Wall clock time and date at job start Tue Mar 31 2020 06:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.33022 * 2 1 4 4 C 1.54482 * 110.37383 * 237.75227 * 2 1 3 5 5 C 1.54504 * 104.06129 * 217.18953 * 4 2 1 6 6 H 1.09000 * 110.51418 * 118.64052 * 5 4 2 7 7 C 1.50700 * 110.50959 * 241.35265 * 5 4 2 8 8 O 1.21276 * 120.00183 * 0.02562 * 7 5 4 9 9 N 1.34780 * 119.99988 * 179.97438 * 7 5 4 10 10 C 1.46666 * 125.33720 * 179.97438 * 9 7 5 11 11 C 1.53732 * 107.94251 * 180.54794 * 10 9 7 12 12 H 1.08998 * 112.55911 * 139.71914 * 11 10 9 13 13 C 1.53687 * 109.33990 * 266.25466 * 11 10 9 14 14 N 1.46639 * 108.00961 * 127.55633 * 13 11 10 15 15 C 1.36935 * 125.32976 * 180.81248 * 14 13 11 16 16 H 1.08004 * 120.00028 * 174.01296 * 15 14 13 17 17 C 1.38813 * 120.00203 * 354.01281 * 15 14 13 18 18 N 1.31617 * 119.99454 * 6.94213 * 17 15 14 19 19 Si 1.86794 * 120.00059 * 186.94123 * 17 15 14 20 20 H 1.48497 * 109.47200 * 94.98877 * 19 17 15 21 21 H 1.48502 * 109.47135 * 214.98519 * 19 17 15 22 22 H 1.48497 * 109.47280 * 334.98478 * 19 17 15 23 23 C 1.46750 * 109.34012 * 0.83453 * 14 13 11 24 24 C 1.53925 * 106.71922 * 341.66115 * 23 14 13 25 25 H 1.09000 * 113.01010 * 150.83861 * 24 23 14 26 26 C 1.46777 * 125.33732 * 359.70340 * 9 7 5 27 27 C 1.54484 * 104.06465 * 359.97438 * 5 4 2 28 28 O 1.44422 * 110.37268 * 122.24927 * 2 1 3 29 29 H 1.09004 * 109.47212 * 180.69859 * 1 2 3 30 30 H 1.09005 * 109.47179 * 60.70407 * 1 2 3 31 31 H 1.09003 * 109.47615 * 300.70287 * 1 2 3 32 32 H 1.09001 * 110.50580 * 335.83261 * 4 2 1 33 33 H 1.08992 * 110.51158 * 98.40527 * 4 2 1 34 34 H 1.09006 * 109.77350 * 300.16581 * 10 9 7 35 35 H 1.08995 * 109.77492 * 60.92866 * 10 9 7 36 36 H 1.09001 * 109.75937 * 247.19617 * 13 11 10 37 37 H 1.08997 * 109.76245 * 7.91305 * 13 11 10 38 38 H 0.97004 * 119.99698 * 180.02562 * 18 17 15 39 39 H 1.08994 * 110.00839 * 222.34103 * 23 14 13 40 40 H 1.08995 * 110.00637 * 100.97489 * 23 14 13 41 41 H 1.09005 * 110.02221 * 280.76377 * 26 9 7 42 42 H 1.09000 * 110.03277 * 42.17980 * 26 9 7 43 43 H 1.09005 * 110.37063 * 142.81099 * 27 5 4 44 44 H 1.08999 * 110.37385 * 265.15017 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7727 -1.2248 5 6 3.3178 -1.5049 -0.6875 6 1 3.1956 -2.5844 -0.7758 7 6 4.5525 -1.0500 -1.4219 8 8 4.4642 -0.2167 -2.2986 9 7 5.7552 -1.5686 -1.1038 10 6 7.0277 -1.2126 -1.7403 11 6 8.1369 -2.0493 -1.0822 12 1 8.8690 -2.4139 -1.8027 13 6 8.7695 -1.2442 0.0639 14 7 8.7450 -2.0771 1.2706 15 6 9.2071 -1.6995 2.5030 16 1 9.0595 -2.3451 3.3562 17 6 9.8653 -0.4869 2.6559 18 7 9.9259 0.3602 1.6504 19 14 10.6649 -0.0575 4.2885 20 1 12.1022 -0.4286 4.2485 21 1 10.5371 1.4015 4.5337 22 1 9.9911 -0.8040 5.3812 23 6 8.1481 -3.3790 0.9504 24 6 7.3734 -3.1988 -0.3674 25 1 7.3200 -4.1130 -0.9587 26 6 5.9976 -2.5740 -0.0623 27 6 3.3877 -1.0874 0.7982 28 8 2.0327 -0.7224 1.1450 29 1 -0.3634 -1.0276 0.0125 30 1 -0.3634 0.5029 -0.8963 31 1 -0.3634 0.5247 0.8836 32 1 1.3275 -1.4903 -1.5788 33 1 2.3406 -0.0819 -2.0225 34 1 6.9817 -1.4349 -2.8065 35 1 7.2296 -0.1517 -1.5931 36 1 9.7993 -0.9910 -0.1882 37 1 8.1968 -0.3325 0.2338 38 1 10.3861 1.2074 1.7570 39 1 7.4669 -3.6825 1.7452 40 1 8.9308 -4.1269 0.8236 41 1 6.0098 -2.0994 0.9189 42 1 5.2242 -3.3413 -0.0968 43 1 3.7245 -1.9231 1.4117 44 1 4.0529 -0.2328 0.9214 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048901956.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:19 Heat of formation + Delta-G solvation = -52.462164 kcal Electronic energy + Delta-G solvation = -24974.698832 eV Core-core repulsion = 21506.530551 eV Total energy + Delta-G solvation = -3468.168280 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.66140 -39.32460 -37.88800 -35.00279 -32.56812 -32.33449 -31.82197 -30.15982 -29.47530 -26.31628 -25.59056 -25.45709 -23.77754 -22.18151 -21.19491 -20.14615 -19.37201 -19.02858 -17.55418 -16.82114 -16.42097 -15.72241 -15.66765 -15.33592 -14.95155 -14.53880 -14.25678 -13.74113 -13.48260 -13.16682 -13.05356 -12.78317 -12.57918 -12.26088 -12.14702 -12.08281 -11.97863 -11.54539 -11.51442 -11.39345 -10.99323 -10.93182 -10.86418 -10.84277 -10.45957 -10.14170 -10.11011 -9.92512 -9.86091 -9.70958 -9.63233 -8.62645 -8.39221 -6.88365 -5.78222 -3.11267 2.69656 3.10995 3.37460 3.42920 3.45047 3.80247 4.33613 4.45579 4.54707 4.58881 4.78555 4.87404 4.98662 5.07897 5.12578 5.19613 5.28426 5.45036 5.47239 5.51771 5.54130 5.60579 5.63943 5.68545 5.78210 5.82907 5.87340 5.92681 5.93920 5.98776 6.12659 6.23333 6.31778 6.48733 6.52928 6.57507 6.71769 6.75769 7.48274 7.55398 7.70304 7.76644 8.21322 8.26343 9.16678 9.77493 10.41054 11.33574 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017612 B = 0.004447 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.475911 B = 6295.544765 C = 7045.254649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.067 3.933 3 H 0.071 0.929 4 C -0.140 4.140 5 C -0.140 4.140 6 H 0.107 0.893 7 C 0.534 3.466 8 O -0.545 6.545 9 N -0.604 5.604 10 C 0.120 3.880 11 C -0.123 4.123 12 H 0.091 0.909 13 C 0.184 3.816 14 N -0.602 5.602 15 C -0.233 4.233 16 H 0.079 0.921 17 C -0.004 4.004 18 N -0.918 5.918 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.145 3.855 24 C -0.111 4.111 25 H 0.090 0.910 26 C 0.109 3.891 27 C 0.060 3.940 28 O -0.369 6.369 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.253 0.747 39 H 0.038 0.962 40 H 0.021 0.979 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.101 0.899 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.786 -5.874 -6.029 16.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.010 3.990 3 H 0.089 0.911 4 C -0.178 4.178 5 C -0.161 4.161 6 H 0.125 0.875 7 C 0.322 3.678 8 O -0.423 6.423 9 N -0.337 5.337 10 C -0.002 4.002 11 C -0.143 4.143 12 H 0.109 0.891 13 C 0.059 3.941 14 N -0.329 5.329 15 C -0.361 4.361 16 H 0.097 0.903 17 C -0.201 4.201 18 N -0.565 5.565 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.019 3.981 24 C -0.131 4.131 25 H 0.109 0.891 26 C -0.014 4.014 27 C -0.018 4.018 28 O -0.288 6.288 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.119 0.881 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.039 0.961 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.119 0.881 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.914 -5.245 -6.210 16.114 hybrid contribution 0.757 0.229 0.673 1.039 sum -13.157 -5.016 -5.536 15.130 Atomic orbital electron populations 1.21792 0.93133 1.02813 1.02440 1.23035 0.95284 0.95858 0.84829 0.91149 1.23012 0.95191 1.00225 0.99396 1.22628 0.93884 1.02714 0.96913 0.87536 1.19871 0.83371 0.81292 0.83304 1.90655 1.85702 1.33157 1.32784 1.48246 1.06631 1.41627 1.37154 1.21845 0.82095 1.00218 0.96079 1.23158 0.96215 0.95699 0.99180 0.89067 1.21120 0.99021 0.91647 0.82287 1.44210 1.71661 1.10125 1.06886 1.19030 1.29783 1.02397 0.84924 0.90332 1.24816 1.00598 0.96846 0.97806 1.69969 1.46971 1.09314 1.30258 0.86130 0.79564 0.77436 0.82831 1.21577 1.21770 1.20585 1.21163 0.94375 0.89962 0.92645 1.22944 0.93800 0.97848 0.98535 0.89142 1.22214 0.96983 0.90176 0.92004 1.23374 0.85021 1.00976 0.92402 1.89161 1.26830 1.74543 1.38285 0.91813 0.91115 0.91856 0.90242 0.88116 0.92283 0.90837 0.93434 0.93447 0.93666 0.94425 0.96131 0.90077 0.91614 0.88052 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.52 37.16 0.35 -0.96 16 2 C 0.07 0.79 3.92 -25.95 -0.10 0.69 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.14 -1.63 6.21 -25.16 -0.16 -1.79 16 5 C -0.14 -1.76 2.81 -90.20 -0.25 -2.02 16 6 H 0.11 1.13 7.80 -51.93 -0.40 0.72 16 7 C 0.53 8.50 7.06 -10.98 -0.08 8.43 16 8 O -0.54 -10.29 15.59 5.56 0.09 -10.21 16 9 N -0.60 -9.61 3.31 -172.17 -0.57 -10.18 16 10 C 0.12 2.02 6.23 -3.57 -0.02 1.99 16 11 C -0.12 -2.12 4.02 -88.60 -0.36 -2.47 16 12 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 13 C 0.18 4.21 4.76 -3.61 -0.02 4.19 16 14 N -0.60 -14.40 3.37 -171.94 -0.58 -14.98 16 15 C -0.23 -6.23 10.24 -15.06 -0.15 -6.38 16 16 H 0.08 2.03 7.84 -52.48 -0.41 1.62 16 17 C 0.00 -0.11 5.48 -17.43 -0.10 -0.20 16 18 N -0.92 -26.33 10.30 55.49 0.57 -25.76 16 19 Si 0.91 21.67 29.56 -169.99 -5.02 16.65 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.15 2.71 6.37 -3.42 -0.02 2.69 16 24 C -0.11 -1.71 4.19 -88.26 -0.37 -2.08 16 25 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 26 C 0.11 1.59 4.92 -3.29 -0.02 1.57 16 27 C 0.06 0.79 6.19 37.94 0.23 1.02 16 28 O -0.37 -5.08 11.35 -35.23 -0.40 -5.48 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.77 7.87 -51.93 -0.41 0.36 16 33 H 0.10 1.32 6.51 -51.93 -0.34 0.98 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.38 7.44 -51.93 -0.39 1.00 16 36 H 0.05 1.23 7.32 -51.93 -0.38 0.85 16 37 H 0.05 1.23 6.67 -51.93 -0.35 0.89 16 38 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.04 0.67 7.94 -51.93 -0.41 0.26 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 1.36 7.38 -51.93 -0.38 0.97 16 42 H 0.07 0.76 7.55 -51.93 -0.39 0.37 16 43 H 0.10 1.21 7.73 -51.93 -0.40 0.80 16 44 H 0.07 1.02 7.86 -51.93 -0.41 0.61 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -31.15 340.07 -9.03 -40.19 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.19 Total: -0.04 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -1.05 Total: 4.69 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -0.58 Total: -50.92 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.31 Total: -15.69 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.15 -9.03 -40.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048901956.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.273 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds