Wall clock time and date at job start Tue Mar 31 2020 06:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.33022 * 2 1 4 4 C 1.54482 * 110.37383 * 237.75227 * 2 1 3 5 5 C 1.54504 * 104.06129 * 217.18953 * 4 2 1 6 6 H 1.09000 * 110.51418 * 118.64052 * 5 4 2 7 7 C 1.50700 * 110.50959 * 241.35265 * 5 4 2 8 8 O 1.21276 * 120.00183 * 0.02562 * 7 5 4 9 9 N 1.34780 * 119.99988 * 179.97438 * 7 5 4 10 10 C 1.46666 * 125.33720 * 179.97438 * 9 7 5 11 11 C 1.53732 * 107.94251 * 180.54794 * 10 9 7 12 12 H 1.08998 * 112.55911 * 139.71914 * 11 10 9 13 13 C 1.53687 * 109.33990 * 266.25466 * 11 10 9 14 14 N 1.46639 * 108.00961 * 127.55633 * 13 11 10 15 15 C 1.36935 * 125.32976 * 180.81248 * 14 13 11 16 16 H 1.08004 * 120.00028 * 174.01296 * 15 14 13 17 17 C 1.38813 * 120.00203 * 354.01281 * 15 14 13 18 18 N 1.31617 * 119.99454 * 6.94213 * 17 15 14 19 19 Si 1.86794 * 120.00059 * 186.94123 * 17 15 14 20 20 H 1.48497 * 109.47200 * 94.98877 * 19 17 15 21 21 H 1.48502 * 109.47135 * 214.98519 * 19 17 15 22 22 H 1.48497 * 109.47280 * 334.98478 * 19 17 15 23 23 C 1.46750 * 109.34012 * 0.83453 * 14 13 11 24 24 C 1.53925 * 106.71922 * 341.66115 * 23 14 13 25 25 H 1.09000 * 113.01010 * 150.83861 * 24 23 14 26 26 C 1.46777 * 125.33732 * 359.70340 * 9 7 5 27 27 C 1.54484 * 104.06465 * 359.97438 * 5 4 2 28 28 O 1.44422 * 110.37268 * 122.24927 * 2 1 3 29 29 H 1.09004 * 109.47212 * 180.69859 * 1 2 3 30 30 H 1.09005 * 109.47179 * 60.70407 * 1 2 3 31 31 H 1.09003 * 109.47615 * 300.70287 * 1 2 3 32 32 H 1.09001 * 110.50580 * 335.83261 * 4 2 1 33 33 H 1.08992 * 110.51158 * 98.40527 * 4 2 1 34 34 H 1.09006 * 109.77350 * 300.16581 * 10 9 7 35 35 H 1.08995 * 109.77492 * 60.92866 * 10 9 7 36 36 H 1.09001 * 109.75937 * 247.19617 * 13 11 10 37 37 H 1.08997 * 109.76245 * 7.91305 * 13 11 10 38 38 H 0.97004 * 119.99698 * 180.02562 * 18 17 15 39 39 H 1.08994 * 110.00839 * 222.34103 * 23 14 13 40 40 H 1.08995 * 110.00637 * 100.97489 * 23 14 13 41 41 H 1.09005 * 110.02221 * 280.76377 * 26 9 7 42 42 H 1.09000 * 110.03277 * 42.17980 * 26 9 7 43 43 H 1.09005 * 110.37063 * 142.81099 * 27 5 4 44 44 H 1.08999 * 110.37385 * 265.15017 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7727 -1.2248 5 6 3.3178 -1.5049 -0.6875 6 1 3.1956 -2.5844 -0.7758 7 6 4.5525 -1.0500 -1.4219 8 8 4.4642 -0.2167 -2.2986 9 7 5.7552 -1.5686 -1.1038 10 6 7.0277 -1.2126 -1.7403 11 6 8.1369 -2.0493 -1.0822 12 1 8.8690 -2.4139 -1.8027 13 6 8.7695 -1.2442 0.0639 14 7 8.7450 -2.0771 1.2706 15 6 9.2071 -1.6995 2.5030 16 1 9.0595 -2.3451 3.3562 17 6 9.8653 -0.4869 2.6559 18 7 9.9259 0.3602 1.6504 19 14 10.6649 -0.0575 4.2885 20 1 12.1022 -0.4286 4.2485 21 1 10.5371 1.4015 4.5337 22 1 9.9911 -0.8040 5.3812 23 6 8.1481 -3.3790 0.9504 24 6 7.3734 -3.1988 -0.3674 25 1 7.3200 -4.1130 -0.9587 26 6 5.9976 -2.5740 -0.0623 27 6 3.3877 -1.0874 0.7982 28 8 2.0327 -0.7224 1.1450 29 1 -0.3634 -1.0276 0.0125 30 1 -0.3634 0.5029 -0.8963 31 1 -0.3634 0.5247 0.8836 32 1 1.3275 -1.4903 -1.5788 33 1 2.3406 -0.0819 -2.0225 34 1 6.9817 -1.4349 -2.8065 35 1 7.2296 -0.1517 -1.5931 36 1 9.7993 -0.9910 -0.1882 37 1 8.1968 -0.3325 0.2338 38 1 10.3861 1.2074 1.7570 39 1 7.4669 -3.6825 1.7452 40 1 8.9308 -4.1269 0.8236 41 1 6.0098 -2.0994 0.9189 42 1 5.2242 -3.3413 -0.0968 43 1 3.7245 -1.9231 1.4117 44 1 4.0529 -0.2328 0.9214 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048901956.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:18 Heat of formation + Delta-G solvation = -72.910138 kcal Electronic energy + Delta-G solvation = -24975.585522 eV Core-core repulsion = 21506.530551 eV Total energy + Delta-G solvation = -3469.054971 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.88533 -40.55156 -39.19281 -36.61096 -34.20565 -33.43844 -32.93032 -31.55104 -31.11240 -27.63291 -27.10462 -26.74986 -25.23717 -23.40522 -22.19749 -21.78179 -20.78883 -20.23772 -18.95294 -18.50025 -17.66574 -16.92110 -16.83991 -16.54839 -16.37938 -15.97307 -15.63076 -15.48891 -14.74248 -14.56857 -14.23275 -14.10590 -13.69622 -13.57948 -13.39537 -13.29707 -13.12030 -13.05851 -12.93570 -12.73971 -12.67637 -12.39421 -11.97968 -11.89851 -11.87998 -11.83283 -11.80013 -11.53183 -11.34710 -10.96070 -10.88753 -10.67017 -9.70111 -8.85872 -7.86337 -5.19732 1.45247 1.45740 1.46666 1.55426 1.90218 2.49577 2.82179 3.26901 3.32570 3.38858 3.55816 3.66011 3.69608 3.86279 3.93674 3.97284 4.11237 4.19211 4.27928 4.30736 4.40783 4.52673 4.54445 4.59273 4.66713 4.74050 4.81380 4.84934 4.90474 4.94036 4.97690 5.07016 5.07213 5.10874 5.24673 5.26404 5.41308 5.49559 5.63857 5.75280 5.77332 6.21856 6.46082 7.00845 7.11630 7.81557 8.42733 9.24222 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017612 B = 0.004447 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.475911 B = 6295.544765 C = 7045.254649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.060 3.940 3 H 0.054 0.946 4 C -0.136 4.136 5 C -0.131 4.131 6 H 0.142 0.858 7 C 0.529 3.471 8 O -0.581 6.581 9 N -0.606 5.606 10 C 0.124 3.876 11 C -0.112 4.112 12 H 0.114 0.886 13 C 0.198 3.802 14 N -0.623 5.623 15 C -0.237 4.237 16 H 0.087 0.913 17 C -0.065 4.065 18 N -0.951 5.951 19 Si 0.972 3.028 20 H -0.288 1.288 21 H -0.301 1.301 22 H -0.265 1.265 23 C 0.138 3.862 24 C -0.093 4.093 25 H 0.138 0.862 26 C 0.109 3.891 27 C 0.061 3.939 28 O -0.380 6.380 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.005 0.995 37 H 0.002 0.998 38 H 0.244 0.756 39 H 0.051 0.949 40 H 0.031 0.969 41 H 0.054 0.946 42 H 0.112 0.888 43 H 0.119 0.881 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.679 -9.000 -6.226 19.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.002 3.998 3 H 0.072 0.928 4 C -0.174 4.174 5 C -0.152 4.152 6 H 0.160 0.840 7 C 0.319 3.681 8 O -0.462 6.462 9 N -0.338 5.338 10 C 0.001 3.999 11 C -0.132 4.132 12 H 0.132 0.868 13 C 0.072 3.928 14 N -0.349 5.349 15 C -0.366 4.366 16 H 0.105 0.895 17 C -0.258 4.258 18 N -0.600 5.600 19 Si 0.801 3.199 20 H -0.215 1.215 21 H -0.228 1.228 22 H -0.189 1.189 23 C 0.013 3.987 24 C -0.112 4.112 25 H 0.156 0.844 26 C -0.013 4.013 27 C -0.016 4.016 28 O -0.300 6.300 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.126 0.874 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.024 0.976 37 H 0.020 0.980 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.130 0.870 43 H 0.137 0.863 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.825 -8.425 -6.389 19.033 hybrid contribution 1.351 1.224 0.756 1.974 sum -14.474 -7.202 -5.633 17.120 Atomic orbital electron populations 1.21791 0.90784 1.03727 1.03310 1.23197 0.97148 0.94972 0.84443 0.92786 1.23010 0.95397 1.00376 0.98581 1.22682 0.92271 1.04696 0.95542 0.84037 1.20510 0.84156 0.80532 0.82907 1.90640 1.86308 1.34640 1.34597 1.48337 1.06282 1.41921 1.37220 1.21692 0.82738 0.98208 0.97279 1.22993 0.96682 0.95908 0.97615 0.86784 1.20752 0.96337 0.91348 0.84334 1.44506 1.71768 1.12398 1.06270 1.19454 1.28569 1.02129 0.86476 0.89541 1.25613 1.01990 0.97278 1.00932 1.70211 1.48212 1.09387 1.32173 0.85150 0.78543 0.76502 0.79742 1.21517 1.22804 1.18898 1.21414 0.94938 0.87457 0.94919 1.23014 0.92896 0.98657 0.96639 0.84431 1.22281 0.98212 0.90537 0.90223 1.23329 0.84553 1.00343 0.93393 1.89156 1.26755 1.74710 1.39357 0.90784 0.89411 0.91924 0.87400 0.89911 0.90274 0.94370 0.97643 0.97962 0.94705 0.93092 0.95151 0.92738 0.86951 0.86346 0.94591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.52 71.98 0.68 -1.53 16 2 C 0.06 1.34 3.92 31.10 0.12 1.46 16 3 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 4 C -0.14 -2.89 6.21 31.61 0.20 -2.69 16 5 C -0.13 -2.98 2.81 -10.52 -0.03 -3.01 16 6 H 0.14 2.28 7.80 -2.39 -0.02 2.26 16 7 C 0.53 16.31 7.06 87.66 0.62 16.93 16 8 O -0.58 -22.07 15.59 -3.02 -0.05 -22.12 16 9 N -0.61 -18.45 3.31 -817.02 -2.71 -21.15 16 10 C 0.12 4.13 6.23 86.59 0.54 4.67 16 11 C -0.11 -3.76 4.02 -9.49 -0.04 -3.79 16 12 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 13 C 0.20 9.40 4.76 86.58 0.41 9.82 16 14 N -0.62 -30.00 3.37 -697.89 -2.35 -32.36 16 15 C -0.24 -12.81 10.24 84.03 0.86 -11.95 16 16 H 0.09 4.41 7.84 -2.91 -0.02 4.39 16 17 C -0.07 -3.67 5.48 84.86 0.46 -3.20 16 18 N -0.95 -57.46 10.30 21.65 0.22 -57.24 16 19 Si 0.97 45.57 29.56 68.60 2.03 47.60 16 20 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 21 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 22 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 23 C 0.14 4.80 6.37 86.64 0.55 5.36 16 24 C -0.09 -2.51 4.19 -9.26 -0.04 -2.54 16 25 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 26 C 0.11 2.86 4.92 86.72 0.43 3.29 16 27 C 0.06 1.55 6.19 72.49 0.45 2.00 16 28 O -0.38 -9.98 11.35 -148.98 -1.69 -11.67 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.11 1.68 7.87 -2.39 -0.02 1.67 16 33 H 0.08 2.11 6.51 -2.39 -0.02 2.09 16 34 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 35 H 0.04 1.53 7.44 -2.39 -0.02 1.51 16 36 H 0.01 0.29 7.32 -2.39 -0.02 0.28 16 37 H 0.00 0.12 6.67 -2.39 -0.02 0.11 16 38 H 0.24 14.51 8.31 -92.71 -0.77 13.74 16 39 H 0.05 1.66 7.94 -2.39 -0.02 1.64 16 40 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.05 1.74 7.38 -2.38 -0.02 1.73 16 42 H 0.11 1.95 7.55 -2.39 -0.02 1.94 16 43 H 0.12 2.55 7.73 -2.38 -0.02 2.53 16 44 H 0.04 1.12 7.86 -2.39 -0.02 1.10 16 Total: -1.00 -72.43 340.07 1.65 -70.78 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.98 Total: 11.36 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 5.22 Total: 14.81 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -4.83 Total: -110.75 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -1.74 Total: -33.79 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -72.43 1.65 -70.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048901956.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.134 kcal (2) G-P(sol) polarization free energy of solvation -72.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds