Wall clock time and date at job start Tue Mar 31 2020 06:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.69981 * 2 1 4 4 C 1.53195 * 109.58774 * 120.35025 * 2 1 3 5 5 C 1.53043 * 109.31408 * 174.42297 * 4 2 1 6 6 H 1.09003 * 109.46163 * 58.64240 * 5 4 2 7 7 N 1.46503 * 109.46128 * 178.61501 * 5 4 2 8 8 C 1.36931 * 120.00184 * 205.00025 * 7 5 4 9 9 H 1.08007 * 119.99866 * 0.02562 * 8 7 5 10 10 C 1.38814 * 120.00138 * 179.97438 * 8 7 5 11 11 N 1.31614 * 120.00015 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 119.99976 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.46997 * 89.99469 * 12 10 8 14 14 H 1.48492 * 109.47012 * 209.99987 * 12 10 8 15 15 H 1.48504 * 109.46645 * 329.99562 * 12 10 8 16 16 C 1.53043 * 109.53784 * 298.63740 * 5 4 2 17 17 C 1.52759 * 109.38246 * 61.23910 * 16 5 4 18 18 N 1.46923 * 109.58928 * 239.64107 * 2 1 3 19 19 C 1.34773 * 120.62759 * 6.58078 * 18 2 1 20 20 O 1.21731 * 120.00366 * 7.69992 * 19 18 2 21 21 C 1.41804 * 119.99745 * 187.69708 * 19 18 2 22 22 C 1.33456 * 118.78709 * 220.67747 * 21 19 18 23 23 O 1.34353 * 123.08063 * 180.45704 * 22 21 19 24 24 C 1.45359 * 117.47544 * 343.63597 * 23 22 21 25 25 C 1.53491 * 108.25329 * 47.50480 * 24 23 22 26 26 C 1.50414 * 118.78636 * 40.70161 * 21 19 18 27 27 H 1.08999 * 109.46960 * 172.54700 * 1 2 3 28 28 H 1.09002 * 109.47072 * 292.54591 * 1 2 3 29 29 H 1.08997 * 109.46852 * 52.54481 * 1 2 3 30 30 H 1.09000 * 109.50085 * 294.37251 * 4 2 1 31 31 H 1.08997 * 109.49722 * 54.44179 * 4 2 1 32 32 H 0.96999 * 119.99472 * 24.99883 * 7 5 4 33 33 H 0.96998 * 120.00318 * 179.97438 * 11 10 8 34 34 H 1.09000 * 109.49572 * 181.31218 * 16 5 4 35 35 H 1.08994 * 109.49666 * 301.37935 * 16 5 4 36 36 H 1.09000 * 109.50841 * 185.70766 * 17 16 5 37 37 H 1.09000 * 109.43453 * 65.42539 * 17 16 5 38 38 H 1.08009 * 118.45717 * 0.43841 * 22 21 19 39 39 H 1.08995 * 109.72315 * 287.81567 * 24 23 22 40 40 H 1.08993 * 109.70129 * 167.18540 * 24 23 22 41 41 H 1.08999 * 109.70645 * 177.59544 * 25 24 23 42 42 H 1.08999 * 109.70140 * 56.97516 * 25 24 23 43 43 H 1.09003 * 109.45522 * 42.27806 * 26 21 19 44 44 H 1.09004 * 109.45488 * 282.32998 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 3.5675 -0.8479 1.1702 6 1 4.0062 0.1475 1.0991 7 7 4.0652 -1.5155 2.3756 8 6 5.3497 -1.2985 2.7976 9 1 5.9957 -0.6347 2.2421 10 6 5.8211 -1.9307 3.9400 11 7 7.0558 -1.7225 4.3453 12 14 4.7035 -3.0782 4.9011 13 1 4.8457 -4.4607 4.3779 14 1 5.0825 -3.0507 6.3366 15 1 3.2939 -2.6352 4.7527 16 6 3.9569 -1.6657 -0.0634 17 6 3.4645 -0.9519 -1.3209 18 7 2.0226 -0.6996 -1.1944 19 6 1.1674 -1.1071 -2.1530 20 8 -0.0031 -0.7762 -2.1052 21 6 1.6311 -1.9212 -3.2174 22 6 1.1836 -1.6818 -4.4517 23 8 1.5584 -2.4043 -5.5206 24 6 2.7431 -3.2358 -5.3861 25 6 2.6310 -4.0237 -4.0736 26 6 2.6089 -3.0231 -2.9135 27 1 -0.3633 -1.0190 -0.1333 28 1 -0.3633 0.3940 0.9491 29 1 -0.3633 0.6250 -0.8158 30 1 1.7661 -0.1667 2.1369 31 1 1.6026 -1.7250 1.2918 32 1 3.4848 -2.1113 2.8746 33 1 7.3852 -2.1640 5.1437 34 1 5.0412 -1.7695 -0.1035 35 1 3.4989 -2.6529 -0.0048 36 1 3.6504 -1.5799 -2.1923 37 1 3.9929 -0.0049 -1.4310 38 1 0.4873 -0.8692 -4.5981 39 1 3.6331 -2.6070 -5.3624 40 1 2.8036 -3.9278 -6.2260 41 1 3.4887 -4.6882 -3.9695 42 1 1.7106 -4.6076 -4.0730 43 1 2.3074 -3.5340 -1.9991 44 1 3.6042 -2.5989 -2.7809 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044489713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:46 Heat of formation + Delta-G solvation = -35.116473 kcal Electronic energy + Delta-G solvation = -24919.039923 eV Core-core repulsion = 21451.623809 eV Total energy + Delta-G solvation = -3467.416115 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.10695 -40.52867 -38.78056 -36.33546 -35.70203 -33.84105 -33.52613 -32.26055 -31.43140 -28.58306 -26.69332 -26.05860 -25.41091 -24.27048 -22.88738 -21.79215 -21.01249 -19.91529 -19.40655 -18.23727 -17.46171 -17.23608 -16.72000 -16.57962 -16.05084 -15.91061 -15.61360 -15.58676 -15.02304 -14.82984 -14.58775 -14.32744 -14.13974 -14.01324 -13.86109 -13.59385 -13.20525 -13.06509 -12.95283 -12.63032 -12.55000 -12.23590 -12.10355 -12.03298 -12.01099 -11.79592 -11.60124 -11.38607 -11.29991 -10.85155 -10.13304 -9.59399 -9.39531 -9.28624 -8.01428 -5.34253 0.55077 1.38164 1.39663 1.47263 1.97319 2.19412 2.38102 2.48554 3.30117 3.48454 3.65131 3.75490 3.76974 3.90337 4.04086 4.04586 4.18770 4.25174 4.27239 4.36014 4.36565 4.52082 4.56933 4.60684 4.65905 4.70662 4.80314 4.84607 4.99564 5.01396 5.10070 5.13291 5.18120 5.21072 5.25912 5.30112 5.40717 5.49005 5.74818 5.78871 6.22727 6.25487 6.56577 7.08525 7.26082 7.85074 8.03841 9.20056 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019989 B = 0.004220 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.404969 B = 6633.452881 C = 7443.415458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.148 3.852 3 H 0.078 0.922 4 C -0.126 4.126 5 C 0.176 3.824 6 H 0.045 0.955 7 N -0.752 5.752 8 C -0.224 4.224 9 H 0.061 0.939 10 C -0.061 4.061 11 N -0.983 5.983 12 Si 0.950 3.050 13 H -0.280 1.280 14 H -0.298 1.298 15 H -0.256 1.256 16 C -0.139 4.139 17 C 0.084 3.916 18 N -0.599 5.599 19 C 0.570 3.430 20 O -0.580 6.580 21 C -0.322 4.322 22 C 0.156 3.844 23 O -0.321 6.321 24 C 0.049 3.951 25 C -0.154 4.154 26 C -0.082 4.082 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.363 0.637 33 H 0.257 0.743 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.135 0.865 37 H 0.071 0.929 38 H 0.171 0.829 39 H 0.087 0.913 40 H 0.132 0.868 41 H 0.108 0.892 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.938 -2.245 -20.896 23.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.045 3.955 3 H 0.096 0.904 4 C -0.165 4.165 5 C 0.068 3.932 6 H 0.063 0.937 7 N -0.395 5.395 8 C -0.355 4.355 9 H 0.079 0.921 10 C -0.253 4.253 11 N -0.634 5.634 12 Si 0.778 3.222 13 H -0.206 1.206 14 H -0.225 1.225 15 H -0.181 1.181 16 C -0.180 4.180 17 C -0.038 4.038 18 N -0.332 5.332 19 C 0.363 3.637 20 O -0.463 6.463 21 C -0.327 4.327 22 C 0.088 3.912 23 O -0.232 6.232 24 C -0.024 4.024 25 C -0.192 4.192 26 C -0.118 4.118 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.195 0.805 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.152 0.848 37 H 0.090 0.910 38 H 0.188 0.812 39 H 0.106 0.894 40 H 0.150 0.850 41 H 0.127 0.873 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.398 -1.998 -21.055 24.026 hybrid contribution 0.016 -0.693 1.612 1.754 sum -11.382 -2.691 -19.444 22.690 Atomic orbital electron populations 1.21992 0.92661 1.02329 1.00920 1.21210 0.95432 0.95440 0.83447 0.90362 1.22195 0.95365 1.00980 0.98003 1.20380 0.92315 0.94776 0.85707 0.93698 1.42831 1.11481 1.55540 1.29617 1.19027 0.88695 1.21388 1.06415 0.92107 1.25407 0.97548 1.02583 0.99719 1.69864 1.17325 1.49236 1.27007 0.85487 0.79599 0.79425 0.77725 1.20589 1.22488 1.18081 1.22326 1.01036 0.99544 0.95059 1.22612 0.78971 1.01895 1.00303 1.48161 1.07921 1.57024 1.20053 1.17031 0.85004 0.79294 0.82376 1.90831 1.18509 1.59571 1.77402 1.20053 1.12562 1.05912 0.94144 1.22697 0.92167 0.91225 0.85129 1.86245 1.45767 1.56013 1.35221 1.23845 0.85368 0.93477 0.99722 1.22235 1.04597 0.98252 0.94073 1.20817 0.97955 0.93704 0.99290 0.93574 0.92665 0.91407 0.90678 0.92333 0.80454 0.93436 0.91741 0.92464 0.84826 0.91046 0.81222 0.89443 0.85009 0.87346 0.91262 0.91539 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.35 7.61 71.98 0.55 -2.80 16 2 C 0.15 4.07 3.49 44.97 0.16 4.22 16 3 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 4 C -0.13 -3.88 4.84 30.67 0.15 -3.73 16 5 C 0.18 6.32 2.73 45.02 0.12 6.45 16 6 H 0.04 1.71 8.08 -2.39 -0.02 1.69 16 7 N -0.75 -34.04 4.92 -322.79 -1.59 -35.63 16 8 C -0.22 -12.39 10.41 84.03 0.87 -11.51 16 9 H 0.06 3.66 8.06 -2.91 -0.02 3.63 16 10 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 11 N -0.98 -62.17 13.97 21.65 0.30 -61.87 16 12 Si 0.95 45.20 27.74 68.60 1.90 47.10 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 14 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 15 H -0.26 -11.14 6.52 99.48 0.65 -10.49 16 16 C -0.14 -4.22 5.64 30.53 0.17 -4.05 16 17 C 0.08 1.96 5.74 86.22 0.50 2.46 16 18 N -0.60 -15.62 2.98 -806.20 -2.40 -18.01 16 19 C 0.57 15.34 6.76 85.12 0.58 15.91 16 20 O -0.58 -18.58 12.24 -4.45 -0.05 -18.64 16 21 C -0.32 -6.81 4.98 -20.16 -0.10 -6.91 16 22 C 0.16 2.94 10.41 66.74 0.69 3.64 16 23 O -0.32 -5.28 10.48 -76.22 -0.80 -6.08 16 24 C 0.05 0.50 7.15 72.15 0.52 1.02 16 25 C -0.15 -1.86 6.23 30.83 0.19 -1.67 16 26 C -0.08 -1.40 4.65 29.83 0.14 -1.26 16 27 H 0.05 1.42 6.86 -2.39 -0.02 1.40 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.97 6.64 -2.39 -0.02 1.96 16 30 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.36 16.08 5.66 -92.71 -0.52 15.56 16 33 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 34 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.13 2.50 2.83 -2.39 -0.01 2.50 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.17 3.10 7.77 -2.91 -0.02 3.08 16 39 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.11 1.57 5.02 -2.39 -0.01 1.56 16 Total: -1.00 -70.14 336.14 2.78 -67.36 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.42 Total: 27.08 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 5.00 Total: -1.32 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -3.69 Total: -115.51 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.85 Total: -24.72 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.90 Total: 47.10 kcal Total: -70.14 2.78 -67.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044489713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.244 kcal (2) G-P(sol) polarization free energy of solvation -70.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds