Wall clock time and date at job start Tue Mar 31 2020 06:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.42032 * 2 1 4 4 C 1.54477 * 110.37308 * 122.31447 * 2 1 3 5 5 C 1.54507 * 104.06510 * 142.80822 * 4 2 1 6 6 H 1.09005 * 110.51421 * 241.35469 * 5 4 2 7 7 C 1.50702 * 110.51233 * 118.64211 * 5 4 2 8 8 O 1.21276 * 120.00163 * 3.90583 * 7 5 4 9 9 N 1.34778 * 119.99844 * 183.90640 * 7 5 4 10 10 C 1.46761 * 125.33522 * 359.69437 * 9 7 5 11 11 C 1.54159 * 106.58872 * 161.46097 * 10 9 7 12 12 H 1.08988 * 113.23476 * 151.13787 * 11 10 9 13 13 C 1.55517 * 110.00136 * 278.72567 * 11 10 9 14 14 N 1.46662 * 108.14328 * 126.67506 * 13 11 10 15 15 C 1.36935 * 125.33834 * 180.64766 * 14 13 11 16 16 H 1.07996 * 120.00582 * 180.02562 * 15 14 13 17 17 C 1.38819 * 119.99625 * 0.04399 * 15 14 13 18 18 N 1.31621 * 120.00024 * 359.97438 * 17 15 14 19 19 Si 1.86789 * 119.99845 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47275 * 90.00259 * 19 17 15 21 21 H 1.48502 * 109.47206 * 210.00117 * 19 17 15 22 22 H 1.48498 * 109.47348 * 330.00027 * 19 17 15 23 23 C 1.46761 * 109.33035 * 0.68883 * 14 13 11 24 24 C 1.53980 * 106.67905 * 341.55631 * 23 14 13 25 25 H 1.09000 * 112.80434 * 151.34048 * 24 23 14 26 26 C 1.46656 * 125.33521 * 180.02562 * 9 7 5 27 27 C 1.54483 * 104.06211 * 359.97438 * 5 4 2 28 28 O 1.44428 * 104.89902 * 335.96812 * 27 5 4 29 29 H 1.09008 * 109.47018 * 297.68209 * 1 2 3 30 30 H 1.08994 * 109.47454 * 57.68299 * 1 2 3 31 31 H 1.09000 * 109.47283 * 177.68871 * 1 2 3 32 32 H 1.09000 * 110.51486 * 24.16264 * 4 2 1 33 33 H 1.09000 * 110.62726 * 261.50882 * 4 2 1 34 34 H 1.08997 * 110.01623 * 280.88515 * 10 9 7 35 35 H 1.09000 * 110.01707 * 42.27206 * 10 9 7 36 36 H 1.08998 * 109.70179 * 6.98440 * 13 11 10 37 37 H 1.08993 * 109.67688 * 246.35267 * 13 11 10 38 38 H 0.96994 * 119.99971 * 180.02562 * 18 17 15 39 39 H 1.09000 * 110.01838 * 222.25305 * 23 14 13 40 40 H 1.09001 * 110.02171 * 100.86055 * 23 14 13 41 41 H 1.09002 * 109.76804 * 300.31783 * 26 9 7 42 42 H 1.09004 * 109.77030 * 61.03953 * 26 9 7 43 43 H 1.09002 * 110.37322 * 94.85326 * 27 5 4 44 44 H 1.08999 * 110.37312 * 217.08002 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0678 -0.7741 1.2239 5 6 3.3177 -1.5058 0.6858 6 1 3.1955 -2.5854 0.7730 7 6 4.5526 -1.0518 1.4207 8 8 4.4560 -0.2731 2.3454 9 7 5.7643 -1.5110 1.0502 10 6 6.0155 -2.4572 -0.0432 11 6 7.5087 -2.3272 -0.4035 12 1 7.9364 -3.2469 -0.8024 13 6 7.7267 -1.1002 -1.3338 14 7 8.7656 -0.2539 -0.7377 15 6 9.2232 0.9257 -1.2613 16 1 9.9945 1.4811 -0.7485 17 6 8.6954 1.4079 -2.4513 18 7 7.7555 0.7310 -3.0764 19 14 9.3191 3.0173 -3.1653 20 1 10.4638 2.7462 -4.0716 21 1 8.2287 3.6759 -3.9284 22 1 9.7608 3.9095 -2.0634 23 6 9.2386 -0.8699 0.5076 24 6 8.1624 -1.8846 0.9354 25 1 8.5710 -2.7186 1.5059 26 6 7.0378 -1.1489 1.6809 27 6 3.3869 -1.0876 -0.7998 28 8 2.0327 -0.7252 -1.1470 29 1 -0.3633 0.4775 0.9101 30 1 -0.3634 0.5493 -0.8684 31 1 -0.3634 -1.0268 -0.0414 32 1 1.3276 -1.4920 1.5772 33 1 2.3426 -0.0858 2.0231 34 1 5.7951 -3.4731 0.2845 35 1 5.4008 -2.2016 -0.9064 36 1 6.7979 -0.5366 -1.4222 37 1 8.0474 -1.4389 -2.3188 38 1 7.3870 1.0677 -3.9080 39 1 9.3604 -0.1083 1.2778 40 1 10.1857 -1.3811 0.3348 41 1 7.1915 -0.0722 1.6097 42 1 7.0298 -1.4515 2.7281 43 1 4.0519 -0.2328 -0.9228 44 1 3.7256 -1.9223 -1.4135 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048901959.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:27 Heat of formation + Delta-G solvation = -71.277670 kcal Electronic energy + Delta-G solvation = -25260.717150 eV Core-core repulsion = 21791.732968 eV Total energy + Delta-G solvation = -3468.984182 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.88785 -40.48015 -39.15581 -36.62159 -34.27143 -33.38237 -32.82993 -31.61914 -31.06689 -27.60697 -27.30788 -26.65349 -25.19643 -23.42273 -22.19295 -21.73135 -20.87974 -20.22864 -18.92554 -18.56108 -17.47722 -17.20615 -16.76303 -16.58705 -16.47550 -15.82837 -15.67742 -15.50765 -14.62665 -14.47756 -14.20502 -14.17870 -13.71228 -13.60583 -13.45442 -13.34286 -13.12898 -12.99237 -12.93066 -12.74505 -12.71842 -12.37637 -12.03966 -11.91317 -11.87590 -11.82850 -11.75029 -11.57252 -11.28903 -10.96673 -10.90076 -10.69698 -9.65407 -8.87017 -7.87485 -5.20952 1.41919 1.43353 1.46179 1.51425 1.93306 2.46645 2.82120 3.28824 3.31993 3.40049 3.51139 3.65078 3.73707 3.82413 3.92712 3.95555 4.11302 4.18124 4.25694 4.32439 4.38825 4.47132 4.59222 4.64012 4.68891 4.76954 4.80415 4.84998 4.90381 4.93485 4.96936 5.00635 5.05631 5.06599 5.24918 5.26203 5.40072 5.45842 5.68149 5.74337 5.79471 6.21410 6.47357 7.02606 7.11685 7.80284 8.40400 9.21952 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014698 B = 0.005366 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.585894 B = 5217.272444 C = 6342.418444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.058 3.942 3 H 0.049 0.951 4 C -0.135 4.135 5 C -0.130 4.130 6 H 0.145 0.855 7 C 0.528 3.472 8 O -0.584 6.584 9 N -0.606 5.606 10 C 0.106 3.894 11 C -0.114 4.114 12 H 0.129 0.871 13 C 0.196 3.804 14 N -0.626 5.626 15 C -0.243 4.243 16 H 0.078 0.922 17 C -0.062 4.062 18 N -0.945 5.945 19 Si 0.971 3.029 20 H -0.282 1.282 21 H -0.297 1.297 22 H -0.274 1.274 23 C 0.136 3.864 24 C -0.093 4.093 25 H 0.138 0.862 26 C 0.122 3.878 27 C 0.061 3.939 28 O -0.381 6.381 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.009 0.991 37 H 0.008 0.992 38 H 0.245 0.755 39 H 0.031 0.969 40 H 0.033 0.967 41 H 0.029 0.971 42 H 0.078 0.922 43 H 0.029 0.971 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.032 -11.254 8.098 17.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.001 3.999 3 H 0.067 0.933 4 C -0.172 4.172 5 C -0.151 4.151 6 H 0.163 0.837 7 C 0.318 3.682 8 O -0.465 6.465 9 N -0.337 5.337 10 C -0.016 4.016 11 C -0.133 4.133 12 H 0.147 0.853 13 C 0.071 3.929 14 N -0.352 5.352 15 C -0.372 4.372 16 H 0.095 0.905 17 C -0.255 4.255 18 N -0.594 5.594 19 Si 0.800 3.200 20 H -0.209 1.209 21 H -0.223 1.223 22 H -0.199 1.199 23 C 0.011 3.989 24 C -0.112 4.112 25 H 0.156 0.844 26 C 0.000 4.000 27 C -0.016 4.016 28 O -0.300 6.300 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.129 0.871 33 H 0.099 0.901 34 H 0.131 0.869 35 H 0.094 0.906 36 H 0.027 0.973 37 H 0.026 0.974 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.047 0.953 42 H 0.096 0.904 43 H 0.048 0.952 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.294 -10.727 8.242 16.999 hybrid contribution 0.827 1.658 -0.646 1.962 sum -9.467 -9.069 7.595 15.151 Atomic orbital electron populations 1.21779 0.90546 1.03816 1.03315 1.23253 0.97310 0.94805 0.84545 0.93294 1.22994 0.95501 1.00374 0.98370 1.22688 0.92367 1.04776 0.95281 0.83712 1.20502 0.84340 0.79886 0.83483 1.90630 1.86568 1.36873 1.32426 1.48262 1.05726 1.45514 1.34216 1.22352 0.96135 0.93762 0.89306 1.23515 0.94648 0.99725 0.95442 0.85347 1.21101 0.90652 0.88268 0.92859 1.44486 1.43998 1.22937 1.23759 1.19388 1.16473 0.97435 1.03877 0.90454 1.25542 0.99425 1.02089 0.98442 1.70149 1.30909 1.40029 1.18327 0.85188 0.77001 0.79638 0.78209 1.20853 1.22324 1.19870 1.21461 0.95638 0.94063 0.87786 1.22879 0.94212 0.98182 0.95923 0.84380 1.21728 0.82820 0.98370 0.97124 1.23360 0.84464 1.00148 0.93664 1.89189 1.26688 1.74619 1.39515 0.89326 0.92022 0.90550 0.87125 0.90088 0.86940 0.90572 0.97295 0.97407 0.94522 0.95033 0.94899 0.95252 0.90381 0.95247 0.86055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.52 71.98 0.68 -1.82 16 2 C 0.06 1.48 3.93 31.10 0.12 1.61 16 3 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 4 C -0.13 -3.19 6.21 31.61 0.20 -3.00 16 5 C -0.13 -3.27 2.99 -10.52 -0.03 -3.31 16 6 H 0.15 2.57 8.14 -2.38 -0.02 2.55 16 7 C 0.53 17.47 7.09 87.66 0.62 18.09 16 8 O -0.58 -23.63 15.60 -3.02 -0.05 -23.67 16 9 N -0.61 -19.05 3.31 -817.18 -2.70 -21.75 16 10 C 0.11 2.73 5.75 86.72 0.50 3.22 16 11 C -0.11 -3.47 4.17 -8.70 -0.04 -3.51 16 12 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 13 C 0.20 9.10 4.86 87.22 0.42 9.52 16 14 N -0.63 -31.50 3.38 -694.04 -2.34 -33.85 16 15 C -0.24 -13.73 10.25 84.04 0.86 -12.87 16 16 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 17 C -0.06 -3.54 5.48 84.86 0.47 -3.08 16 18 N -0.95 -56.70 10.25 21.65 0.22 -56.48 16 19 Si 0.97 46.75 29.55 68.60 2.03 48.78 16 20 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 21 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 22 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 23 C 0.14 5.25 6.40 86.66 0.55 5.81 16 24 C -0.09 -2.72 4.03 -9.40 -0.04 -2.75 16 25 H 0.14 2.84 8.14 -2.39 -0.02 2.82 16 26 C 0.12 4.04 6.23 86.58 0.54 4.58 16 27 C 0.06 1.76 5.72 72.49 0.41 2.17 16 28 O -0.38 -11.28 11.37 -148.98 -1.69 -12.98 16 29 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.11 1.93 7.87 -2.39 -0.02 1.91 16 33 H 0.08 2.28 6.51 -2.39 -0.02 2.27 16 34 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.08 2.04 4.75 -2.39 -0.01 2.03 16 36 H 0.01 0.48 6.80 -2.39 -0.02 0.46 16 37 H 0.01 0.41 7.45 -2.39 -0.02 0.39 16 38 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 39 H 0.03 1.25 7.79 -2.39 -0.02 1.23 16 40 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.03 1.23 7.48 -2.39 -0.02 1.21 16 42 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 43 H 0.03 1.09 7.86 -2.39 -0.02 1.07 16 44 H 0.12 2.96 6.68 -2.39 -0.02 2.95 16 Total: -1.00 -74.98 338.14 1.72 -73.26 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.98 Total: 12.01 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 5.28 Total: 14.68 kcal Atomic # 7 Polarization: -107.26 SS G_CDS: -4.82 Total: -112.08 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -1.74 Total: -36.65 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -74.98 1.72 -73.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048901959.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.980 kcal (2) G-P(sol) polarization free energy of solvation -74.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds