Wall clock time and date at job start Tue Mar 31 2020 06:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.69981 * 2 1 4 4 C 1.53195 * 109.58774 * 120.35025 * 2 1 3 5 5 C 1.53043 * 109.31408 * 174.42297 * 4 2 1 6 6 H 1.09003 * 109.46163 * 58.64240 * 5 4 2 7 7 N 1.46503 * 109.46128 * 178.61501 * 5 4 2 8 8 C 1.36931 * 120.00184 * 205.00025 * 7 5 4 9 9 H 1.08007 * 119.99866 * 0.02562 * 8 7 5 10 10 C 1.38814 * 120.00138 * 179.97438 * 8 7 5 11 11 N 1.31614 * 120.00015 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 119.99976 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.46997 * 89.99469 * 12 10 8 14 14 H 1.48492 * 109.47012 * 209.99987 * 12 10 8 15 15 H 1.48504 * 109.46645 * 329.99562 * 12 10 8 16 16 C 1.53043 * 109.53784 * 298.63740 * 5 4 2 17 17 C 1.52759 * 109.38246 * 61.23910 * 16 5 4 18 18 N 1.46923 * 109.58928 * 239.64107 * 2 1 3 19 19 C 1.34773 * 120.62759 * 6.58078 * 18 2 1 20 20 O 1.21731 * 120.00366 * 7.69992 * 19 18 2 21 21 C 1.41804 * 119.99745 * 187.69708 * 19 18 2 22 22 C 1.33456 * 118.78709 * 220.67747 * 21 19 18 23 23 O 1.34353 * 123.08063 * 180.45704 * 22 21 19 24 24 C 1.45359 * 117.47544 * 343.63597 * 23 22 21 25 25 C 1.53491 * 108.25329 * 47.50480 * 24 23 22 26 26 C 1.50414 * 118.78636 * 40.70161 * 21 19 18 27 27 H 1.08999 * 109.46960 * 172.54700 * 1 2 3 28 28 H 1.09002 * 109.47072 * 292.54591 * 1 2 3 29 29 H 1.08997 * 109.46852 * 52.54481 * 1 2 3 30 30 H 1.09000 * 109.50085 * 294.37251 * 4 2 1 31 31 H 1.08997 * 109.49722 * 54.44179 * 4 2 1 32 32 H 0.96999 * 119.99472 * 24.99883 * 7 5 4 33 33 H 0.96998 * 120.00318 * 179.97438 * 11 10 8 34 34 H 1.09000 * 109.49572 * 181.31218 * 16 5 4 35 35 H 1.08994 * 109.49666 * 301.37935 * 16 5 4 36 36 H 1.09000 * 109.50841 * 185.70766 * 17 16 5 37 37 H 1.09000 * 109.43453 * 65.42539 * 17 16 5 38 38 H 1.08009 * 118.45717 * 0.43841 * 22 21 19 39 39 H 1.08995 * 109.72315 * 287.81567 * 24 23 22 40 40 H 1.08993 * 109.70129 * 167.18540 * 24 23 22 41 41 H 1.08999 * 109.70645 * 177.59544 * 25 24 23 42 42 H 1.08999 * 109.70140 * 56.97516 * 25 24 23 43 43 H 1.09003 * 109.45522 * 42.27806 * 26 21 19 44 44 H 1.09004 * 109.45488 * 282.32998 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 3.5675 -0.8479 1.1702 6 1 4.0062 0.1475 1.0991 7 7 4.0652 -1.5155 2.3756 8 6 5.3497 -1.2985 2.7976 9 1 5.9957 -0.6347 2.2421 10 6 5.8211 -1.9307 3.9400 11 7 7.0558 -1.7225 4.3453 12 14 4.7035 -3.0782 4.9011 13 1 4.8457 -4.4607 4.3779 14 1 5.0825 -3.0507 6.3366 15 1 3.2939 -2.6352 4.7527 16 6 3.9569 -1.6657 -0.0634 17 6 3.4645 -0.9519 -1.3209 18 7 2.0226 -0.6996 -1.1944 19 6 1.1674 -1.1071 -2.1530 20 8 -0.0031 -0.7762 -2.1052 21 6 1.6311 -1.9212 -3.2174 22 6 1.1836 -1.6818 -4.4517 23 8 1.5584 -2.4043 -5.5206 24 6 2.7431 -3.2358 -5.3861 25 6 2.6310 -4.0237 -4.0736 26 6 2.6089 -3.0231 -2.9135 27 1 -0.3633 -1.0190 -0.1333 28 1 -0.3633 0.3940 0.9491 29 1 -0.3633 0.6250 -0.8158 30 1 1.7661 -0.1667 2.1369 31 1 1.6026 -1.7250 1.2918 32 1 3.4848 -2.1113 2.8746 33 1 7.3852 -2.1640 5.1437 34 1 5.0412 -1.7695 -0.1035 35 1 3.4989 -2.6529 -0.0048 36 1 3.6504 -1.5799 -2.1923 37 1 3.9929 -0.0049 -1.4310 38 1 0.4873 -0.8692 -4.5981 39 1 3.6331 -2.6070 -5.3624 40 1 2.8036 -3.9278 -6.2260 41 1 3.4887 -4.6882 -3.9695 42 1 1.7106 -4.6076 -4.0730 43 1 2.3074 -3.5340 -1.9991 44 1 3.6042 -2.5989 -2.7809 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044489713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:47 Heat of formation + Delta-G solvation = -14.091860 kcal Electronic energy + Delta-G solvation = -24918.128228 eV Core-core repulsion = 21451.623809 eV Total energy + Delta-G solvation = -3466.504419 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.12559 -39.64547 -37.47052 -35.02364 -34.49252 -32.63112 -31.95440 -31.33160 -29.77364 -27.33714 -25.92162 -24.87684 -24.17334 -22.71258 -21.83138 -20.43989 -19.87610 -18.85301 -17.60663 -17.29400 -16.62961 -16.10028 -15.81788 -15.06873 -14.96701 -14.66548 -14.52934 -14.16419 -13.75889 -13.63977 -13.36920 -13.29412 -13.07591 -12.63923 -12.55713 -12.17978 -12.04554 -11.82621 -11.56072 -11.50594 -11.05516 -11.03261 -10.91933 -10.85638 -10.70991 -10.29871 -10.23281 -9.90702 -9.62558 -9.02699 -8.93822 -8.63943 -8.34660 -7.30875 -5.80780 -3.16363 1.42264 2.90276 3.13515 3.27023 3.34914 3.38582 3.43139 4.35550 4.42457 4.56005 4.59474 4.81099 4.90364 4.94593 5.01509 5.02097 5.21337 5.25320 5.32245 5.35832 5.45642 5.54626 5.56584 5.63840 5.73234 5.79868 5.90142 5.93980 5.97849 6.02856 6.08061 6.13750 6.30402 6.37816 6.40229 6.48814 6.69363 6.84247 6.96172 7.02602 7.62872 7.95074 8.34556 8.38462 9.16851 9.89800 10.09898 11.37530 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019989 B = 0.004220 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.404969 B = 6633.452881 C = 7443.415458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.147 3.853 3 H 0.070 0.930 4 C -0.138 4.138 5 C 0.184 3.816 6 H 0.055 0.945 7 N -0.748 5.748 8 C -0.244 4.244 9 H 0.090 0.910 10 C 0.006 3.994 11 N -0.934 5.934 12 Si 0.883 3.117 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.150 4.150 17 C 0.076 3.924 18 N -0.597 5.597 19 C 0.571 3.429 20 O -0.552 6.552 21 C -0.303 4.303 22 C 0.138 3.862 23 O -0.315 6.315 24 C 0.054 3.946 25 C -0.159 4.159 26 C -0.084 4.084 27 H 0.062 0.938 28 H 0.042 0.958 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.361 0.639 33 H 0.259 0.741 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.109 0.891 37 H 0.064 0.936 38 H 0.170 0.830 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.838 -1.396 -19.186 21.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.044 3.956 3 H 0.088 0.912 4 C -0.177 4.177 5 C 0.074 3.926 6 H 0.073 0.927 7 N -0.390 5.390 8 C -0.374 4.374 9 H 0.108 0.892 10 C -0.190 4.190 11 N -0.582 5.582 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.191 4.191 17 C -0.046 4.046 18 N -0.330 5.330 19 C 0.363 3.637 20 O -0.433 6.433 21 C -0.307 4.307 22 C 0.071 3.929 23 O -0.226 6.226 24 C -0.020 4.020 25 C -0.196 4.196 26 C -0.120 4.120 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.193 0.807 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.082 0.918 38 H 0.187 0.813 39 H 0.092 0.908 40 H 0.125 0.875 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.263 -1.151 -19.290 21.881 hybrid contribution -0.327 -1.012 1.215 1.615 sum -10.590 -2.164 -18.075 21.060 Atomic orbital electron populations 1.22151 0.92954 1.03502 1.00533 1.21247 0.95329 0.95207 0.83843 0.91161 1.22332 0.97484 1.00881 0.97009 1.20135 0.90784 0.95317 0.86363 0.92670 1.42798 1.13033 1.55123 1.28068 1.19068 0.87474 1.23390 1.07426 0.89199 1.24659 0.96075 1.00126 0.98158 1.69694 1.15086 1.47201 1.26174 0.86567 0.80576 0.81541 0.79952 1.21149 1.21739 1.20333 1.22541 1.01961 0.99744 0.94893 1.22586 0.79640 1.01355 1.01059 1.48124 1.07557 1.57134 1.20208 1.16669 0.85437 0.79582 0.82031 1.90845 1.17405 1.58426 1.76654 1.20130 1.10862 1.05124 0.94590 1.22655 0.93311 0.91738 0.85194 1.86241 1.44691 1.56049 1.35657 1.23534 0.86045 0.93255 0.99165 1.22246 1.04045 0.98624 0.94730 1.20863 0.98382 0.93797 0.98954 0.91918 0.93941 0.90726 0.90678 0.92039 0.80680 0.93048 0.90298 0.92393 0.87396 0.91788 0.81320 0.90819 0.87510 0.89380 0.90478 0.89902 0.88441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 7.61 37.16 0.28 -1.64 16 2 C 0.15 2.11 3.49 -67.60 -0.24 1.87 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.14 -2.20 4.84 -26.61 -0.13 -2.33 16 5 C 0.18 3.36 2.73 -67.88 -0.19 3.18 16 6 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 7 N -0.75 -17.16 4.92 -53.38 -0.26 -17.43 16 8 C -0.24 -6.66 10.41 -15.06 -0.16 -6.82 16 9 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 10 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 11 N -0.93 -28.86 13.97 55.49 0.78 -28.09 16 12 Si 0.88 21.90 27.74 -169.99 -4.71 17.18 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 15 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 16 C -0.15 -2.36 5.64 -26.83 -0.15 -2.51 16 17 C 0.08 0.95 5.74 -3.93 -0.02 0.93 16 18 N -0.60 -8.21 2.98 -168.81 -0.50 -8.71 16 19 C 0.57 8.04 6.76 -14.90 -0.10 7.94 16 20 O -0.55 -9.04 12.24 5.16 0.06 -8.98 16 21 C -0.30 -3.47 4.98 -105.07 -0.52 -3.99 16 22 C 0.14 1.44 10.41 29.06 0.30 1.74 16 23 O -0.32 -3.01 10.48 -14.90 -0.16 -3.16 16 24 C 0.05 0.37 7.15 37.41 0.27 0.63 16 25 C -0.16 -1.18 6.23 -26.37 -0.16 -1.35 16 26 C -0.08 -0.81 4.65 -27.91 -0.13 -0.94 16 27 H 0.06 0.99 6.86 -51.93 -0.36 0.63 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 1.12 6.64 -51.93 -0.34 0.77 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.36 8.28 5.66 -40.82 -0.23 8.04 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.11 1.14 2.83 -51.93 -0.15 0.99 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.17 1.66 7.77 -52.48 -0.41 1.26 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.10 0.87 5.02 -51.93 -0.26 0.61 16 LS Contribution 336.14 15.07 5.07 5.07 Total: -1.00 -32.25 336.14 -7.61 -39.85 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.83 Total: 7.48 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -1.04 Total: -3.21 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.01 Total: -54.22 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.09 Total: -12.14 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.18 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.25 -7.61 -39.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044489713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.759 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds