Wall clock time and date at job start Tue Mar 31 2020 07:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49908 * 2 1 4 4 C 1.53189 * 109.52116 * 120.08107 * 2 1 3 5 5 N 1.46925 * 108.77432 * 174.60387 * 4 2 1 6 6 C 1.34777 * 120.63519 * 126.37206 * 5 4 2 7 7 O 1.21289 * 119.99459 * 0.02562 * 6 5 4 8 8 C 1.50693 * 120.00575 * 180.02562 * 6 5 4 9 9 H 1.08996 * 115.51213 * 325.37212 * 8 6 5 10 10 C 1.53003 * 117.43183 * 110.64971 * 8 6 5 11 11 H 1.08995 * 119.80856 * 355.36634 * 10 8 6 12 12 C 1.56584 * 116.77730 * 197.58830 * 10 8 6 13 13 O 1.44434 * 104.82475 * 273.06717 * 12 10 8 14 14 C 1.44430 * 105.27159 * 40.92705 * 13 12 10 15 15 C 1.52998 * 117.43365 * 179.97438 * 8 6 5 16 16 H 1.08999 * 119.81147 * 4.64124 * 15 8 6 17 17 C 1.46931 * 118.74018 * 306.39092 * 5 4 2 18 18 C 1.53187 * 108.77274 * 53.60848 * 17 5 4 19 19 C 1.53039 * 109.49634 * 239.93530 * 2 1 3 20 20 H 1.08993 * 109.46127 * 58.63642 * 19 2 1 21 21 N 1.46497 * 109.46109 * 298.66883 * 19 2 1 22 22 C 1.36937 * 120.00181 * 155.00154 * 21 19 2 23 23 H 1.08007 * 119.99496 * 0.02562 * 22 21 19 24 24 C 1.38805 * 120.00442 * 180.02562 * 22 21 19 25 25 N 1.31620 * 120.00142 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00198 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47137 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.46997 * 119.99634 * 26 24 22 29 29 H 1.48501 * 109.47391 * 239.99585 * 26 24 22 30 30 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46897 * 300.00381 * 1 2 3 32 32 H 1.09001 * 109.46854 * 59.99814 * 1 2 3 33 33 H 1.09005 * 109.59035 * 294.38822 * 4 2 1 34 34 H 1.08998 * 109.58991 * 54.81550 * 4 2 1 35 35 H 1.08995 * 110.00883 * 154.40823 * 12 10 8 36 36 H 1.08997 * 110.80637 * 32.13117 * 12 10 8 37 37 H 1.08997 * 110.36702 * 200.65397 * 14 13 12 38 38 H 1.08999 * 110.37284 * 78.31782 * 14 13 12 39 39 H 1.09002 * 109.58421 * 293.82132 * 17 5 4 40 40 H 1.08993 * 109.70684 * 173.46907 * 17 5 4 41 41 H 1.09006 * 109.49516 * 185.41853 * 18 17 5 42 42 H 1.08993 * 109.49868 * 65.31880 * 18 17 5 43 43 H 0.96997 * 120.00298 * 335.00911 * 21 19 2 44 44 H 0.96995 * 120.00259 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0419 -0.7237 1.2494 5 7 3.5052 -0.8283 1.1690 6 6 4.2819 -0.3846 2.1772 7 8 3.7739 0.1063 3.1631 8 6 5.7813 -0.4984 2.0796 9 1 6.1522 -1.3814 1.5593 10 6 6.5778 0.7983 1.9210 11 1 6.0524 1.7464 1.8069 12 6 8.0491 0.6635 1.4022 13 8 8.8406 0.4403 2.5896 14 6 8.0634 -0.4685 3.3996 15 6 6.6061 0.0243 3.2574 16 1 6.1021 0.3879 4.1529 17 6 4.1060 -1.4255 -0.0316 18 6 3.5709 -0.6939 -1.2665 19 6 2.0408 -0.7227 -1.2486 20 1 1.6578 -0.2242 -2.1389 21 7 1.5790 -2.1129 -1.2310 22 6 1.4488 -2.8061 -2.4048 23 1 1.6870 -2.3279 -3.3435 24 6 1.0108 -4.1231 -2.3883 25 7 0.7210 -4.7060 -1.2443 26 14 0.8339 -5.0688 -3.9895 27 1 1.2201 -4.1945 -5.1260 28 1 1.7175 -6.2620 -3.9598 29 1 -0.5769 -5.5016 -4.1556 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.7644 -0.1580 2.1389 34 1 1.6063 -1.7217 1.2979 35 1 8.3566 1.5855 0.9090 36 1 8.1430 -0.1808 0.7194 37 1 8.3821 -0.4160 4.4406 38 1 8.1580 -1.4873 3.0239 39 1 3.8387 -2.4808 -0.0875 40 1 5.1904 -1.3251 0.0113 41 1 3.9335 -1.1884 -2.1678 42 1 3.9155 0.3400 -1.2546 43 1 1.3654 -2.5424 -0.3880 44 1 0.4153 -5.6264 -1.2327 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036150845.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:24 Heat of formation + Delta-G solvation = -33.593825 kcal Electronic energy + Delta-G solvation = -24713.381195 eV Core-core repulsion = 21246.031108 eV Total energy + Delta-G solvation = -3467.350088 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.88331 -39.48864 -37.67396 -34.73914 -34.29678 -32.83094 -31.43729 -29.21351 -28.88515 -27.31540 -25.69512 -24.65740 -23.51141 -22.17506 -21.66461 -20.87180 -19.48320 -18.26421 -17.46187 -17.23258 -16.38137 -15.81709 -15.44842 -15.31470 -14.95534 -14.51327 -14.36674 -14.01032 -13.70327 -13.42122 -13.32290 -12.91585 -12.69158 -12.54284 -12.22357 -11.94930 -11.75545 -11.61473 -11.42324 -11.21479 -10.95542 -10.83142 -10.59278 -10.53609 -10.51435 -10.42626 -10.18905 -9.89913 -9.87581 -9.61784 -9.57943 -8.97330 -8.27621 -7.01824 -5.83111 -3.11742 2.44567 3.07196 3.38291 3.44693 3.46653 3.46675 3.75955 4.20010 4.37850 4.53850 4.58334 4.64404 4.84957 4.89515 5.09937 5.19507 5.26962 5.31766 5.40890 5.44336 5.47160 5.50182 5.55900 5.68959 5.77134 5.78280 5.89165 5.91518 6.02649 6.05627 6.20640 6.28122 6.37154 6.42276 6.46410 6.59008 6.65014 6.72526 6.89201 6.96410 7.65143 7.65689 8.31660 8.35336 9.47138 10.03578 10.38618 11.39319 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019948 B = 0.003999 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.332528 B = 7000.658725 C = 7657.992811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.065 0.935 4 C 0.119 3.881 5 N -0.594 5.594 6 C 0.542 3.458 7 O -0.552 6.552 8 C -0.147 4.147 9 H 0.125 0.875 10 C -0.164 4.164 11 H 0.129 0.871 12 C 0.074 3.926 13 O -0.372 6.372 14 C 0.074 3.926 15 C -0.164 4.164 16 H 0.133 0.867 17 C 0.113 3.887 18 C -0.149 4.149 19 C 0.178 3.822 20 H 0.051 0.949 21 N -0.719 5.719 22 C -0.238 4.238 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.292 1.292 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.049 0.951 43 H 0.384 0.616 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.288 10.081 5.401 16.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.083 0.917 4 C -0.003 4.003 5 N -0.324 5.324 6 C 0.329 3.671 7 O -0.431 6.431 8 C -0.168 4.168 9 H 0.143 0.857 10 C -0.183 4.183 11 H 0.147 0.853 12 C -0.003 4.003 13 O -0.291 6.291 14 C -0.003 4.003 15 C -0.182 4.182 16 H 0.151 0.849 17 C -0.009 4.009 18 C -0.190 4.190 19 C 0.068 3.932 20 H 0.069 0.931 21 N -0.361 5.361 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.207 4.207 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.219 0.781 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.209 10.352 5.781 16.316 hybrid contribution -0.492 -0.967 -0.832 1.367 sum 10.717 9.385 4.949 15.080 Atomic orbital electron populations 1.21668 0.94183 1.03220 1.00455 1.21700 0.96534 0.98799 0.95740 0.91686 1.21675 0.78361 1.01657 0.98642 1.48029 1.07096 1.59304 1.18013 1.19405 0.87213 0.77809 0.82640 1.90661 1.75105 1.45950 1.31385 1.22437 0.91866 0.99405 1.03114 0.85714 1.24595 0.97088 0.96092 1.00545 0.85315 1.23333 0.86799 1.02226 0.87947 1.89181 1.42626 1.65896 1.31415 1.22967 0.87276 0.93171 0.96882 1.24154 0.96774 1.03620 0.93692 0.84923 1.21768 0.96486 0.99000 0.83674 1.22517 1.00455 0.98643 0.97391 1.20218 0.90804 0.87373 0.94834 0.93102 1.42485 1.79007 1.07673 1.06960 1.19264 1.37171 0.93873 0.86588 0.91190 1.24700 1.02230 0.97187 0.96596 1.69656 1.51735 1.13003 1.23635 0.86173 0.77311 0.79972 0.83035 1.20628 1.21973 1.21964 0.91008 0.93767 0.92777 0.89821 0.90538 0.88223 0.91386 0.88137 0.91640 0.89684 0.91110 0.90704 0.93277 0.78111 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.06 37.16 0.34 -1.84 16 2 C -0.11 -1.73 2.67 -90.50 -0.24 -1.97 16 3 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.12 1.99 5.42 -3.71 -0.02 1.97 16 5 N -0.59 -9.39 2.97 -172.77 -0.51 -9.90 16 6 C 0.54 8.49 7.48 -10.99 -0.08 8.41 16 7 O -0.55 -10.26 15.75 5.55 0.09 -10.17 16 8 C -0.15 -1.78 4.47 -91.77 -0.41 -2.19 16 9 H 0.13 1.35 6.83 -51.93 -0.35 0.99 16 10 C -0.16 -1.74 7.09 -87.92 -0.62 -2.37 16 11 H 0.13 1.39 8.14 -51.93 -0.42 0.96 16 12 C 0.07 0.68 7.48 39.09 0.29 0.97 16 13 O -0.37 -4.09 11.65 -35.23 -0.41 -4.50 16 14 C 0.07 0.70 7.44 37.94 0.28 0.98 16 15 C -0.16 -1.82 6.60 -89.07 -0.59 -2.41 16 16 H 0.13 1.61 7.81 -51.93 -0.41 1.20 16 17 C 0.11 1.72 6.03 -3.71 -0.02 1.70 16 18 C -0.15 -2.35 5.78 -26.61 -0.15 -2.51 16 19 C 0.18 3.22 2.53 -67.89 -0.17 3.05 16 20 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 21 N -0.72 -16.13 3.64 -53.39 -0.19 -16.33 16 22 C -0.24 -6.08 9.93 -15.06 -0.15 -6.23 16 23 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -26.69 13.06 55.49 0.72 -25.96 16 26 Si 0.90 21.45 29.55 -169.99 -5.02 16.43 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 30 H 0.07 1.32 7.54 -51.93 -0.39 0.93 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.42 7.01 -51.93 -0.36 1.05 16 34 H 0.08 1.42 6.64 -51.93 -0.34 1.07 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 1.54 7.74 -51.93 -0.40 1.14 16 40 H 0.07 0.88 5.69 -51.93 -0.30 0.59 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.38 9.28 5.92 -40.82 -0.24 9.04 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 346.23 15.07 5.22 5.22 Total: -1.00 -29.79 346.23 -8.75 -38.54 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -6.99 Total: 9.51 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -1.65 Total: -2.83 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.02 Total: -52.19 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.32 Total: -14.67 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.79 -8.75 -38.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036150845.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.951 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds