Wall clock time and date at job start Tue Mar 31 2020 06:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.90852 * 2 1 4 4 C 1.54375 * 110.84891 * 236.41392 * 2 1 3 5 5 O 1.43237 * 107.59209 * 220.45310 * 4 2 1 6 6 C 1.43653 * 109.97050 * 358.28911 * 5 4 2 7 7 H 1.08995 * 110.30740 * 265.51597 * 6 5 4 8 8 C 1.50695 * 110.31011 * 143.34149 * 6 5 4 9 9 O 1.21280 * 120.00253 * 356.45689 * 8 6 5 10 10 N 1.34781 * 119.99631 * 176.45682 * 8 6 5 11 11 C 1.46752 * 125.33519 * 359.69037 * 10 8 6 12 12 C 1.54170 * 106.58518 * 161.46445 * 11 10 8 13 13 H 1.08996 * 113.23045 * 151.14566 * 12 11 10 14 14 C 1.55519 * 109.99720 * 278.72589 * 12 11 10 15 15 N 1.46658 * 108.13963 * 126.67975 * 14 12 11 16 16 C 1.36939 * 125.33357 * 180.71807 * 15 14 12 17 17 H 1.07998 * 120.00090 * 173.98005 * 16 15 14 18 18 C 1.38809 * 119.99999 * 353.97489 * 16 15 14 19 19 N 1.31622 * 120.00052 * 6.95191 * 18 16 15 20 20 Si 1.86800 * 119.99916 * 186.94823 * 18 16 15 21 21 H 1.48499 * 109.46958 * 94.99092 * 20 18 16 22 22 H 1.48506 * 109.47038 * 214.98709 * 20 18 16 23 23 H 1.48494 * 109.47494 * 334.99164 * 20 18 16 24 24 C 1.46753 * 109.33148 * 0.68347 * 15 14 12 25 25 C 1.53979 * 106.68114 * 341.56109 * 24 15 14 26 26 H 1.08998 * 112.80460 * 151.33733 * 25 24 15 27 27 C 1.46655 * 125.32917 * 180.02562 * 10 8 6 28 28 C 1.54950 * 105.13187 * 24.42705 * 6 5 4 29 29 H 1.08996 * 109.47191 * 182.13195 * 1 2 3 30 30 H 1.08999 * 109.47044 * 302.13265 * 1 2 3 31 31 H 1.09002 * 109.47052 * 62.13220 * 1 2 3 32 32 H 1.09006 * 109.83324 * 100.94339 * 4 2 1 33 33 H 1.09000 * 109.83378 * 339.96575 * 4 2 1 34 34 H 1.08996 * 110.02135 * 280.88289 * 11 10 8 35 35 H 1.09003 * 110.01517 * 42.27956 * 11 10 8 36 36 H 1.08998 * 109.70007 * 6.98556 * 14 12 11 37 37 H 1.09002 * 109.67687 * 246.35791 * 14 12 11 38 38 H 0.96998 * 120.00308 * 179.97438 * 19 18 16 39 39 H 1.08998 * 110.01870 * 222.25168 * 24 15 14 40 40 H 1.09009 * 110.01925 * 100.86350 * 24 15 14 41 41 H 1.08999 * 109.76964 * 300.31185 * 27 10 8 42 42 H 1.08997 * 109.77315 * 61.05442 * 27 10 8 43 43 H 1.09000 * 111.12489 * 81.47491 * 28 6 5 44 44 H 1.09005 * 111.12128 * 205.59504 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0794 -0.7981 -1.2018 5 8 3.2044 -1.5553 -0.7407 6 6 3.4464 -1.2783 0.6479 7 1 4.1935 -0.4915 0.7521 8 6 3.8981 -2.5275 1.3595 9 8 3.9460 -3.5820 0.7622 10 7 4.2487 -2.4730 2.6597 11 6 4.2411 -1.2635 3.4908 12 6 4.2461 -1.7375 4.9578 13 1 4.7253 -1.0315 5.6361 14 6 2.8048 -2.1221 5.3974 15 7 2.8418 -3.4826 5.9439 16 6 1.7607 -4.1736 6.4221 17 1 1.8674 -5.2075 6.7157 18 6 0.5276 -3.5454 6.5296 19 7 0.3627 -2.3322 6.0465 20 14 -0.8980 -4.4218 7.3597 21 1 -0.9645 -4.0168 8.7869 22 1 -2.1671 -4.0550 6.6814 23 1 -0.6956 -5.8902 7.2709 24 6 4.2190 -3.9875 5.8972 25 6 4.9789 -3.1062 4.8889 26 1 6.0433 -3.0310 5.1116 27 6 4.7042 -3.6117 3.4638 28 6 2.0827 -0.8028 1.2091 29 1 -0.3633 -1.0269 0.0382 30 1 -0.3633 0.5466 0.8702 31 1 -0.3633 0.4804 -0.9085 32 1 2.3930 -0.1123 -1.9890 33 1 1.3108 -1.4715 -1.5810 34 1 5.1288 -0.6648 3.2865 35 1 3.3426 -0.6794 3.2915 36 1 2.1369 -2.0886 4.5366 37 1 2.4563 -1.4272 6.1615 38 1 -0.4990 -1.8933 6.1213 39 1 4.2248 -5.0254 5.5643 40 1 4.6789 -3.9087 6.8824 41 1 3.9304 -4.3790 3.4879 42 1 5.6182 -4.0232 3.0358 43 1 1.4385 -1.6496 1.4459 44 1 2.2185 -0.1603 2.0791 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048946825.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:35 Heat of formation + Delta-G solvation = -70.477734 kcal Electronic energy + Delta-G solvation = -25268.555063 eV Core-core repulsion = 21799.605569 eV Total energy + Delta-G solvation = -3468.949494 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.81115 -40.51960 -39.08470 -36.60706 -34.63332 -34.17587 -32.11378 -31.58477 -30.60439 -27.52745 -27.26145 -27.01824 -25.26054 -23.62914 -21.82276 -21.71503 -20.87505 -20.28067 -18.90690 -18.61012 -17.64596 -17.23516 -16.79215 -16.60549 -16.30871 -15.90138 -15.52204 -15.02086 -14.76442 -14.59019 -14.32505 -14.11642 -13.95845 -13.65968 -13.63101 -13.39115 -13.32205 -13.00561 -12.78556 -12.72926 -12.68899 -12.22296 -12.01482 -12.00681 -11.86089 -11.85918 -11.61249 -11.57455 -11.26063 -11.04016 -10.68845 -10.47553 -9.65657 -8.84488 -7.87237 -5.19366 1.43535 1.44010 1.45475 1.52561 1.74808 2.47734 2.88063 3.22292 3.30939 3.41382 3.50856 3.69882 3.74979 3.81186 3.93538 3.96192 4.03415 4.19797 4.25812 4.33168 4.43935 4.52454 4.63599 4.67963 4.70909 4.74705 4.78963 4.85836 4.89953 4.94253 4.99660 5.01942 5.08523 5.15708 5.24797 5.35068 5.40966 5.47008 5.70498 5.80184 5.85850 6.23106 6.46145 7.05202 7.13305 7.81310 8.42223 9.22702 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014361 B = 0.005512 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.322706 B = 5078.441353 C = 6276.795218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 H 0.121 0.879 4 C 0.046 3.954 5 O -0.388 6.388 6 C 0.077 3.923 7 H 0.133 0.867 8 C 0.516 3.484 9 O -0.585 6.585 10 N -0.603 5.603 11 C 0.105 3.895 12 C -0.112 4.112 13 H 0.131 0.869 14 C 0.196 3.804 15 N -0.625 5.625 16 C -0.244 4.244 17 H 0.074 0.926 18 C -0.059 4.059 19 N -0.941 5.941 20 Si 0.970 3.030 21 H -0.283 1.283 22 H -0.296 1.296 23 H -0.275 1.275 24 C 0.136 3.864 25 C -0.093 4.093 26 H 0.138 0.862 27 C 0.123 3.877 28 C -0.141 4.141 29 H 0.039 0.961 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.007 0.993 37 H 0.013 0.987 38 H 0.246 0.754 39 H 0.029 0.971 40 H 0.035 0.965 41 H 0.028 0.972 42 H 0.075 0.925 43 H 0.047 0.953 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.101 10.791 -8.755 16.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.139 0.861 4 C -0.030 4.030 5 O -0.307 6.307 6 C 0.017 3.983 7 H 0.150 0.850 8 C 0.305 3.695 9 O -0.465 6.465 10 N -0.336 5.336 11 C -0.016 4.016 12 C -0.132 4.132 13 H 0.148 0.852 14 C 0.071 3.929 15 N -0.351 5.351 16 C -0.373 4.373 17 H 0.092 0.908 18 C -0.253 4.253 19 N -0.590 5.590 20 Si 0.799 3.201 21 H -0.210 1.210 22 H -0.222 1.222 23 H -0.200 1.200 24 C 0.011 3.989 25 C -0.112 4.112 26 H 0.156 0.844 27 C 0.000 4.000 28 C -0.179 4.179 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.081 0.919 34 H 0.130 0.870 35 H 0.100 0.900 36 H 0.025 0.975 37 H 0.031 0.969 38 H 0.056 0.944 39 H 0.047 0.953 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.093 0.907 43 H 0.066 0.934 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.007 10.108 -9.252 15.871 hybrid contribution -1.498 -0.997 0.683 1.925 sum 6.509 9.111 -8.570 14.100 Atomic orbital electron populations 1.21733 0.93128 1.01684 1.03431 1.22737 0.97586 1.00685 0.92001 0.86092 1.23539 0.87642 0.94483 0.97364 1.88466 1.50438 1.68863 1.22969 1.22861 0.99723 0.93331 0.82408 0.85004 1.20843 0.76730 0.90991 0.80913 1.90654 1.55433 1.33565 1.66827 1.48195 1.64739 1.11724 1.08981 1.22398 1.03917 0.86522 0.88795 1.23522 0.96461 0.96992 0.96204 0.85161 1.21127 0.91493 0.85162 0.95148 1.44478 1.03257 1.14457 1.72942 1.19360 0.88335 0.94767 1.34863 0.90766 1.25529 1.00018 0.97647 1.02077 1.70150 1.23427 1.14713 1.50671 0.85190 0.78791 0.77981 0.78183 1.21012 1.22249 1.19957 1.21451 0.84807 0.95994 0.96671 1.22880 1.01257 0.95126 0.91923 0.84385 1.21733 0.98347 0.88836 0.91090 1.23367 0.93610 1.00470 1.00432 0.94216 0.91628 0.89950 0.88204 0.91897 0.87002 0.90015 0.97472 0.96861 0.94415 0.95267 0.94764 0.95336 0.90716 0.93387 0.87004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.14 71.98 0.66 -2.01 16 2 C -0.11 -2.12 3.60 -9.53 -0.03 -2.16 16 3 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 4 C 0.05 1.00 7.40 72.45 0.54 1.54 16 5 O -0.39 -12.09 10.61 -130.50 -1.38 -13.47 16 6 C 0.08 2.15 3.21 30.51 0.10 2.25 16 7 H 0.13 2.64 8.13 -2.39 -0.02 2.62 16 8 C 0.52 19.00 7.21 87.65 0.63 19.63 16 9 O -0.58 -27.31 16.86 15.45 0.26 -27.05 16 10 N -0.60 -19.90 3.31 -817.17 -2.70 -22.60 16 11 C 0.11 2.68 5.77 86.73 0.50 3.18 16 12 C -0.11 -3.39 4.17 -8.70 -0.04 -3.43 16 13 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 14 C 0.20 8.92 4.86 87.22 0.42 9.35 16 15 N -0.63 -31.34 3.38 -694.05 -2.34 -33.69 16 16 C -0.24 -13.77 10.24 84.03 0.86 -12.90 16 17 H 0.07 4.10 7.84 -2.91 -0.02 4.07 16 18 C -0.06 -3.35 5.48 84.86 0.46 -2.89 16 19 N -0.94 -55.12 10.30 21.65 0.22 -54.89 16 20 Si 0.97 46.13 29.56 68.60 2.03 48.16 16 21 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 22 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 23 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 24 C 0.14 5.31 6.40 86.66 0.55 5.86 16 25 C -0.09 -2.76 4.03 -9.40 -0.04 -2.80 16 26 H 0.14 2.91 8.14 -2.39 -0.02 2.89 16 27 C 0.12 4.24 6.23 86.58 0.54 4.78 16 28 C -0.14 -3.64 5.32 32.05 0.17 -3.47 16 29 H 0.04 0.90 8.12 -2.39 -0.02 0.88 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.06 1.46 7.81 -2.39 -0.02 1.44 16 34 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.08 2.08 4.98 -2.39 -0.01 2.07 16 36 H 0.01 0.37 6.95 -2.39 -0.02 0.36 16 37 H 0.01 0.68 7.32 -2.39 -0.02 0.66 16 38 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 39 H 0.03 1.17 7.79 -2.39 -0.02 1.15 16 40 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.03 1.24 7.48 -2.39 -0.02 1.22 16 42 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.05 1.63 7.93 -2.39 -0.02 1.62 16 44 H 0.11 2.50 6.16 -2.38 -0.01 2.49 16 Total: -1.00 -78.07 340.50 2.39 -75.67 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.98 Total: 10.93 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 5.33 Total: 16.93 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -4.82 Total: -111.18 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -1.12 Total: -40.52 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -78.07 2.39 -75.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048946825.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.197 kcal (2) G-P(sol) polarization free energy of solvation -78.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds