.9317 -0.2021 27 1 -0.3633 0.5126 0.8907 28 1 -0.3634 0.5151 -0.8892 29 1 -0.3634 -1.0276 -0.0005 30 1 1.7645 -0.1497 -2.1346 31 1 1.6020 -1.7149 -1.2975 32 1 5.4592 -2.6010 -2.6237 33 1 8.4130 -0.5632 -3.4120 34 1 9.4084 -1.3508 -2.1607 35 1 8.6704 0.8807 -1.3770 36 1 7.8972 -0.3946 -0.4007 37 1 6.1421 1.1468 -0.9939 38 1 6.6800 1.2084 -2.6894 39 1 3.8375 -2.4819 0.0867 40 1 5.1896 -1.3247 -0.0138 41 1 3.9334 -1.1897 2.1671 42 1 3.9164 0.3387 1.2543 43 1 1.3652 -2.5427 0.3876 44 1 0.5767 -5.7092 3.5047 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035934651.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:15 Heat of formation + Delta-G solvation = -65.562369 kcal Electronic energy + Delta-G solvation = -25174.709799 eV Core-core repulsion = 21705.973451 eV Total energy + Delta-G solvation = -3468.736348 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.91866 -40.55416 -39.15896 -35.95429 -35.17498 -34.41615 -33.18810 -32.56945 -31.44463 -27.88344 -27.00123 -26.36270 -25.18837 -24.66908 -23.04884 -21.88548 -20.15886 -19.83373 -19.33903 -18.48741 -17.84033 -17.35993 -16.65278 -16.51636 -16.16147 -15.77956 -15.57382 -15.21684 -15.11952 -14.94526 -14.50819 -14.40956 -14.29396 -14.01969 -13.73707 -13.64227 -13.32902 -13.04072 -12.95889 -12.71822 -12.49927 -12.30020 -12.03887 -11.98741 -11.94858 -11.77566 -11.68690 -11.60577 -11.22165 -10.97405 -10.85379 -9.67454 -9.43159 -9.22969 -7.98061 -5.28904 0.75224 1.36762 1.37551 1.44983 1.49493 2.08308 2.41372 2.49278 3.34209 3.57806 3.60819 3.75859 3.79754 3.96020 3.97505 4.01876 4.14657 4.23156 4.28604 4.33632 4.36342 4.49674 4.57703 4.57893 4.68792 4.75351 4.78846 4.91425 4.94503 4.98694 5.10285 5.11970 5.16811 5.20520 5.22973 5.25576 5.31088 5.42333 5.61152 5.84370 6.25183 6.26325 6.41491 7.08478 7.12624 7.89279 8.07809 9.23848 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017328 B = 0.005046 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.482904 B = 5547.903942 C = 6147.029451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.100 4.100 3 H 0.088 0.912 4 C 0.117 3.883 5 N -0.599 5.599 6 C 0.576 3.424 7 O -0.588 6.588 8 C -0.303 4.303 9 C 0.118 3.882 10 O -0.323 6.323 11 C 0.047 3.953 12 C -0.149 4.149 13 C -0.058 4.058 14 C 0.123 3.877 15 C -0.141 4.141 16 C 0.177 3.823 17 H 0.050 0.950 18 N -0.741 5.741 19 C -0.212 4.212 20 H 0.062 0.938 21 C -0.058 4.058 22 N -0.984 5.984 23 Si 0.937 3.063 24 H -0.281 1.281 25 H -0.301 1.301 26 H -0.257 1.257 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.160 0.840 33 H 0.078 0.922 34 H 0.133 0.867 35 H 0.113 0.887 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.362 0.638 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.513 11.666 -12.169 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.120 4.120 3 H 0.106 0.894 4 C -0.006 4.006 5 N -0.330 5.330 6 C 0.367 3.633 7 O -0.470 6.470 8 C -0.307 4.307 9 C 0.052 3.948 10 O -0.235 6.235 11 C -0.026 4.026 12 C -0.186 4.186 13 C -0.095 4.095 14 C 0.001 3.999 15 C -0.181 4.181 16 C 0.069 3.931 17 H 0.068 0.932 18 N -0.385 5.385 19 C -0.344 4.344 20 H 0.080 0.920 21 C -0.249 4.249 22 N -0.635 5.635 23 Si 0.766 3.234 24 H -0.207 1.207 25 H -0.228 1.228 26 H -0.181 1.181 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.177 0.823 33 H 0.097 0.903 34 H 0.151 0.849 35 H 0.131 0.869 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.116 0.884 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.196 0.804 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.363 11.740 -12.425 22.327 hybrid contribution -0.865 -0.908 -0.439 1.329 sum 13.497 10.832 -12.864 21.564 Atomic orbital electron populations 1.21650 0.93783 1.01696 1.02190 1.21576 0.96817 0.99668 0.93958 0.89363 1.21501 0.79575 1.00339 0.99213 1.48321 1.06713 1.59521 1.18437 1.17195 0.87565 0.77275 0.81294 1.90769 1.76657 1.44061 1.35544 1.19992 0.93845 0.98662 1.18226 1.22437 0.85097 0.95399 0.91881 1.86242 1.13684 1.37005 1.86524 1.23819 0.92243 0.86195 1.00328 1.22191 0.96516 1.00337 0.99578 1.20148 0.93772 0.93837 1.01772 1.21614 0.98402 0.96806 0.83092 1.22355 0.97961 1.00429 0.97368 1.20408 0.92375 0.84089 0.96197 0.93164 1.42789 1.80677 1.10802 1.04269 1.19003 1.34660 0.93830 0.86871 0.92012 1.25275 1.02973 0.97686 0.98976 1.69850 1.55768 1.11071 1.26843 0.85683 0.77679 0.78666 0.81392 1.20729 1.22767 1.18150 0.92061 0.91313 0.93891 0.89428 0.92780 0.82260 0.90343 0.84905 0.86909 0.90449 0.90607 0.90690 0.92596 0.88446 0.91660 0.90537 0.80405 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.05 71.98 0.65 -3.23 16 2 C -0.10 -2.95 2.66 -10.86 -0.03 -2.98 16 3 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.12 3.59 5.40 86.22 0.47 4.05 16 5 N -0.60 -17.75 2.98 -830.15 -2.47 -20.22 16 6 C 0.58 17.38 6.65 85.12 0.57 17.94 16 7 O -0.59 -21.72 16.50 -4.48 -0.07 -21.80 16 8 C -0.30 -7.23 3.65 -20.16 -0.07 -7.30 16 9 C 0.12 2.64 9.92 66.73 0.66 3.30 16 10 O -0.32 -6.37 10.48 -76.20 -0.80 -7.17 16 11 C 0.05 0.58 7.15 72.15 0.52 1.10 16 12 C -0.15 -1.81 6.23 30.83 0.19 -1.62 16 13 C -0.06 -1.05 5.89 29.83 0.18 -0.88 16 14 C 0.12 3.57 5.86 86.36 0.51 4.08 16 15 C -0.14 -4.26 5.78 30.67 0.18 -4.09 16 16 C 0.18 6.16 2.53 45.02 0.11 6.27 16 17 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 18 N -0.74 -31.88 3.44 -322.82 -1.11 -32.99 16 19 C -0.21 -11.37 10.41 84.03 0.87 -10.50 16 20 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 21 C -0.06 -3.29 5.50 84.86 0.47 -2.83 16 22 N -0.98 -61.71 13.97 21.65 0.30 -61.41 16 23 Si 0.94 44.78 27.73 68.60 1.90 46.68 16 24 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 25 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 26 H -0.26 -11.19 6.52 99.48 0.65 -10.54 16 27 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.04 1.42 7.54 -2.39 -0.02 1.40 16 30 H 0.09 2.72 6.99 -2.39 -0.02 2.70 16 31 H 0.05 1.79 6.64 -2.39 -0.02 1.78 16 32 H 0.16 3.51 7.98 -2.91 -0.02 3.49 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.89 7.74 -2.39 -0.02 1.87 16 40 H 0.10 2.42 6.13 -2.39 -0.01 2.41 16 41 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 42 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.36 15.47 3.80 -92.71 -0.35 15.12 16 44 H 0.25 15.41 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -69.33 343.35 3.59 -65.74 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.58 Total: 27.84 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 5.27 Total: 3.32 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -3.28 Total: -114.62 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.87 Total: -28.96 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.90 Total: 46.68 kcal Total: -69.33 3.59 -65.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035934651.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.180 kcal (2) G-P(sol) polarization free energy of solvation -69.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds