Wall clock time and date at job start Tue Mar 31 2020 06:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.70423 * 2 1 4 4 C 1.53194 * 109.58738 * 239.64730 * 2 1 3 5 5 C 1.53036 * 109.31555 * 185.57934 * 4 2 1 6 6 H 1.08999 * 109.45555 * 301.35431 * 5 4 2 7 7 N 1.46503 * 109.45949 * 181.38620 * 5 4 2 8 8 C 1.36935 * 119.99505 * 154.97256 * 7 5 4 9 9 H 1.07991 * 120.00501 * 359.72101 * 8 7 5 10 10 C 1.38815 * 119.99682 * 179.97438 * 8 7 5 11 11 N 1.31624 * 119.99861 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00205 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46924 * 89.99950 * 12 10 8 14 14 H 1.48499 * 109.47156 * 209.99757 * 12 10 8 15 15 H 1.48494 * 109.47066 * 330.00347 * 12 10 8 16 16 C 1.53037 * 109.52752 * 61.37104 * 5 4 2 17 17 C 1.53198 * 109.31247 * 298.61364 * 16 5 4 18 18 N 1.46922 * 109.58691 * 120.35867 * 2 1 3 19 19 C 1.34776 * 120.63237 * 353.36985 * 18 2 1 20 20 O 1.21742 * 119.99951 * 5.52666 * 19 18 2 21 21 C 1.41792 * 120.00373 * 185.52034 * 19 18 2 22 22 C 1.33455 * 118.78973 * 238.90580 * 21 19 18 23 23 O 1.34358 * 123.08193 * 180.36663 * 22 21 19 24 24 C 1.45348 * 117.47905 * 343.69406 * 23 22 21 25 25 C 1.53483 * 108.26302 * 47.47811 * 24 23 22 26 26 C 1.50414 * 118.78770 * 58.63299 * 21 19 18 27 27 H 1.09001 * 109.47114 * 183.77844 * 1 2 3 28 28 H 1.08998 * 109.46922 * 303.77488 * 1 2 3 29 29 H 1.08998 * 109.47278 * 63.77188 * 1 2 3 30 30 H 1.09000 * 109.49389 * 65.62288 * 4 2 1 31 31 H 1.09001 * 109.49548 * 305.53411 * 4 2 1 32 32 H 0.96996 * 120.00145 * 334.96876 * 7 5 4 33 33 H 0.96999 * 119.99988 * 180.02562 * 11 10 8 34 34 H 1.09002 * 109.49600 * 58.57928 * 16 5 4 35 35 H 1.08996 * 109.49996 * 178.68051 * 16 5 4 36 36 H 1.08999 * 109.60040 * 294.87234 * 17 16 5 37 37 H 1.08998 * 109.70295 * 174.50140 * 17 16 5 38 38 H 1.08004 * 118.46239 * 0.38895 * 22 21 19 39 39 H 1.09002 * 109.70239 * 167.16562 * 24 23 22 40 40 H 1.09003 * 109.70825 * 287.74302 * 24 23 22 41 41 H 1.08996 * 109.71023 * 56.98967 * 25 24 23 42 42 H 1.09003 * 109.70361 * 177.60723 * 25 24 23 43 43 H 1.09005 * 109.45735 * 282.38560 * 26 21 19 44 44 H 1.09005 * 109.45256 * 42.32301 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7293 -1.2455 5 6 3.5675 -0.8480 -1.1702 6 1 4.0061 0.1473 -1.0992 7 7 4.0652 -1.5157 -2.3756 8 6 5.3495 -1.2982 -2.7978 9 1 5.9941 -0.6310 -2.2450 10 6 5.8212 -1.9313 -3.9396 11 7 5.0338 -2.7402 -4.6165 12 14 7.5730 -1.6341 -4.5162 13 1 8.4762 -2.6328 -3.8902 14 1 7.6369 -1.7666 -5.9939 15 1 7.9983 -0.2669 -4.1229 16 6 3.9566 -1.6659 0.0633 17 6 3.4651 -0.9470 1.3237 18 7 2.0226 -0.6996 1.1944 19 6 1.1675 -1.1062 2.1536 20 8 -0.0328 -0.9856 1.9899 21 6 1.6659 -1.6746 3.3532 22 6 1.2920 -2.9129 3.6815 23 8 1.7056 -3.5316 4.8001 24 6 2.8591 -2.9747 5.4871 25 6 2.6556 -1.4590 5.6175 26 6 2.6014 -0.8619 4.2057 27 1 -0.3633 -1.0254 0.0677 28 1 -0.3633 0.5713 0.8542 29 1 -0.3634 0.4542 -0.9218 30 1 1.7660 -0.1667 -2.1368 31 1 1.6029 -1.7252 -1.2914 32 1 3.4850 -2.1118 -2.8744 33 1 5.3636 -3.1828 -5.4142 34 1 3.4978 -2.6530 0.0049 35 1 5.0408 -1.7700 0.1036 36 1 3.9903 0.0020 1.4316 37 1 3.6520 -1.5698 2.1985 38 1 0.6258 -3.4427 3.0166 39 1 2.9471 -3.4203 6.4780 40 1 3.7626 -3.1767 4.9117 41 1 1.7219 -1.2572 6.1423 42 1 3.4890 -1.0224 6.1680 43 1 3.5980 -0.8741 3.7643 44 1 2.2418 0.1656 4.2613 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044489714.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:49 Heat of formation + Delta-G solvation = -53.607382 kcal Electronic energy + Delta-G solvation = -24733.295347 eV Core-core repulsion = 21265.077407 eV Total energy + Delta-G solvation = -3468.217941 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.01137 -40.53102 -38.70087 -36.16391 -35.49092 -33.73378 -33.64361 -32.23690 -30.91789 -28.41297 -26.69220 -26.08952 -25.37256 -24.41280 -23.01170 -21.81938 -20.90198 -19.62737 -19.10168 -18.21538 -17.56842 -17.06185 -16.69778 -16.62839 -16.09324 -15.83568 -15.52171 -15.47218 -14.92214 -14.81470 -14.62964 -14.27972 -14.07973 -13.75592 -13.72797 -13.44785 -13.23548 -13.05531 -12.86882 -12.65453 -12.60300 -12.16189 -12.12025 -12.04550 -11.96207 -11.77093 -11.58765 -11.56673 -11.34516 -10.87306 -10.14650 -9.57626 -9.37531 -9.00464 -7.92416 -5.21475 0.68780 1.48895 1.50219 1.58582 1.73134 2.19278 2.39958 2.57539 3.40812 3.62314 3.74050 3.79137 3.84616 3.99384 4.03408 4.08572 4.22981 4.28100 4.31576 4.34040 4.38619 4.58252 4.59890 4.63477 4.71268 4.72739 4.79735 4.86251 4.97548 5.01352 5.07024 5.14864 5.16652 5.23656 5.26027 5.30512 5.43033 5.50637 5.54940 5.73960 6.27527 6.29025 6.53568 7.22808 7.34914 8.10364 8.33781 9.31359 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019596 B = 0.003904 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.550786 B = 7169.933594 C = 7994.007989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.150 3.850 3 H 0.085 0.915 4 C -0.123 4.123 5 C 0.174 3.826 6 H 0.050 0.950 7 N -0.739 5.739 8 C -0.235 4.235 9 H 0.080 0.920 10 C -0.077 4.077 11 N -0.973 5.973 12 Si 0.971 3.029 13 H -0.287 1.287 14 H -0.300 1.300 15 H -0.267 1.267 16 C -0.139 4.139 17 C 0.118 3.882 18 N -0.599 5.599 19 C 0.571 3.429 20 O -0.576 6.576 21 C -0.310 4.310 22 C 0.131 3.869 23 O -0.325 6.325 24 C 0.046 3.954 25 C -0.150 4.150 26 C -0.068 4.068 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.369 0.631 33 H 0.249 0.751 34 H 0.041 0.959 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.158 0.842 39 H 0.131 0.869 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.092 0.908 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.626 4.018 22.637 23.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.046 3.954 3 H 0.103 0.897 4 C -0.162 4.162 5 C 0.066 3.934 6 H 0.068 0.932 7 N -0.378 5.378 8 C -0.367 4.367 9 H 0.098 0.902 10 C -0.269 4.269 11 N -0.624 5.624 12 Si 0.801 3.199 13 H -0.215 1.215 14 H -0.227 1.227 15 H -0.192 1.192 16 C -0.180 4.180 17 C -0.005 4.005 18 N -0.331 5.331 19 C 0.362 3.638 20 O -0.458 6.458 21 C -0.315 4.315 22 C 0.064 3.936 23 O -0.237 6.237 24 C -0.028 4.028 25 C -0.187 4.187 26 C -0.106 4.106 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.201 0.799 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.122 0.878 38 H 0.175 0.825 39 H 0.149 0.851 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.131 0.869 43 H 0.110 0.890 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.120 4.008 22.645 23.363 hybrid contribution 0.656 -0.269 -1.320 1.498 sum -3.464 3.739 21.324 21.925 Atomic orbital electron populations 1.22025 0.92811 1.02352 1.00579 1.21252 0.95351 0.95439 0.83344 0.89663 1.22144 0.95923 1.00340 0.97785 1.20406 0.92142 0.94762 0.86131 0.93216 1.42669 1.12167 1.54559 1.28359 1.19644 0.90084 1.20904 1.06082 0.90198 1.25555 1.02029 1.00498 0.98857 1.69833 1.37175 1.35311 1.20067 0.85165 0.80091 0.78109 0.76567 1.21464 1.22675 1.19162 1.22450 1.00993 0.99098 0.95496 1.21949 0.78886 1.01342 0.98313 1.48269 1.08143 1.57005 1.19721 1.17135 0.85605 0.77443 0.83599 1.90865 1.16733 1.57263 1.80968 1.20090 1.12536 0.98176 1.00690 1.22449 0.93290 0.91483 0.86372 1.86232 1.47657 1.53705 1.36066 1.23853 0.86012 0.94270 0.98621 1.22222 1.04587 0.95322 0.96564 1.20469 0.97909 0.98202 0.93975 0.93151 0.91966 0.92922 0.91229 0.93432 0.79933 0.94199 0.94032 0.91441 0.89647 0.87797 0.82490 0.85124 0.89957 0.91096 0.86861 0.89006 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.54 7.59 71.98 0.55 -2.99 16 2 C 0.15 4.29 3.49 44.98 0.16 4.45 16 3 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 4 C -0.12 -4.16 4.84 30.67 0.15 -4.01 16 5 C 0.17 6.58 2.73 45.02 0.12 6.70 16 6 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 7 N -0.74 -36.66 5.12 -322.82 -1.65 -38.31 16 8 C -0.24 -12.70 9.93 84.03 0.83 -11.87 16 9 H 0.08 4.07 7.83 -2.92 -0.02 4.05 16 10 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 11 N -0.97 -59.57 13.06 21.65 0.28 -59.29 16 12 Si 0.97 45.36 29.55 68.60 2.03 47.39 16 13 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 14 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 15 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 16 C -0.14 -4.53 5.66 30.67 0.17 -4.36 16 17 C 0.12 2.80 5.45 86.36 0.47 3.27 16 18 N -0.60 -16.18 2.97 -805.35 -2.39 -18.57 16 19 C 0.57 16.11 6.64 85.12 0.57 16.67 16 20 O -0.58 -19.71 12.41 -4.48 -0.06 -19.76 16 21 C -0.31 -6.90 4.16 -20.16 -0.08 -6.98 16 22 C 0.13 2.86 10.52 66.74 0.70 3.56 16 23 O -0.32 -6.18 10.48 -76.26 -0.80 -6.98 16 24 C 0.05 0.52 7.15 72.14 0.52 1.03 16 25 C -0.15 -1.61 6.24 30.89 0.19 -1.42 16 26 C -0.07 -1.06 5.31 29.89 0.16 -0.91 16 27 H 0.05 1.68 6.73 -2.39 -0.02 1.66 16 28 H 0.06 1.89 6.76 -2.39 -0.02 1.88 16 29 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.37 20.18 7.80 -92.71 -0.72 19.46 16 33 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.10 2.05 4.83 -2.39 -0.01 2.04 16 38 H 0.16 3.53 7.98 -2.91 -0.02 3.51 16 39 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.09 1.19 5.93 -2.38 -0.01 1.18 16 44 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -68.80 342.09 2.65 -66.15 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.27 Total: 30.16 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 4.97 Total: -0.78 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -3.76 Total: -116.17 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.85 Total: -26.74 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -68.80 2.65 -66.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044489714.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.539 kcal (2) G-P(sol) polarization free energy of solvation -68.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds