Wall clock time and date at job start Tue Mar 31 2020 06:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.58536 * 2 1 4 4 C 1.53194 * 109.58798 * 120.28423 * 2 1 3 5 5 C 1.53042 * 109.31308 * 174.56726 * 4 2 1 6 6 H 1.08997 * 109.45844 * 178.62447 * 5 4 2 7 7 N 1.46500 * 109.46162 * 58.64898 * 5 4 2 8 8 C 1.36938 * 119.99501 * 154.99995 * 7 5 4 9 9 H 1.07994 * 120.00269 * 0.02562 * 8 7 5 10 10 C 1.38819 * 119.99570 * 180.02562 * 8 7 5 11 11 N 1.31618 * 120.00151 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99702 * 180.02562 * 10 8 7 13 13 H 1.48507 * 109.47071 * 89.99822 * 12 10 8 14 14 H 1.48500 * 109.47239 * 329.99809 * 12 10 8 15 15 H 1.48498 * 109.46992 * 209.99496 * 12 10 8 16 16 C 1.53047 * 109.53376 * 298.63340 * 5 4 2 17 17 C 1.53181 * 109.31365 * 61.36494 * 16 5 4 18 18 N 1.46926 * 109.70195 * 239.64470 * 2 1 3 19 19 C 1.34779 * 120.63256 * 6.55376 * 18 2 1 20 20 O 1.21735 * 119.99976 * 3.97608 * 19 18 2 21 21 C 1.41799 * 119.99823 * 183.97788 * 19 18 2 22 22 C 1.33455 * 118.78419 * 229.86300 * 21 19 18 23 23 O 1.34356 * 123.07875 * 180.36666 * 22 21 19 24 24 C 1.45352 * 117.47715 * 343.70498 * 23 22 21 25 25 C 1.53474 * 108.26773 * 47.47522 * 24 23 22 26 26 C 1.50413 * 118.78549 * 49.59964 * 21 19 18 27 27 H 1.09007 * 109.47230 * 294.61699 * 1 2 3 28 28 H 1.08999 * 109.47452 * 54.62226 * 1 2 3 29 29 H 1.08999 * 109.47361 * 174.62054 * 1 2 3 30 30 H 1.08998 * 109.49672 * 54.61362 * 4 2 1 31 31 H 1.09001 * 109.49569 * 294.51409 * 4 2 1 32 32 H 0.96992 * 119.99910 * 335.00502 * 7 5 4 33 33 H 0.97003 * 119.99450 * 0.02562 * 11 10 8 34 34 H 1.09002 * 109.49398 * 181.32088 * 16 5 4 35 35 H 1.09006 * 109.49417 * 301.41234 * 16 5 4 36 36 H 1.09001 * 109.59051 * 185.57402 * 17 16 5 37 37 H 1.09001 * 109.58980 * 65.15350 * 17 16 5 38 38 H 1.08001 * 118.46113 * 0.40181 * 22 21 19 39 39 H 1.09008 * 109.70355 * 167.16453 * 24 23 22 40 40 H 1.08996 * 109.70602 * 287.73066 * 24 23 22 41 41 H 1.08998 * 109.71193 * 56.98574 * 25 24 23 42 42 H 1.09008 * 109.70598 * 177.56372 * 25 24 23 43 43 H 1.08998 * 109.46065 * 282.37673 * 26 21 19 44 44 H 1.08998 * 109.45785 * 42.32257 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2463 5 6 3.5678 -0.8433 1.1729 6 1 3.9380 -1.3392 2.0702 7 7 4.1547 0.4956 1.0777 8 6 5.4382 0.7123 1.5032 9 1 6.0178 -0.1038 1.9085 10 6 5.9942 1.9811 1.4135 11 7 5.2879 2.9757 0.9191 12 14 7.7451 2.2766 1.9932 13 1 8.6843 2.0560 0.8642 14 1 8.0670 1.3355 3.0959 15 1 7.8762 3.6733 2.4804 16 6 3.9603 -1.6608 -0.0600 17 6 3.4685 -0.9436 -1.3210 18 7 2.0253 -0.6990 -1.1936 19 6 1.1721 -1.1078 -2.1536 20 8 -0.0116 -0.8357 -2.0720 21 6 1.6534 -1.8549 -3.2585 22 6 1.3161 -1.4693 -4.4908 23 8 1.7172 -2.1171 -5.5975 24 6 2.8264 -3.0470 -5.4653 25 6 2.5620 -3.9411 -4.2463 26 6 2.5301 -3.0492 -2.9987 27 1 -0.3634 0.4281 0.9343 28 1 -0.3634 0.5950 -0.8379 29 1 -0.3634 -1.0231 -0.0963 30 1 1.6049 -1.7246 1.2921 31 1 1.7638 -0.1654 2.1372 32 1 3.6342 1.2285 0.7135 33 1 4.3788 2.8220 0.6178 34 1 5.0449 -1.7625 -0.0988 35 1 3.5036 -2.6489 -0.0018 36 1 3.6575 -1.5683 -2.1940 37 1 3.9919 0.0064 -1.4288 38 1 0.6919 -0.5952 -4.6038 39 1 2.8998 -3.6615 -6.3627 40 1 3.7546 -2.4939 -5.3220 41 1 1.6051 -4.4496 -4.3639 42 1 3.3601 -4.6774 -4.1505 43 1 3.5399 -2.7138 -2.7623 44 1 2.1305 -3.6171 -2.1585 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044489715.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:52 Heat of formation + Delta-G solvation = -20.088686 kcal Electronic energy + Delta-G solvation = -25316.141145 eV Core-core repulsion = 21849.376684 eV Total energy + Delta-G solvation = -3466.764461 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.98098 -39.57029 -37.47997 -34.81592 -34.26040 -32.57406 -32.02888 -31.20681 -28.83508 -27.11873 -25.85064 -24.74623 -23.89576 -23.41423 -21.83400 -20.73827 -19.35128 -18.43037 -17.34032 -17.10734 -16.57365 -15.99615 -15.71113 -15.20004 -14.82027 -14.65430 -14.35549 -14.01377 -13.69324 -13.53138 -13.36175 -13.22295 -13.16152 -12.89236 -12.44819 -12.02722 -11.88578 -11.58135 -11.43298 -11.36722 -11.04763 -10.83870 -10.78278 -10.64907 -10.42257 -10.20111 -10.10587 -10.00964 -9.18922 -8.96005 -8.86222 -8.50262 -8.12381 -7.06186 -6.12217 -3.12544 1.60029 2.96115 3.20506 3.44147 3.49109 3.53579 3.67841 4.41348 4.48930 4.64556 4.67689 4.94251 4.99463 5.05119 5.11593 5.26003 5.27997 5.37107 5.42306 5.46350 5.53643 5.64946 5.69327 5.70553 5.83173 5.84140 5.96345 5.99617 6.08552 6.15648 6.19025 6.25286 6.38896 6.45737 6.57835 6.68216 6.71711 6.77306 7.04611 7.13781 7.79066 7.80087 8.48606 8.72798 9.19837 10.06321 10.21921 11.35658 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017955 B = 0.004638 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.091047 B = 6035.724472 C = 6761.837553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.145 3.855 3 H 0.072 0.928 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.050 0.950 7 N -0.733 5.733 8 C -0.330 4.330 9 H 0.064 0.936 10 C -0.044 4.044 11 N -0.944 5.944 12 Si 1.081 2.919 13 H -0.296 1.296 14 H -0.295 1.295 15 H -0.288 1.288 16 C -0.148 4.148 17 C 0.095 3.905 18 N -0.592 5.592 19 C 0.569 3.431 20 O -0.553 6.553 21 C -0.297 4.297 22 C 0.130 3.870 23 O -0.315 6.315 24 C 0.054 3.946 25 C -0.157 4.157 26 C -0.078 4.078 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.367 0.633 33 H 0.254 0.746 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.168 0.832 39 H 0.106 0.894 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.471 -13.707 -9.970 17.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.042 3.958 3 H 0.090 0.910 4 C -0.173 4.173 5 C 0.069 3.931 6 H 0.068 0.932 7 N -0.377 5.377 8 C -0.461 4.461 9 H 0.082 0.918 10 C -0.242 4.242 11 N -0.589 5.589 12 Si 0.912 3.088 13 H -0.224 1.224 14 H -0.222 1.222 15 H -0.215 1.215 16 C -0.189 4.189 17 C -0.026 4.026 18 N -0.324 5.324 19 C 0.359 3.641 20 O -0.434 6.434 21 C -0.301 4.301 22 C 0.063 3.937 23 O -0.227 6.227 24 C -0.021 4.021 25 C -0.194 4.194 26 C -0.115 4.115 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.201 0.799 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.185 0.815 39 H 0.124 0.876 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.110 0.890 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.802 -12.559 -9.825 16.653 hybrid contribution -0.978 -1.090 0.073 1.467 sum -5.781 -13.649 -9.752 17.743 Atomic orbital electron populations 1.22168 0.93119 1.03114 1.00557 1.21200 0.94910 0.95681 0.83986 0.90966 1.22257 0.97380 1.00318 0.97354 1.20118 0.90282 0.87664 0.95035 0.93181 1.42512 1.14107 1.04778 1.76264 1.20059 0.90556 0.96937 1.38550 0.91790 1.25719 1.06031 0.91557 1.00881 1.70860 1.10959 1.32444 1.44637 0.83214 0.74383 0.75567 0.75614 1.22414 1.22216 1.21451 1.22484 1.01265 0.97910 0.97227 1.22229 0.79287 1.01961 0.99164 1.48141 1.07667 1.56515 1.20064 1.16707 0.85761 0.79168 0.82427 1.90848 1.16435 1.58361 1.77746 1.20103 1.12098 1.03744 0.94183 1.22552 0.93119 0.93477 0.84528 1.86233 1.49473 1.54821 1.32135 1.23512 0.88014 0.90784 0.99748 1.22249 1.03659 0.98478 0.95050 1.20727 0.99381 0.93299 0.98088 0.94182 0.90768 0.92015 0.92044 0.90931 0.79906 0.93451 0.90947 0.93307 0.88990 0.90548 0.81533 0.87588 0.90851 0.90474 0.89595 0.88959 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 7.61 37.16 0.28 -1.89 16 2 C 0.15 2.51 3.19 -67.60 -0.22 2.29 16 3 H 0.07 1.40 6.64 -51.93 -0.34 1.05 16 4 C -0.13 -2.27 5.07 -26.61 -0.13 -2.41 16 5 C 0.18 3.44 3.10 -67.88 -0.21 3.23 16 6 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 7 N -0.73 -17.35 4.31 -53.38 -0.23 -17.58 16 8 C -0.33 -8.86 9.93 -15.06 -0.15 -9.01 16 9 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 10 C -0.04 -1.25 5.50 -17.43 -0.10 -1.34 16 11 N -0.94 -28.59 13.70 55.49 0.76 -27.83 16 12 Si 1.08 25.42 29.92 -169.99 -5.09 20.33 16 13 H -0.30 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.30 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 C -0.15 -2.44 5.78 -26.61 -0.15 -2.59 16 17 C 0.10 1.53 5.63 -3.72 -0.02 1.51 16 18 N -0.59 -9.69 2.97 -168.55 -0.50 -10.19 16 19 C 0.57 9.19 6.70 -14.90 -0.10 9.09 16 20 O -0.55 -10.15 12.39 5.16 0.06 -10.08 16 21 C -0.30 -3.92 4.73 -105.07 -0.50 -4.41 16 22 C 0.13 1.59 10.45 29.06 0.30 1.90 16 23 O -0.32 -3.48 10.48 -14.90 -0.16 -3.64 16 24 C 0.05 0.43 7.14 37.40 0.27 0.70 16 25 C -0.16 -1.27 6.24 -26.28 -0.16 -1.43 16 26 C -0.08 -0.84 4.98 -27.82 -0.14 -0.97 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.30 6.59 -51.93 -0.34 0.96 16 29 H 0.06 1.05 6.91 -51.93 -0.36 0.69 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.37 9.10 4.89 -40.82 -0.20 8.90 16 33 H 0.25 7.63 6.77 -40.82 -0.28 7.35 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.09 1.24 3.17 -51.93 -0.16 1.07 16 37 H 0.08 1.47 7.74 -51.93 -0.40 1.07 16 38 H 0.17 1.98 7.93 -52.49 -0.42 1.56 16 39 H 0.11 0.60 8.14 -51.92 -0.42 0.18 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 43 H 0.09 0.96 5.17 -51.93 -0.27 0.69 16 44 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 334.27 15.07 5.04 5.04 Total: -1.00 -31.62 334.27 -7.76 -39.39 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.63 Total: 9.93 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -1.03 Total: -5.36 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 0.03 Total: -55.60 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.09 Total: -13.72 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.09 Total: 20.33 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.62 -7.76 -39.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044489715.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.297 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds