Wall clock time and date at job start Tue Mar 31 2020 06:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.42032 * 2 1 4 4 C 1.54477 * 110.37308 * 122.31447 * 2 1 3 5 5 C 1.54507 * 104.06510 * 142.80822 * 4 2 1 6 6 H 1.09005 * 110.51421 * 241.35469 * 5 4 2 7 7 C 1.50702 * 110.51233 * 118.64211 * 5 4 2 8 8 O 1.21276 * 120.00163 * 3.90583 * 7 5 4 9 9 N 1.34778 * 119.99844 * 183.90640 * 7 5 4 10 10 C 1.46761 * 125.33522 * 359.69437 * 9 7 5 11 11 C 1.54159 * 106.58872 * 161.46097 * 10 9 7 12 12 H 1.08988 * 113.23476 * 151.13787 * 11 10 9 13 13 C 1.55517 * 110.00136 * 278.72567 * 11 10 9 14 14 N 1.46662 * 108.14328 * 126.67506 * 13 11 10 15 15 C 1.36935 * 125.33834 * 180.64766 * 14 13 11 16 16 H 1.07996 * 120.00582 * 180.02562 * 15 14 13 17 17 C 1.38819 * 119.99625 * 0.04399 * 15 14 13 18 18 N 1.31621 * 120.00024 * 359.97438 * 17 15 14 19 19 Si 1.86789 * 119.99845 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47275 * 90.00259 * 19 17 15 21 21 H 1.48502 * 109.47206 * 210.00117 * 19 17 15 22 22 H 1.48498 * 109.47348 * 330.00027 * 19 17 15 23 23 C 1.46761 * 109.33035 * 0.68883 * 14 13 11 24 24 C 1.53980 * 106.67905 * 341.55631 * 23 14 13 25 25 H 1.09000 * 112.80434 * 151.34048 * 24 23 14 26 26 C 1.46656 * 125.33521 * 180.02562 * 9 7 5 27 27 C 1.54483 * 104.06211 * 359.97438 * 5 4 2 28 28 O 1.44428 * 104.89902 * 335.96812 * 27 5 4 29 29 H 1.09008 * 109.47018 * 297.68209 * 1 2 3 30 30 H 1.08994 * 109.47454 * 57.68299 * 1 2 3 31 31 H 1.09000 * 109.47283 * 177.68871 * 1 2 3 32 32 H 1.09000 * 110.51486 * 24.16264 * 4 2 1 33 33 H 1.09000 * 110.62726 * 261.50882 * 4 2 1 34 34 H 1.08997 * 110.01623 * 280.88515 * 10 9 7 35 35 H 1.09000 * 110.01707 * 42.27206 * 10 9 7 36 36 H 1.08998 * 109.70179 * 6.98440 * 13 11 10 37 37 H 1.08993 * 109.67688 * 246.35267 * 13 11 10 38 38 H 0.96994 * 119.99971 * 180.02562 * 18 17 15 39 39 H 1.09000 * 110.01838 * 222.25305 * 23 14 13 40 40 H 1.09001 * 110.02171 * 100.86055 * 23 14 13 41 41 H 1.09002 * 109.76804 * 300.31783 * 26 9 7 42 42 H 1.09004 * 109.77030 * 61.03953 * 26 9 7 43 43 H 1.09002 * 110.37322 * 94.85326 * 27 5 4 44 44 H 1.08999 * 110.37312 * 217.08002 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0678 -0.7741 1.2239 5 6 3.3177 -1.5058 0.6858 6 1 3.1955 -2.5854 0.7730 7 6 4.5526 -1.0518 1.4207 8 8 4.4560 -0.2731 2.3454 9 7 5.7643 -1.5110 1.0502 10 6 6.0155 -2.4572 -0.0432 11 6 7.5087 -2.3272 -0.4035 12 1 7.9364 -3.2469 -0.8024 13 6 7.7267 -1.1002 -1.3338 14 7 8.7656 -0.2539 -0.7377 15 6 9.2232 0.9257 -1.2613 16 1 9.9945 1.4811 -0.7485 17 6 8.6954 1.4079 -2.4513 18 7 7.7555 0.7310 -3.0764 19 14 9.3191 3.0173 -3.1653 20 1 10.4638 2.7462 -4.0716 21 1 8.2287 3.6759 -3.9284 22 1 9.7608 3.9095 -2.0634 23 6 9.2386 -0.8699 0.5076 24 6 8.1624 -1.8846 0.9354 25 1 8.5710 -2.7186 1.5059 26 6 7.0378 -1.1489 1.6809 27 6 3.3869 -1.0876 -0.7998 28 8 2.0327 -0.7252 -1.1470 29 1 -0.3633 0.4775 0.9101 30 1 -0.3634 0.5493 -0.8684 31 1 -0.3634 -1.0268 -0.0414 32 1 1.3276 -1.4920 1.5772 33 1 2.3426 -0.0858 2.0231 34 1 5.7951 -3.4731 0.2845 35 1 5.4008 -2.2016 -0.9064 36 1 6.7979 -0.5366 -1.4222 37 1 8.0474 -1.4389 -2.3188 38 1 7.3870 1.0677 -3.9080 39 1 9.3604 -0.1083 1.2778 40 1 10.1857 -1.3811 0.3348 41 1 7.1915 -0.0722 1.6097 42 1 7.0298 -1.4515 2.7281 43 1 4.0519 -0.2328 -0.9228 44 1 3.7256 -1.9223 -1.4135 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048901959.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:28 Heat of formation + Delta-G solvation = -49.914849 kcal Electronic energy + Delta-G solvation = -25259.790788 eV Core-core repulsion = 21791.732968 eV Total energy + Delta-G solvation = -3468.057820 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.61600 -39.20095 -37.78445 -34.98035 -32.58532 -32.24573 -31.61845 -30.11993 -29.47368 -26.28599 -25.65912 -25.33258 -23.68350 -22.13599 -21.10758 -20.05877 -19.46390 -18.97906 -17.47869 -16.81103 -16.19671 -15.95631 -15.45384 -15.36080 -14.71370 -14.63326 -14.20627 -13.72166 -13.19734 -13.15135 -13.01297 -12.84164 -12.48257 -12.24119 -12.10793 -11.99792 -11.97023 -11.60621 -11.35777 -11.28870 -10.93933 -10.91394 -10.81342 -10.78347 -10.40125 -10.14309 -10.11586 -9.86520 -9.74879 -9.67381 -9.58733 -8.63639 -8.33878 -6.86273 -5.75486 -3.08487 2.76512 3.16407 3.38838 3.44399 3.46072 3.89820 4.40785 4.47645 4.61893 4.67077 4.79029 4.96416 5.04004 5.17862 5.20490 5.23477 5.34652 5.42707 5.48825 5.51373 5.62036 5.64847 5.68688 5.70862 5.82756 5.91815 5.95466 6.01089 6.02145 6.06801 6.16294 6.18407 6.29847 6.47959 6.52878 6.64414 6.78973 6.82616 7.51374 7.52068 7.75171 7.76943 8.23158 8.32980 9.19545 9.79667 10.43039 11.36313 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014698 B = 0.005366 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.585894 B = 5217.272444 C = 6342.418444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.067 3.933 3 H 0.071 0.929 4 C -0.140 4.140 5 C -0.140 4.140 6 H 0.106 0.894 7 C 0.536 3.464 8 O -0.544 6.544 9 N -0.602 5.602 10 C 0.105 3.895 11 C -0.127 4.127 12 H 0.094 0.906 13 C 0.189 3.811 14 N -0.602 5.602 15 C -0.229 4.229 16 H 0.078 0.922 17 C -0.006 4.006 18 N -0.922 5.922 19 Si 0.912 3.088 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.145 3.855 24 C -0.112 4.112 25 H 0.088 0.912 26 C 0.122 3.878 27 C 0.057 3.943 28 O -0.369 6.369 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.049 0.951 37 H 0.045 0.955 38 H 0.253 0.747 39 H 0.038 0.962 40 H 0.020 0.980 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.411 -8.585 6.970 14.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.009 3.991 3 H 0.089 0.911 4 C -0.178 4.178 5 C -0.162 4.162 6 H 0.124 0.876 7 C 0.324 3.676 8 O -0.422 6.422 9 N -0.334 5.334 10 C -0.018 4.018 11 C -0.146 4.146 12 H 0.112 0.888 13 C 0.064 3.936 14 N -0.328 5.328 15 C -0.357 4.357 16 H 0.096 0.904 17 C -0.202 4.202 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.018 3.982 24 C -0.132 4.132 25 H 0.107 0.893 26 C 0.000 4.000 27 C -0.020 4.020 28 O -0.288 6.288 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.038 0.962 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.697 -8.033 7.101 14.456 hybrid contribution 0.574 0.754 -0.308 0.996 sum -9.123 -7.279 6.792 13.504 Atomic orbital electron populations 1.21783 0.93186 1.02763 1.02388 1.23083 0.95226 0.95942 0.84805 0.91070 1.22999 0.95174 1.00212 0.99377 1.22639 0.93855 1.02619 0.97048 0.87550 1.19873 0.83349 0.80575 0.83803 1.90652 1.85892 1.35228 1.30444 1.48120 1.06039 1.45308 1.33968 1.22182 0.97941 0.91883 0.89795 1.23583 0.92531 1.01576 0.96952 0.88753 1.21351 0.93148 0.86490 0.92629 1.44169 1.43505 1.23181 1.21976 1.19038 1.16749 0.96133 1.03814 0.90397 1.24776 0.98742 0.98993 0.97710 1.69927 1.29794 1.38846 1.18372 0.86121 0.77730 0.83017 0.78924 1.21563 1.21658 1.20700 1.21233 0.93856 0.93271 0.89832 1.22866 0.96071 0.98255 0.95975 0.89348 1.21796 0.81780 1.00869 0.95559 1.23459 0.85144 1.01211 0.92203 1.89197 1.26802 1.74471 1.38318 0.91169 0.91869 0.91836 0.90289 0.88174 0.92075 0.90220 0.93259 0.93722 0.93703 0.94420 0.96215 0.90579 0.92392 0.90932 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.52 37.16 0.35 -1.09 16 2 C 0.07 0.87 3.93 -25.96 -0.10 0.76 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.14 -1.76 6.21 -25.17 -0.16 -1.92 16 5 C -0.14 -1.89 2.99 -90.20 -0.27 -2.16 16 6 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 7 C 0.54 9.02 7.09 -10.98 -0.08 8.95 16 8 O -0.54 -10.84 15.60 5.56 0.09 -10.75 16 9 N -0.60 -9.88 3.31 -172.22 -0.57 -10.45 16 10 C 0.11 1.50 5.75 -3.29 -0.02 1.48 16 11 C -0.13 -2.09 4.17 -87.39 -0.36 -2.45 16 12 H 0.09 1.37 8.14 -51.94 -0.42 0.95 16 13 C 0.19 4.27 4.86 -2.62 -0.01 4.26 16 14 N -0.60 -14.80 3.38 -170.72 -0.58 -15.37 16 15 C -0.23 -6.28 10.25 -15.06 -0.15 -6.44 16 16 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 17 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 18 N -0.92 -26.42 10.25 55.49 0.57 -25.85 16 19 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.14 2.85 6.40 -3.39 -0.02 2.83 16 24 C -0.11 -1.80 4.03 -88.47 -0.36 -2.16 16 25 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 26 C 0.12 2.09 6.23 -3.61 -0.02 2.06 16 27 C 0.06 0.83 5.72 37.94 0.22 1.04 16 28 O -0.37 -5.54 11.37 -35.23 -0.40 -5.94 16 29 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 33 H 0.10 1.42 6.51 -51.93 -0.34 1.08 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.14 4.75 -51.93 -0.25 0.89 16 36 H 0.05 1.26 6.80 -51.93 -0.35 0.90 16 37 H 0.04 1.13 7.45 -51.93 -0.39 0.75 16 38 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.04 0.74 7.79 -51.93 -0.40 0.34 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 1.55 7.48 -51.93 -0.39 1.16 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 1.26 7.86 -51.93 -0.41 0.85 16 44 H 0.10 1.31 6.68 -51.93 -0.35 0.96 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -31.87 338.14 -8.96 -40.83 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -7.05 Total: 0.46 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -1.08 Total: 4.92 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.58 Total: -51.68 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.31 Total: -16.69 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.87 -8.96 -40.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048901959.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.088 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds