Wall clock time and date at job start Tue Mar 31 2020 07:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.49908 * 2 1 4 4 C 1.53189 * 109.52116 * 120.08107 * 2 1 3 5 5 N 1.46925 * 108.77432 * 174.60387 * 4 2 1 6 6 C 1.34777 * 120.63519 * 126.37206 * 5 4 2 7 7 O 1.21289 * 119.99459 * 0.02562 * 6 5 4 8 8 C 1.50693 * 120.00575 * 180.02562 * 6 5 4 9 9 H 1.08996 * 115.51213 * 325.37212 * 8 6 5 10 10 C 1.53003 * 117.43183 * 110.64971 * 8 6 5 11 11 H 1.08995 * 119.80856 * 355.36634 * 10 8 6 12 12 C 1.56584 * 116.77730 * 197.58830 * 10 8 6 13 13 O 1.44434 * 104.82475 * 273.06717 * 12 10 8 14 14 C 1.44430 * 105.27159 * 40.92705 * 13 12 10 15 15 C 1.52998 * 117.43365 * 179.97438 * 8 6 5 16 16 H 1.08999 * 119.81147 * 4.64124 * 15 8 6 17 17 C 1.46931 * 118.74018 * 306.39092 * 5 4 2 18 18 C 1.53187 * 108.77274 * 53.60848 * 17 5 4 19 19 C 1.53039 * 109.49634 * 239.93530 * 2 1 3 20 20 H 1.08993 * 109.46127 * 58.63642 * 19 2 1 21 21 N 1.46497 * 109.46109 * 298.66883 * 19 2 1 22 22 C 1.36937 * 120.00181 * 155.00154 * 21 19 2 23 23 H 1.08007 * 119.99496 * 0.02562 * 22 21 19 24 24 C 1.38805 * 120.00442 * 180.02562 * 22 21 19 25 25 N 1.31620 * 120.00142 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00198 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47137 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.46997 * 119.99634 * 26 24 22 29 29 H 1.48501 * 109.47391 * 239.99585 * 26 24 22 30 30 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46897 * 300.00381 * 1 2 3 32 32 H 1.09001 * 109.46854 * 59.99814 * 1 2 3 33 33 H 1.09005 * 109.59035 * 294.38822 * 4 2 1 34 34 H 1.08998 * 109.58991 * 54.81550 * 4 2 1 35 35 H 1.08995 * 110.00883 * 154.40823 * 12 10 8 36 36 H 1.08997 * 110.80637 * 32.13117 * 12 10 8 37 37 H 1.08997 * 110.36702 * 200.65397 * 14 13 12 38 38 H 1.08999 * 110.37284 * 78.31782 * 14 13 12 39 39 H 1.09002 * 109.58421 * 293.82132 * 17 5 4 40 40 H 1.08993 * 109.70684 * 173.46907 * 17 5 4 41 41 H 1.09006 * 109.49516 * 185.41853 * 18 17 5 42 42 H 1.08993 * 109.49868 * 65.31880 * 18 17 5 43 43 H 0.96997 * 120.00298 * 335.00911 * 21 19 2 44 44 H 0.96995 * 120.00259 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0419 -0.7237 1.2494 5 7 3.5052 -0.8283 1.1690 6 6 4.2819 -0.3846 2.1772 7 8 3.7739 0.1063 3.1631 8 6 5.7813 -0.4984 2.0796 9 1 6.1522 -1.3814 1.5593 10 6 6.5778 0.7983 1.9210 11 1 6.0524 1.7464 1.8069 12 6 8.0491 0.6635 1.4022 13 8 8.8406 0.4403 2.5896 14 6 8.0634 -0.4685 3.3996 15 6 6.6061 0.0243 3.2574 16 1 6.1021 0.3879 4.1529 17 6 4.1060 -1.4255 -0.0316 18 6 3.5709 -0.6939 -1.2665 19 6 2.0408 -0.7227 -1.2486 20 1 1.6578 -0.2242 -2.1389 21 7 1.5790 -2.1129 -1.2310 22 6 1.4488 -2.8061 -2.4048 23 1 1.6870 -2.3279 -3.3435 24 6 1.0108 -4.1231 -2.3883 25 7 0.7210 -4.7060 -1.2443 26 14 0.8339 -5.0688 -3.9895 27 1 1.2201 -4.1945 -5.1260 28 1 1.7175 -6.2620 -3.9598 29 1 -0.5769 -5.5016 -4.1556 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.7644 -0.1580 2.1389 34 1 1.6063 -1.7217 1.2979 35 1 8.3566 1.5855 0.9090 36 1 8.1430 -0.1808 0.7194 37 1 8.3821 -0.4160 4.4406 38 1 8.1580 -1.4873 3.0239 39 1 3.8387 -2.4808 -0.0875 40 1 5.1904 -1.3251 0.0113 41 1 3.9335 -1.1884 -2.1678 42 1 3.9155 0.3400 -1.2546 43 1 1.3654 -2.5424 -0.3880 44 1 0.4153 -5.6264 -1.2327 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036150845.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:23 Heat of formation + Delta-G solvation = -51.706042 kcal Electronic energy + Delta-G solvation = -24714.166600 eV Core-core repulsion = 21246.031108 eV Total energy + Delta-G solvation = -3468.135492 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.90733 -40.60851 -39.00881 -35.87982 -35.64315 -34.41497 -32.98221 -30.91954 -29.60241 -28.48535 -27.01280 -25.93759 -25.23015 -23.17806 -22.97314 -21.68937 -20.69773 -19.62411 -19.22951 -18.46448 -17.47578 -16.77396 -16.71084 -16.29971 -16.08775 -15.99528 -15.83629 -15.52766 -14.97120 -14.85995 -14.52008 -14.28813 -13.90676 -13.59731 -13.51144 -12.99748 -12.95604 -12.89558 -12.83414 -12.66024 -12.52986 -12.39873 -12.05021 -11.97262 -11.91317 -11.58354 -11.43187 -11.31788 -11.16168 -10.94060 -10.77033 -10.65039 -9.63239 -8.91629 -7.88181 -5.14322 1.30568 1.49447 1.51351 1.59511 1.88321 2.50595 2.60468 3.02616 3.23380 3.46175 3.53252 3.67251 3.80150 3.83060 3.88369 4.00314 4.04712 4.09752 4.12122 4.33568 4.39375 4.41486 4.52183 4.63610 4.66038 4.72903 4.76590 4.82312 4.83946 4.96241 4.98383 5.02556 5.06371 5.13317 5.22324 5.29259 5.30662 5.47787 5.61145 5.63443 5.71515 6.33796 6.40698 7.06672 7.41445 8.17622 8.40912 9.35334 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019948 B = 0.003999 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.332528 B = 7000.658725 C = 7657.992811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 H 0.086 0.914 4 C 0.123 3.877 5 N -0.594 5.594 6 C 0.539 3.461 7 O -0.586 6.586 8 C -0.153 4.153 9 H 0.142 0.858 10 C -0.152 4.152 11 H 0.127 0.873 12 C 0.075 3.925 13 O -0.389 6.389 14 C 0.076 3.924 15 C -0.168 4.168 16 H 0.118 0.882 17 C 0.119 3.881 18 C -0.141 4.141 19 C 0.171 3.829 20 H 0.048 0.952 21 N -0.725 5.725 22 C -0.225 4.225 23 H 0.076 0.924 24 C -0.072 4.072 25 N -0.969 5.969 26 Si 0.962 3.038 27 H -0.266 1.266 28 H -0.298 1.298 29 H -0.302 1.302 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.106 0.894 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.373 0.627 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.289 11.603 4.478 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.117 4.117 3 H 0.104 0.896 4 C 0.000 4.000 5 N -0.325 5.325 6 C 0.328 3.672 7 O -0.467 6.467 8 C -0.174 4.174 9 H 0.159 0.841 10 C -0.171 4.171 11 H 0.145 0.855 12 C -0.001 4.001 13 O -0.308 6.308 14 C 0.000 4.000 15 C -0.187 4.187 16 H 0.136 0.864 17 C -0.003 4.003 18 C -0.181 4.181 19 C 0.062 3.938 20 H 0.066 0.934 21 N -0.366 5.366 22 C -0.357 4.357 23 H 0.094 0.906 24 C -0.264 4.264 25 N -0.621 5.621 26 Si 0.793 3.207 27 H -0.190 1.190 28 H -0.226 1.226 29 H -0.230 1.230 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.135 0.865 36 H 0.101 0.899 37 H 0.131 0.869 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.124 0.876 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.206 0.794 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 13.240 11.921 4.826 18.458 hybrid contribution -1.124 -1.336 -0.496 1.815 sum 12.116 10.585 4.330 16.661 Atomic orbital electron populations 1.21606 0.94134 1.01485 1.01776 1.21617 0.96537 0.99287 0.94248 0.89620 1.21506 0.79355 1.00195 0.98929 1.48070 1.06643 1.59290 1.18447 1.20007 0.88718 0.76726 0.81703 1.90643 1.76108 1.47439 1.32523 1.22374 0.89279 1.01053 1.04672 0.84078 1.24685 0.97541 0.95013 0.99889 0.85481 1.23492 0.85186 1.03834 0.87604 1.89173 1.43141 1.66282 1.32178 1.23054 0.85756 0.93441 0.97722 1.24178 0.97415 1.03846 0.93277 0.86404 1.21716 0.98431 0.96913 0.83199 1.22383 0.98099 1.00322 0.97306 1.20458 0.92533 0.85115 0.95656 0.93400 1.42601 1.79149 1.09260 1.05596 1.19613 1.34524 0.93812 0.87717 0.90573 1.25363 1.03619 0.98451 0.99007 1.69808 1.54010 1.12809 1.25482 0.85228 0.76337 0.78638 0.80490 1.19044 1.22607 1.22950 0.94182 0.91820 0.92087 0.90082 0.93171 0.86481 0.89914 0.86861 0.90411 0.92971 0.87609 0.91242 0.90465 0.79377 0.94441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 9.06 71.98 0.65 -3.47 16 2 C -0.10 -3.01 2.67 -10.72 -0.03 -3.04 16 3 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 4 C 0.12 4.12 5.42 86.36 0.47 4.59 16 5 N -0.59 -18.25 2.97 -818.91 -2.43 -20.69 16 6 C 0.54 16.31 7.48 87.65 0.66 16.97 16 7 O -0.59 -21.63 15.75 -3.06 -0.05 -21.68 16 8 C -0.15 -3.36 4.47 -11.54 -0.05 -3.42 16 9 H 0.14 2.62 6.83 -2.39 -0.02 2.60 16 10 C -0.15 -2.82 7.09 -9.04 -0.06 -2.88 16 11 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 12 C 0.08 1.11 7.48 73.23 0.55 1.66 16 13 O -0.39 -7.40 11.65 -148.98 -1.74 -9.14 16 14 C 0.08 1.26 7.44 72.49 0.54 1.79 16 15 C -0.17 -3.45 6.60 -9.79 -0.06 -3.51 16 16 H 0.12 2.79 7.81 -2.39 -0.02 2.77 16 17 C 0.12 3.45 6.03 86.36 0.52 3.97 16 18 C -0.14 -4.12 5.78 30.67 0.18 -3.94 16 19 C 0.17 5.99 2.53 45.02 0.11 6.11 16 20 H 0.05 1.72 8.08 -2.39 -0.02 1.70 16 21 N -0.72 -32.78 3.64 -322.81 -1.18 -33.95 16 22 C -0.22 -11.46 9.93 84.03 0.83 -10.62 16 23 H 0.08 3.74 7.83 -2.91 -0.02 3.72 16 24 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 25 N -0.97 -57.09 13.06 21.65 0.28 -56.81 16 26 Si 0.96 44.48 29.55 68.60 2.03 46.51 16 27 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 28 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 29 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 30 H 0.04 1.50 7.54 -2.39 -0.02 1.48 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.08 2.76 7.01 -2.38 -0.02 2.74 16 34 H 0.05 1.95 6.64 -2.39 -0.02 1.93 16 35 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.05 1.88 7.74 -2.39 -0.02 1.86 16 40 H 0.11 2.31 5.69 -2.39 -0.01 2.29 16 41 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 42 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.37 18.61 5.92 -92.71 -0.55 18.06 16 44 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -64.94 346.23 2.13 -62.81 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: 0.45 Total: 32.21 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 4.77 Total: 0.74 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -3.33 Total: -111.45 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -1.78 Total: -30.82 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -64.94 2.13 -62.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036150845.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.101 kcal (2) G-P(sol) polarization free energy of solvation -64.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds