Wall clock time and date at job start Tue Mar 31 2020 06:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.45129 * 2 1 4 4 C 1.54483 * 110.62616 * 122.67950 * 2 1 3 5 5 O 1.44427 * 104.79790 * 142.68509 * 4 2 1 6 6 C 1.44422 * 105.27495 * 319.48514 * 5 4 2 7 7 H 1.09002 * 110.46950 * 281.63144 * 6 5 4 8 8 C 1.50703 * 110.36873 * 159.34536 * 6 5 4 9 9 O 1.21284 * 120.00317 * 359.62511 * 8 6 5 10 10 N 1.34779 * 120.00101 * 179.61841 * 8 6 5 11 11 C 1.46776 * 125.33520 * 0.02562 * 10 8 6 12 12 C 1.53971 * 106.62673 * 198.51561 * 11 10 8 13 13 H 1.09002 * 113.01755 * 94.27673 * 12 11 10 14 14 C 1.53926 * 109.91794 * 221.55636 * 12 11 10 15 15 N 1.47621 * 106.28305 * 80.85137 * 14 12 11 16 16 C 1.36936 * 125.43814 * 198.68628 * 15 14 12 17 17 H 1.08002 * 119.99503 * 180.83715 * 16 15 14 18 18 C 1.38811 * 120.00226 * 0.83460 * 16 15 14 19 19 N 1.31614 * 120.00009 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00001 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47043 * 60.00002 * 20 18 16 22 22 H 1.48496 * 109.47232 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47154 * 300.00420 * 20 18 16 24 24 C 1.46632 * 109.22512 * 19.40863 * 15 14 12 25 25 C 1.53696 * 108.01255 * 358.47815 * 24 15 14 26 26 H 1.09004 * 113.05609 * 106.18489 * 25 24 15 27 27 C 1.46663 * 125.34360 * 179.97438 * 10 8 6 28 28 C 1.54473 * 104.80372 * 40.51885 * 6 5 4 29 29 H 1.09005 * 109.46868 * 182.60301 * 1 2 3 30 30 H 1.08992 * 109.47308 * 302.60661 * 1 2 3 31 31 H 1.09000 * 109.46931 * 62.61399 * 1 2 3 32 32 H 1.08999 * 110.37358 * 261.51322 * 4 2 1 33 33 H 1.08998 * 110.37191 * 23.74647 * 4 2 1 34 34 H 1.09003 * 110.03209 * 79.22309 * 11 10 8 35 35 H 1.08996 * 110.02884 * 317.80292 * 11 10 8 36 36 H 1.08995 * 110.01213 * 201.20095 * 14 12 11 37 37 H 1.08999 * 110.00929 * 322.56835 * 14 12 11 38 38 H 0.97005 * 120.00075 * 179.97438 * 19 18 16 39 39 H 1.08994 * 109.76271 * 238.83852 * 24 15 14 40 40 H 1.09005 * 109.76893 * 118.12120 * 24 15 14 41 41 H 1.09013 * 109.76822 * 59.83729 * 27 10 8 42 42 H 1.08998 * 109.77415 * 299.08915 * 27 10 8 43 43 H 1.09001 * 110.51764 * 94.66202 * 28 6 5 44 44 H 1.09003 * 110.50949 * 217.37497 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0213 0.0000 4 6 2.0742 -0.7806 1.2169 5 8 3.2436 -1.4683 0.7212 6 6 2.8787 -1.9393 -0.5944 7 1 2.2618 -2.8350 -0.5211 8 6 4.1132 -2.2193 -1.4123 9 8 5.2123 -2.0326 -0.9348 10 7 3.9958 -2.6774 -2.6744 11 6 2.7291 -2.9435 -3.3665 12 6 3.0609 -3.8670 -4.5530 13 1 2.9311 -4.9238 -4.3199 14 6 2.2723 -3.4243 -5.7986 15 7 3.0186 -2.2911 -6.3799 16 6 2.5107 -1.3744 -7.2614 17 1 3.1416 -0.5853 -7.6430 18 6 1.1852 -1.4596 -7.6644 19 7 0.4163 -2.4210 -7.1990 20 14 0.4922 -0.2087 -8.8663 21 1 1.2580 -0.2664 -10.1373 22 1 -0.9356 -0.5172 -9.1336 23 1 0.6032 1.1525 -8.2830 24 6 4.3961 -2.3117 -5.8777 25 6 4.5283 -3.4911 -4.9010 26 1 5.0905 -4.3278 -5.3157 27 6 5.1136 -2.9872 -3.5719 28 6 2.0715 -0.7798 -1.2190 29 1 -0.3633 -1.0267 0.0467 30 1 -0.3633 0.5537 0.8656 31 1 -0.3633 0.4727 -0.9125 32 1 2.3490 -0.0931 2.0168 33 1 1.3326 -1.4966 1.5710 34 1 2.2984 -2.0101 -3.7290 35 1 2.0318 -3.4394 -2.6913 36 1 2.1988 -4.2499 -6.5064 37 1 1.2757 -3.0904 -5.5098 38 1 -0.5102 -2.4803 -7.4803 39 1 4.6133 -1.3779 -5.3592 40 1 5.0896 -2.4418 -6.7085 41 1 5.7393 -3.7615 -3.1278 42 1 5.7062 -2.0892 -3.7464 43 1 2.7201 -0.1440 -1.8217 44 1 1.2492 -1.1674 -1.8204 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048946824.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:32 Heat of formation + Delta-G solvation = -68.811008 kcal Electronic energy + Delta-G solvation = -25067.420106 eV Core-core repulsion = 21598.542887 eV Total energy + Delta-G solvation = -3468.877219 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.83747 -40.55324 -39.13606 -36.59377 -34.60137 -34.14137 -32.17407 -31.58585 -30.55696 -27.42915 -27.13610 -27.00409 -25.38556 -23.74216 -21.86277 -21.43405 -20.81314 -20.62182 -18.93687 -18.37868 -17.54635 -17.11412 -16.82565 -16.64154 -16.28679 -15.68689 -15.50721 -15.42689 -14.91780 -14.50391 -14.33782 -14.24602 -13.91481 -13.59525 -13.50557 -13.26803 -13.19363 -13.11573 -12.74533 -12.72220 -12.67012 -12.20756 -12.03400 -11.86834 -11.80220 -11.74428 -11.64930 -11.52662 -11.36371 -11.06492 -10.75055 -10.64353 -9.72061 -8.84763 -7.77881 -5.17812 1.42112 1.49215 1.50153 1.56664 1.70605 2.51228 2.93162 3.21504 3.34261 3.46626 3.57431 3.63707 3.76433 3.80004 3.88327 3.96226 4.11078 4.19443 4.27534 4.29302 4.47374 4.51104 4.59281 4.62765 4.73815 4.75362 4.81846 4.83111 4.84854 4.91898 5.03028 5.08118 5.16185 5.18659 5.19989 5.32053 5.35509 5.49948 5.62261 5.70107 5.85219 6.31701 6.39144 6.99992 7.14912 7.81273 8.43359 9.26039 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015237 B = 0.005038 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.186362 B = 5556.601354 C = 6821.778534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 H 0.082 0.918 4 C 0.043 3.957 5 O -0.379 6.379 6 C 0.068 3.932 7 H 0.120 0.880 8 C 0.527 3.473 9 O -0.575 6.575 10 N -0.604 5.604 11 C 0.117 3.883 12 C -0.110 4.110 13 H 0.120 0.880 14 C 0.176 3.824 15 N -0.620 5.620 16 C -0.241 4.241 17 H 0.073 0.927 18 C -0.055 4.055 19 N -0.942 5.942 20 Si 0.971 3.029 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.139 3.861 25 C -0.094 4.094 26 H 0.123 0.877 27 C 0.122 3.878 28 C -0.138 4.138 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.097 0.903 36 H -0.004 1.004 37 H 0.073 0.927 38 H 0.249 0.751 39 H 0.016 0.984 40 H 0.023 0.977 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.527 -1.077 13.779 13.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.140 4.140 3 H 0.101 0.899 4 C -0.033 4.033 5 O -0.298 6.298 6 C 0.007 3.993 7 H 0.137 0.863 8 C 0.316 3.684 9 O -0.454 6.454 10 N -0.337 5.337 11 C -0.005 4.005 12 C -0.130 4.130 13 H 0.138 0.862 14 C 0.051 3.949 15 N -0.347 5.347 16 C -0.370 4.370 17 H 0.091 0.909 18 C -0.248 4.248 19 N -0.591 5.591 20 Si 0.800 3.200 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.014 3.986 25 C -0.114 4.114 26 H 0.141 0.859 27 C -0.001 4.001 28 C -0.177 4.177 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.014 0.986 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.034 0.966 40 H 0.041 0.959 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.079 -0.910 14.125 14.154 hybrid contribution -0.344 0.810 -1.267 1.543 sum -0.265 -0.099 12.858 12.861 Atomic orbital electron populations 1.21801 0.91969 1.03074 1.02857 1.22524 0.98104 1.00056 0.93288 0.89917 1.23838 0.87127 0.95640 0.96697 1.89217 1.37214 1.74441 1.28887 1.22839 0.92314 1.00006 0.84139 0.86314 1.20396 0.90836 0.76389 0.80759 1.90667 1.29605 1.53840 1.71337 1.48267 1.09300 1.64133 1.12036 1.22114 0.85285 0.99400 0.93729 1.23143 0.94823 1.00113 0.94936 0.86224 1.21334 0.95962 0.87834 0.89794 1.44685 1.07251 1.30591 1.52133 1.19298 0.94447 1.05453 1.17827 0.90910 1.25438 0.96712 1.00407 1.02240 1.70023 1.06597 1.34405 1.48120 0.85270 0.77037 0.78737 0.78967 1.20910 1.21665 1.20722 1.21326 0.86834 0.95602 0.94844 1.22740 0.96864 0.98198 0.93551 0.85904 1.21803 0.88970 1.00293 0.89026 1.23002 0.99842 0.95904 0.98909 0.91402 0.90633 0.92439 0.87443 0.89668 0.92428 0.88483 0.98565 0.90927 0.94155 0.96648 0.95925 0.90177 0.92409 0.92589 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.97 71.98 0.65 -1.39 16 2 C -0.12 -2.29 3.71 -9.78 -0.04 -2.33 16 3 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 4 C 0.04 0.81 7.19 72.49 0.52 1.33 16 5 O -0.38 -10.93 10.91 -130.60 -1.42 -12.35 16 6 C 0.07 1.80 3.02 30.35 0.09 1.89 16 7 H 0.12 2.50 7.78 -2.39 -0.02 2.49 16 8 C 0.53 17.68 7.13 87.66 0.63 18.30 16 9 O -0.57 -23.89 16.86 15.33 0.26 -23.63 16 10 N -0.60 -18.73 3.31 -817.38 -2.71 -21.44 16 11 C 0.12 3.48 4.95 86.65 0.43 3.91 16 12 C -0.11 -3.49 4.12 -9.32 -0.04 -3.53 16 13 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 14 C 0.18 7.71 4.94 86.48 0.43 8.14 16 15 N -0.62 -29.96 3.39 -695.66 -2.36 -32.32 16 16 C -0.24 -13.00 10.25 84.03 0.86 -12.14 16 17 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 18 C -0.05 -2.94 5.49 84.86 0.47 -2.47 16 19 N -0.94 -52.34 10.15 21.65 0.22 -52.12 16 20 Si 0.97 43.95 29.55 68.60 2.03 45.98 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 22 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 C 0.14 5.51 6.60 86.59 0.57 6.08 16 25 C -0.09 -2.89 4.01 -9.49 -0.04 -2.93 16 26 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 27 C 0.12 3.65 6.23 86.59 0.54 4.19 16 28 C -0.14 -3.34 5.26 31.61 0.17 -3.18 16 29 H 0.07 0.89 8.09 -2.38 -0.02 0.87 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.09 1.23 7.83 -2.39 -0.02 1.21 16 34 H 0.06 2.06 7.38 -2.39 -0.02 2.04 16 35 H 0.10 2.29 7.55 -2.39 -0.02 2.27 16 36 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.07 3.59 5.98 -2.39 -0.01 3.57 16 38 H 0.25 13.50 8.31 -92.70 -0.77 12.73 16 39 H 0.02 0.64 7.29 -2.39 -0.02 0.63 16 40 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 42 H 0.06 1.87 7.43 -2.39 -0.02 1.85 16 43 H 0.06 1.62 7.86 -2.39 -0.02 1.60 16 44 H 0.10 2.24 7.29 -2.39 -0.02 2.22 16 Total: -1.00 -68.85 341.29 2.22 -66.63 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.97 Total: 13.37 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: 5.23 Total: 15.88 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -4.85 Total: -105.88 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -1.17 Total: -35.98 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -68.85 2.22 -66.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048946824.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.178 kcal (2) G-P(sol) polarization free energy of solvation -68.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds