Wall clock time and date at job start Tue Mar 31 2020 06:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.45129 * 2 1 4 4 C 1.54483 * 110.62616 * 122.67950 * 2 1 3 5 5 O 1.44427 * 104.79790 * 142.68509 * 4 2 1 6 6 C 1.44422 * 105.27495 * 319.48514 * 5 4 2 7 7 H 1.09002 * 110.46950 * 281.63144 * 6 5 4 8 8 C 1.50703 * 110.36873 * 159.34536 * 6 5 4 9 9 O 1.21284 * 120.00317 * 359.62511 * 8 6 5 10 10 N 1.34779 * 120.00101 * 179.61841 * 8 6 5 11 11 C 1.46776 * 125.33520 * 0.02562 * 10 8 6 12 12 C 1.53971 * 106.62673 * 198.51561 * 11 10 8 13 13 H 1.09002 * 113.01755 * 94.27673 * 12 11 10 14 14 C 1.53926 * 109.91794 * 221.55636 * 12 11 10 15 15 N 1.47621 * 106.28305 * 80.85137 * 14 12 11 16 16 C 1.36936 * 125.43814 * 198.68628 * 15 14 12 17 17 H 1.08002 * 119.99503 * 180.83715 * 16 15 14 18 18 C 1.38811 * 120.00226 * 0.83460 * 16 15 14 19 19 N 1.31614 * 120.00009 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00001 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47043 * 60.00002 * 20 18 16 22 22 H 1.48496 * 109.47232 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47154 * 300.00420 * 20 18 16 24 24 C 1.46632 * 109.22512 * 19.40863 * 15 14 12 25 25 C 1.53696 * 108.01255 * 358.47815 * 24 15 14 26 26 H 1.09004 * 113.05609 * 106.18489 * 25 24 15 27 27 C 1.46663 * 125.34360 * 179.97438 * 10 8 6 28 28 C 1.54473 * 104.80372 * 40.51885 * 6 5 4 29 29 H 1.09005 * 109.46868 * 182.60301 * 1 2 3 30 30 H 1.08992 * 109.47308 * 302.60661 * 1 2 3 31 31 H 1.09000 * 109.46931 * 62.61399 * 1 2 3 32 32 H 1.08999 * 110.37358 * 261.51322 * 4 2 1 33 33 H 1.08998 * 110.37191 * 23.74647 * 4 2 1 34 34 H 1.09003 * 110.03209 * 79.22309 * 11 10 8 35 35 H 1.08996 * 110.02884 * 317.80292 * 11 10 8 36 36 H 1.08995 * 110.01213 * 201.20095 * 14 12 11 37 37 H 1.08999 * 110.00929 * 322.56835 * 14 12 11 38 38 H 0.97005 * 120.00075 * 179.97438 * 19 18 16 39 39 H 1.08994 * 109.76271 * 238.83852 * 24 15 14 40 40 H 1.09005 * 109.76893 * 118.12120 * 24 15 14 41 41 H 1.09013 * 109.76822 * 59.83729 * 27 10 8 42 42 H 1.08998 * 109.77415 * 299.08915 * 27 10 8 43 43 H 1.09001 * 110.51764 * 94.66202 * 28 6 5 44 44 H 1.09003 * 110.50949 * 217.37497 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0742 -0.7806 1.2169 5 8 3.2436 -1.4683 0.7212 6 6 2.8787 -1.9393 -0.5944 7 1 2.2618 -2.8350 -0.5211 8 6 4.1132 -2.2193 -1.4123 9 8 5.2123 -2.0326 -0.9348 10 7 3.9958 -2.6774 -2.6744 11 6 2.7291 -2.9435 -3.3665 12 6 3.0609 -3.8670 -4.5530 13 1 2.9311 -4.9238 -4.3199 14 6 2.2723 -3.4243 -5.7986 15 7 3.0186 -2.2911 -6.3799 16 6 2.5107 -1.3744 -7.2614 17 1 3.1416 -0.5853 -7.6430 18 6 1.1852 -1.4596 -7.6644 19 7 0.4163 -2.4210 -7.1990 20 14 0.4922 -0.2087 -8.8663 21 1 1.2580 -0.2664 -10.1373 22 1 -0.9356 -0.5172 -9.1336 23 1 0.6032 1.1525 -8.2830 24 6 4.3961 -2.3117 -5.8777 25 6 4.5283 -3.4911 -4.9010 26 1 5.0905 -4.3278 -5.3157 27 6 5.1136 -2.9872 -3.5719 28 6 2.0715 -0.7798 -1.2190 29 1 -0.3633 -1.0267 0.0467 30 1 -0.3633 0.5537 0.8656 31 1 -0.3633 0.4727 -0.9125 32 1 2.3490 -0.0931 2.0168 33 1 1.3326 -1.4966 1.5710 34 1 2.2984 -2.0101 -3.7290 35 1 2.0318 -3.4394 -2.6913 36 1 2.1988 -4.2499 -6.5064 37 1 1.2757 -3.0904 -5.5098 38 1 -0.5102 -2.4803 -7.4803 39 1 4.6133 -1.3779 -5.3592 40 1 5.0896 -2.4418 -6.7085 41 1 5.7393 -3.7615 -3.1278 42 1 5.7062 -2.0892 -3.7464 43 1 2.7201 -0.1440 -1.8217 44 1 1.2492 -1.1674 -1.8204 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048946824.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:33 Heat of formation + Delta-G solvation = -50.040798 kcal Electronic energy + Delta-G solvation = -25066.606169 eV Core-core repulsion = 21598.542887 eV Total energy + Delta-G solvation = -3468.063282 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.58117 -39.34631 -37.76085 -34.96844 -33.65983 -32.43801 -30.80403 -30.03417 -29.20965 -26.43485 -25.66128 -25.49767 -24.04093 -22.41859 -20.63352 -20.10151 -19.42048 -19.31626 -17.41284 -16.83874 -16.32344 -15.96449 -15.46315 -15.24588 -14.75072 -14.55901 -14.16560 -13.95585 -13.68143 -13.21410 -13.06147 -12.83340 -12.80454 -12.39374 -12.15203 -11.94321 -11.69467 -11.52132 -11.51602 -11.31482 -11.01686 -10.96675 -10.84583 -10.79821 -10.41342 -10.21419 -10.08324 -10.02980 -9.88655 -9.66884 -9.44721 -8.70093 -8.37568 -6.91002 -5.75707 -3.14165 2.73739 2.91825 3.35770 3.40806 3.41384 3.96388 4.30570 4.42711 4.54850 4.67207 4.73195 4.88545 5.00179 5.00906 5.12111 5.23289 5.29791 5.38930 5.42759 5.48986 5.51768 5.61582 5.63905 5.68553 5.71071 5.83686 5.90172 5.92018 5.96344 6.06336 6.14071 6.23245 6.34320 6.42615 6.60664 6.65540 6.67821 6.80534 7.35660 7.54912 7.69970 7.73373 8.23684 8.32265 9.14216 9.75212 10.38823 11.30881 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015237 B = 0.005038 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.186362 B = 5556.601354 C = 6821.778534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 H 0.085 0.915 4 C 0.046 3.954 5 O -0.347 6.347 6 C 0.064 3.936 7 H 0.093 0.907 8 C 0.532 3.468 9 O -0.532 6.532 10 N -0.607 5.607 11 C 0.109 3.891 12 C -0.122 4.122 13 H 0.087 0.913 14 C 0.169 3.831 15 N -0.601 5.601 16 C -0.224 4.224 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.924 5.924 20 Si 0.913 3.087 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.143 3.857 25 C -0.109 4.109 26 H 0.096 0.904 27 C 0.121 3.879 28 C -0.141 4.141 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.022 0.978 37 H 0.099 0.901 38 H 0.253 0.747 39 H 0.026 0.974 40 H 0.022 0.978 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.109 -0.490 12.616 12.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 H 0.104 0.896 4 C -0.031 4.031 5 O -0.265 6.265 6 C 0.003 3.997 7 H 0.110 0.890 8 C 0.319 3.681 9 O -0.409 6.409 10 N -0.341 5.341 11 C -0.013 4.013 12 C -0.143 4.143 13 H 0.105 0.895 14 C 0.044 3.956 15 N -0.328 5.328 16 C -0.352 4.352 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.572 5.572 20 Si 0.743 3.257 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.212 1.212 24 C 0.017 3.983 25 C -0.128 4.128 26 H 0.114 0.886 27 C -0.001 4.001 28 C -0.179 4.179 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.040 0.960 37 H 0.117 0.883 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.040 0.960 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.711 -0.322 12.964 12.988 hybrid contribution -0.581 0.581 -0.876 1.201 sum 0.131 0.259 12.089 12.092 Atomic orbital electron populations 1.21824 0.93654 1.02286 1.02380 1.22533 0.96817 1.00589 0.94485 0.89646 1.23588 0.87864 0.95081 0.96565 1.89246 1.34858 1.73765 1.28612 1.22759 0.93715 0.98604 0.84583 0.88966 1.19767 0.90301 0.77382 0.80618 1.90696 1.27784 1.51964 1.70417 1.48231 1.09081 1.64663 1.12169 1.22233 0.85086 1.00537 0.93470 1.23237 0.95712 0.98285 0.97036 0.89481 1.21570 0.96305 0.89318 0.88407 1.44436 1.05402 1.30585 1.52350 1.19019 0.94055 1.04839 1.17265 0.90517 1.24748 0.96406 0.98663 1.00552 1.69818 1.06798 1.33282 1.47336 0.86180 0.78024 0.80616 0.80848 1.21194 1.21546 1.21186 1.21204 0.88707 0.94279 0.94151 1.22782 0.96714 0.99009 0.94293 0.88625 1.21794 0.88883 1.00180 0.89276 1.23023 1.00285 0.96340 0.98209 0.92222 0.92365 0.91754 0.88824 0.91904 0.89804 0.91713 0.96024 0.88281 0.93632 0.95636 0.95990 0.91968 0.91368 0.90020 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.97 37.16 0.33 -0.89 16 2 C -0.13 -1.29 3.71 -89.05 -0.33 -1.62 16 3 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.05 0.49 7.19 37.94 0.27 0.76 16 5 O -0.35 -5.24 10.91 -54.45 -0.59 -5.83 16 6 C 0.06 0.91 3.02 -27.11 -0.08 0.82 16 7 H 0.09 1.11 7.78 -51.93 -0.40 0.71 16 8 C 0.53 9.14 7.13 -10.98 -0.08 9.06 16 9 O -0.53 -11.07 16.86 -13.66 -0.23 -11.30 16 10 N -0.61 -9.82 3.31 -172.29 -0.57 -10.39 16 11 C 0.11 1.71 4.95 -3.39 -0.02 1.69 16 12 C -0.12 -2.06 4.12 -88.35 -0.36 -2.42 16 13 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 14 C 0.17 3.70 4.94 -2.95 -0.01 3.69 16 15 N -0.60 -14.35 3.39 -171.23 -0.58 -14.94 16 16 C -0.22 -5.93 10.25 -15.06 -0.15 -6.08 16 17 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 18 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 19 N -0.92 -25.29 10.15 55.49 0.56 -24.72 16 20 Si 0.91 21.24 29.55 -169.99 -5.02 16.21 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.14 2.83 6.60 -3.61 -0.02 2.81 16 25 C -0.11 -1.77 4.01 -88.60 -0.36 -2.12 16 26 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 27 C 0.12 1.91 6.23 -3.58 -0.02 1.89 16 28 C -0.14 -1.76 5.26 -25.17 -0.13 -1.89 16 29 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.56 7.83 -51.93 -0.41 0.15 16 34 H 0.08 1.51 7.38 -51.93 -0.38 1.12 16 35 H 0.06 0.86 7.55 -51.93 -0.39 0.47 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 2.41 5.98 -51.93 -0.31 2.10 16 38 H 0.25 6.78 8.31 -40.82 -0.34 6.45 16 39 H 0.03 0.52 7.29 -51.93 -0.38 0.15 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 42 H 0.07 1.12 7.43 -51.93 -0.39 0.73 16 43 H 0.08 1.16 7.86 -51.93 -0.41 0.75 16 44 H 0.09 1.09 7.29 -51.93 -0.38 0.71 16 LS Contribution 341.29 15.07 5.14 5.14 Total: -1.00 -31.20 341.29 -9.58 -40.78 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -7.22 Total: -0.33 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -1.06 Total: 5.38 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.59 Total: -50.05 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.82 Total: -17.13 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.20 -9.58 -40.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048946824.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.264 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds