Wall clock time and date at job start Tue Mar 31 2020 07:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.49703 * 2 1 4 4 C 1.53190 * 109.49471 * 239.93448 * 2 1 3 5 5 N 1.46922 * 108.77240 * 185.38121 * 4 2 1 6 6 C 1.34782 * 120.63131 * 233.58174 * 5 4 2 7 7 O 1.21278 * 119.99859 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99825 * 180.02562 * 6 5 4 9 9 H 1.08998 * 115.48695 * 325.33058 * 8 6 5 10 10 C 1.55602 * 117.11675 * 111.44489 * 8 6 5 11 11 H 1.09004 * 120.43777 * 355.76143 * 10 8 6 12 12 C 1.54477 * 118.08390 * 197.71200 * 10 8 6 13 13 O 1.44688 * 104.83958 * 321.75212 * 12 10 8 14 14 C 1.44428 * 105.13885 * 319.51776 * 13 12 10 15 15 C 1.53002 * 117.42891 * 180.02562 * 8 6 5 16 16 H 1.08994 * 119.80958 * 5.65605 * 15 8 6 17 17 C 1.46926 * 118.73971 * 53.86258 * 5 4 2 18 18 C 1.53625 * 108.54476 * 306.09160 * 17 5 4 19 19 C 1.53039 * 109.52040 * 120.08138 * 2 1 3 20 20 H 1.08997 * 109.46247 * 301.34614 * 19 2 1 21 21 N 1.46496 * 109.46241 * 61.31203 * 19 2 1 22 22 C 1.36940 * 120.00177 * 204.99807 * 21 19 2 23 23 H 1.07999 * 119.99798 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00190 * 180.02562 * 22 21 19 25 25 N 1.31621 * 119.99929 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00065 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47270 * 59.99848 * 26 24 22 28 28 H 1.48506 * 109.47321 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47557 * 299.99896 * 26 24 22 30 30 H 1.08994 * 109.47762 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.47124 * 300.06807 * 1 2 3 32 32 H 1.09001 * 109.47511 * 60.05980 * 1 2 3 33 33 H 1.08998 * 109.58473 * 65.59760 * 4 2 1 34 34 H 1.09001 * 109.70368 * 305.23762 * 4 2 1 35 35 H 1.08996 * 110.37125 * 80.58074 * 12 10 8 36 36 H 1.08999 * 110.37542 * 202.92062 * 12 10 8 37 37 H 1.09002 * 110.37130 * 281.60836 * 14 13 12 38 38 H 1.08999 * 110.37385 * 159.38239 * 14 13 12 39 39 H 1.09002 * 109.58496 * 65.92725 * 17 5 4 40 40 H 1.08998 * 109.58636 * 186.34770 * 17 5 4 41 41 H 1.08994 * 109.63302 * 294.87059 * 18 17 5 42 42 H 1.08990 * 109.45930 * 174.74084 * 18 17 5 43 43 H 0.97007 * 120.00095 * 24.99661 * 21 19 2 44 44 H 0.97002 * 119.99919 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0412 -0.7235 -1.2498 5 7 3.5046 -0.8281 -1.1702 6 6 4.2806 -0.3850 -2.1791 7 8 3.7722 0.1061 -3.1645 8 6 5.7801 -0.5000 -2.0827 9 1 6.1969 -0.3733 -1.0836 10 6 6.4780 -1.5031 -3.0460 11 1 5.8862 -2.1386 -3.7049 12 6 7.9161 -1.9549 -2.7083 13 8 8.5643 -0.7702 -2.1889 14 6 8.1038 0.3107 -3.0287 15 6 6.6043 0.0221 -3.2613 16 1 6.1080 0.5386 -4.0829 17 6 4.1056 -1.4307 0.0275 18 6 3.5715 -0.6942 1.2654 19 6 2.0414 -0.7230 1.2481 20 1 1.6588 -0.2246 2.1388 21 7 1.5795 -2.1131 1.2306 22 6 1.4499 -2.8065 2.4044 23 1 1.6886 -2.3285 3.3430 24 6 1.0128 -4.1239 2.3877 25 7 0.7224 -4.7065 1.2438 26 14 0.8368 -5.0698 3.9888 27 1 -0.1409 -4.3785 4.8673 28 1 0.3566 -6.4453 3.7009 29 1 2.1539 -5.1376 4.6712 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5149 0.8894 32 1 -0.3634 0.5129 -0.8905 33 1 1.7632 -0.1576 -2.1389 34 1 1.6057 -1.7214 -1.3007 35 1 7.8996 -2.7402 -1.9527 36 1 8.4255 -2.3026 -3.6071 37 1 8.6420 0.3105 -3.9766 38 1 8.2315 1.2667 -2.5209 39 1 3.8349 -2.4852 0.0811 40 1 5.1901 -1.3316 -0.0187 41 1 3.9160 0.3397 1.2535 42 1 3.9345 -1.1883 2.1665 43 1 1.3655 -2.5425 0.3875 44 1 0.4166 -5.6269 1.2322 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036150843.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:18 Heat of formation + Delta-G solvation = -32.293667 kcal Electronic energy + Delta-G solvation = -24749.941671 eV Core-core repulsion = 21282.647963 eV Total energy + Delta-G solvation = -3467.293709 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.83928 -39.48176 -37.62246 -34.40133 -34.24876 -32.79468 -31.38863 -29.16822 -28.92341 -27.45624 -25.78098 -24.73462 -23.48511 -21.87624 -21.60476 -20.81376 -19.18523 -18.30494 -17.43880 -17.24276 -16.21477 -16.02524 -15.44145 -15.24925 -14.93658 -14.57197 -14.25031 -13.99822 -13.74385 -13.30083 -13.04380 -12.95455 -12.79423 -12.53025 -12.19511 -11.91665 -11.77889 -11.54598 -11.37452 -11.19845 -10.90437 -10.80181 -10.51093 -10.48268 -10.41725 -10.37136 -10.22864 -9.86885 -9.83267 -9.57239 -9.52758 -8.93605 -8.23296 -6.99120 -5.80318 -3.08793 2.47949 3.08021 3.41099 3.46468 3.46962 3.50085 3.73241 4.34415 4.45465 4.56399 4.59708 4.67915 4.91065 5.14598 5.17006 5.24127 5.32456 5.36358 5.37621 5.45945 5.51798 5.55101 5.59318 5.71316 5.73619 5.81319 5.87988 5.93903 6.05611 6.09958 6.24164 6.31759 6.41169 6.46850 6.49386 6.62686 6.68838 6.75876 6.92644 6.99735 7.66935 7.70056 8.36373 8.38212 9.49796 10.06423 10.41613 11.42024 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018234 B = 0.004233 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.232803 B = 6613.209607 C = 7486.483136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.065 0.935 4 C 0.119 3.881 5 N -0.593 5.593 6 C 0.543 3.457 7 O -0.555 6.555 8 C -0.141 4.141 9 H 0.128 0.872 10 C -0.173 4.173 11 H 0.130 0.870 12 C 0.072 3.928 13 O -0.374 6.374 14 C 0.071 3.929 15 C -0.167 4.167 16 H 0.133 0.867 17 C 0.113 3.887 18 C -0.150 4.150 19 C 0.178 3.822 20 H 0.051 0.949 21 N -0.718 5.718 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.933 5.933 26 Si 0.905 3.095 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.043 0.957 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.074 0.926 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.637 9.004 -7.621 16.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.083 0.917 4 C -0.003 4.003 5 N -0.324 5.324 6 C 0.331 3.669 7 O -0.434 6.434 8 C -0.162 4.162 9 H 0.146 0.854 10 C -0.192 4.192 11 H 0.148 0.852 12 C -0.005 4.005 13 O -0.293 6.293 14 C -0.006 4.006 15 C -0.186 4.186 16 H 0.151 0.849 17 C -0.009 4.009 18 C -0.192 4.192 19 C 0.068 3.932 20 H 0.069 0.931 21 N -0.361 5.361 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.489 9.182 -7.777 16.637 hybrid contribution -0.370 -0.832 0.587 1.083 sum 11.120 8.350 -7.190 15.655 Atomic orbital electron populations 1.21667 0.94208 1.03195 1.00433 1.21699 0.96507 0.98831 0.95752 0.91650 1.21664 0.78426 1.01601 0.98623 1.48029 1.07057 1.59039 1.18279 1.19382 0.87205 0.77729 0.82591 1.90647 1.75146 1.46055 1.31557 1.22509 0.91754 1.04397 0.97517 0.85381 1.24419 0.98159 0.93477 1.03155 0.85219 1.23029 0.88541 0.88996 0.99938 1.89230 1.68518 1.17143 1.54363 1.22971 0.90403 0.91745 0.95467 1.24025 0.96098 0.97460 1.01024 0.84870 1.21882 0.96631 0.98902 0.83523 1.22610 1.00447 0.98608 0.97493 1.20216 0.90807 0.87365 0.94820 0.93124 1.42467 1.79009 1.07674 1.06932 1.19179 1.37340 0.93873 0.86571 0.91307 1.24694 1.02239 0.97156 0.96586 1.69640 1.51646 1.13101 1.23721 0.86314 0.77757 0.79215 0.83136 1.21376 1.21806 1.21352 0.91026 0.92784 0.93789 0.89865 0.90591 0.88226 0.90801 0.90946 0.88551 0.89594 0.90920 0.93293 0.90716 0.78112 0.93487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.06 37.16 0.34 -1.87 16 2 C -0.11 -1.78 2.67 -90.50 -0.24 -2.02 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 4 C 0.12 2.03 5.41 -3.71 -0.02 2.01 16 5 N -0.59 -9.69 2.97 -172.51 -0.51 -10.20 16 6 C 0.54 8.77 7.48 -10.98 -0.08 8.68 16 7 O -0.55 -10.42 15.76 5.56 0.09 -10.33 16 8 C -0.14 -1.82 4.60 -90.39 -0.42 -2.24 16 9 H 0.13 1.59 6.54 -51.93 -0.34 1.25 16 10 C -0.17 -1.93 7.07 -87.64 -0.62 -2.55 16 11 H 0.13 1.45 8.14 -51.93 -0.42 1.03 16 12 C 0.07 0.68 7.55 37.93 0.29 0.97 16 13 O -0.37 -4.19 11.36 -35.23 -0.40 -4.59 16 14 C 0.07 0.66 7.52 37.93 0.29 0.94 16 15 C -0.17 -1.86 6.59 -89.03 -0.59 -2.45 16 16 H 0.13 1.55 7.82 -51.93 -0.41 1.14 16 17 C 0.11 1.80 6.11 -3.49 -0.02 1.78 16 18 C -0.15 -2.48 5.80 -26.38 -0.15 -2.63 16 19 C 0.18 3.31 2.53 -67.89 -0.17 3.13 16 20 H 0.05 0.97 8.08 -51.93 -0.42 0.56 16 21 N -0.72 -16.38 3.64 -53.39 -0.19 -16.57 16 22 C -0.24 -6.17 9.93 -15.06 -0.15 -6.32 16 23 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -26.89 13.06 55.49 0.72 -26.16 16 26 Si 0.90 21.64 29.55 -169.99 -5.02 16.62 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 30 H 0.07 1.33 7.54 -51.93 -0.39 0.94 16 31 H 0.05 0.84 8.14 -51.92 -0.42 0.41 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.43 7.01 -51.93 -0.36 1.07 16 34 H 0.08 1.43 6.65 -51.93 -0.35 1.08 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 1.61 7.74 -51.93 -0.40 1.21 16 40 H 0.07 0.99 5.52 -51.93 -0.29 0.70 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.38 9.39 5.93 -40.82 -0.24 9.15 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 345.83 15.07 5.21 5.21 Total: -1.00 -29.89 345.83 -8.72 -38.62 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -6.97 Total: 10.36 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -1.65 Total: -2.94 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.02 Total: -52.93 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.31 Total: -14.93 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.89 -8.72 -38.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036150843.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.321 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds