Wall clock time and date at job start Tue Mar 31 2020 07:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.54482 * 2 1 4 4 C 1.54811 * 110.48736 * 237.37967 * 2 1 3 5 5 C 1.54998 * 102.09236 * 220.44480 * 4 2 1 6 6 O 1.44380 * 103.48996 * 37.03094 * 5 4 2 7 7 C 1.43744 * 106.97293 * 319.93619 * 6 5 4 8 8 H 1.09010 * 109.87957 * 266.94309 * 7 6 5 9 9 C 1.50699 * 109.87792 * 145.94076 * 7 6 5 10 10 O 1.21275 * 119.99918 * 345.23534 * 9 7 6 11 11 N 1.34784 * 119.99821 * 165.23462 * 9 7 6 12 12 C 1.46782 * 125.33776 * 354.74843 * 11 9 7 13 13 C 1.53967 * 106.62403 * 198.53757 * 12 11 9 14 14 H 1.08999 * 113.01631 * 94.27904 * 13 12 11 15 15 C 1.53928 * 109.24855 * 221.81564 * 13 12 11 16 16 N 1.46030 * 107.08252 * 82.51128 * 15 13 12 17 17 C 1.36943 * 125.23962 * 198.01560 * 16 15 13 18 18 H 1.08002 * 120.00106 * 179.32437 * 17 16 15 19 19 C 1.38813 * 119.99733 * 359.32201 * 17 16 15 20 20 N 1.31615 * 120.00061 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99872 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47699 * 59.99867 * 21 19 17 23 23 H 1.48502 * 109.47093 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47118 * 299.99733 * 21 19 17 25 25 C 1.46642 * 109.43227 * 17.42974 * 16 15 13 26 26 C 1.53687 * 108.00758 * 359.74652 * 25 16 15 27 27 H 1.09000 * 112.56080 * 105.90898 * 26 25 16 28 28 C 1.46660 * 125.33525 * 174.77115 * 11 9 7 29 29 H 1.09003 * 109.47442 * 301.98314 * 1 2 3 30 30 H 1.09005 * 109.47009 * 61.98038 * 1 2 3 31 31 H 1.09007 * 109.47551 * 181.97726 * 1 2 3 32 32 H 1.09000 * 110.90383 * 102.25005 * 4 2 1 33 33 H 1.08997 * 110.94147 * 338.66304 * 4 2 1 34 34 H 1.08995 * 110.61836 * 278.52150 * 5 4 2 35 35 H 1.09000 * 110.61251 * 155.52873 * 5 4 2 36 36 H 1.09003 * 110.02473 * 79.24636 * 12 11 9 37 37 H 1.09001 * 110.02620 * 317.83125 * 12 11 9 38 38 H 1.09004 * 110.00424 * 200.95408 * 15 13 12 39 39 H 1.09004 * 110.00979 * 322.31401 * 15 13 12 40 40 H 0.97000 * 120.00265 * 179.97438 * 20 19 17 41 41 H 1.09008 * 109.76243 * 240.10867 * 25 16 15 42 42 H 1.08993 * 109.76237 * 119.39110 * 25 16 15 43 43 H 1.09001 * 109.77304 * 59.81663 * 28 11 9 44 44 H 1.09004 * 109.79066 * 299.06224 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0206 0.0000 4 6 2.0718 -0.7818 -1.2214 5 6 3.2659 -1.5562 -0.6076 6 8 2.7954 -1.9111 0.7104 7 6 2.0692 -0.7782 1.2159 8 1 2.7343 -0.1424 1.8004 9 6 0.9225 -1.2461 2.0745 10 8 0.5684 -2.4053 2.0341 11 7 0.2906 -0.3763 2.8873 12 6 0.6876 1.0191 3.1106 13 6 0.0077 1.4668 4.4174 14 1 0.6468 1.3486 5.2925 15 6 -0.5390 2.8949 4.2416 16 7 -1.8320 2.7799 3.5726 17 6 -2.4803 3.7980 2.9258 18 1 -3.4320 3.6154 2.4489 19 6 -1.9144 5.0649 2.8834 20 7 -0.7545 5.2873 3.4643 21 14 -2.7991 6.4539 2.0018 22 1 -4.1257 6.6746 2.6316 23 1 -1.9914 7.6962 2.0997 24 1 -2.9833 6.0952 0.5725 25 6 -2.3207 1.4022 3.6891 26 6 -1.2757 0.5920 4.4724 27 1 -1.5937 0.3742 5.4919 28 6 -0.9013 -0.6758 3.6877 29 1 -0.3634 0.5443 0.8717 30 1 -0.3633 0.4828 -0.9073 31 1 -0.3634 -1.0271 0.0355 32 1 2.4103 -0.0993 -2.0010 33 1 1.3199 -1.4693 -1.6087 34 1 4.1455 -0.9159 -0.5418 35 1 3.4838 -2.4507 -1.1911 36 1 0.3490 1.6407 2.2816 37 1 1.7708 1.0875 3.2108 38 1 -0.6818 3.3621 5.2160 39 1 0.1514 3.4873 3.6411 40 1 -0.3589 6.1724 3.4343 41 1 -2.4517 0.9723 2.6960 42 1 -3.2708 1.3922 4.2232 43 1 -0.6850 -1.4883 4.3814 44 1 -1.7243 -0.9601 3.0320 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049063977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:21 Heat of formation + Delta-G solvation = -44.121760 kcal Electronic energy + Delta-G solvation = -25532.856062 eV Core-core repulsion = 22065.049449 eV Total energy + Delta-G solvation = -3467.806613 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.80006 -39.32221 -37.64659 -35.04403 -33.67261 -32.29655 -30.59125 -30.03207 -29.36823 -26.93824 -25.53829 -25.43755 -23.45908 -22.44516 -21.08002 -20.12503 -19.40991 -18.87165 -17.43328 -16.89697 -16.42645 -16.15987 -15.70486 -14.92224 -14.74502 -14.38797 -14.26750 -13.91012 -13.70358 -13.20255 -12.99086 -12.86118 -12.48570 -12.30510 -12.14675 -11.89221 -11.60323 -11.53467 -11.46517 -11.18725 -11.03884 -11.00674 -10.84807 -10.79666 -10.39196 -10.21323 -10.07762 -10.03996 -9.90564 -9.68151 -9.30884 -8.67841 -8.35104 -6.90057 -5.76094 -3.14247 2.74660 2.98697 3.35470 3.40693 3.41155 3.95468 4.31796 4.42417 4.53560 4.64851 4.78317 4.91141 5.03720 5.04870 5.16666 5.27086 5.36358 5.42622 5.48253 5.53073 5.53974 5.63727 5.63912 5.73956 5.82849 5.84980 5.89604 5.94750 6.05102 6.13497 6.20745 6.33399 6.40738 6.46487 6.61916 6.67611 6.72610 6.80395 7.39672 7.55568 7.72140 7.74989 8.24855 8.35841 9.16723 9.76243 10.39016 11.30576 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018471 B = 0.004996 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.558882 B = 5602.600409 C = 6433.439472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.110 4.110 3 H 0.095 0.905 4 C -0.150 4.150 5 C 0.045 3.955 6 O -0.351 6.351 7 C 0.066 3.934 8 H 0.090 0.910 9 C 0.536 3.464 10 O -0.535 6.535 11 N -0.609 5.609 12 C 0.107 3.893 13 C -0.122 4.122 14 H 0.088 0.912 15 C 0.173 3.827 16 N -0.600 5.600 17 C -0.225 4.225 18 H 0.077 0.923 19 C -0.007 4.007 20 N -0.923 5.923 21 Si 0.913 3.087 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.143 3.857 26 C -0.109 4.109 27 H 0.095 0.905 28 C 0.122 3.878 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.019 0.981 39 H 0.096 0.904 40 H 0.253 0.747 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.062 0.938 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.797 -9.178 -4.562 12.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.130 4.130 3 H 0.113 0.887 4 C -0.188 4.188 5 C -0.032 4.032 6 O -0.269 6.269 7 C 0.005 3.995 8 H 0.107 0.893 9 C 0.324 3.676 10 O -0.411 6.411 11 N -0.344 5.344 12 C -0.016 4.016 13 C -0.142 4.142 14 H 0.106 0.894 15 C 0.048 3.952 16 N -0.326 5.326 17 C -0.354 4.354 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.571 5.571 21 Si 0.743 3.257 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.017 3.983 26 C -0.128 4.128 27 H 0.113 0.887 28 C -0.001 4.001 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.037 0.963 39 H 0.113 0.887 40 H 0.064 0.936 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.080 0.920 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.710 -9.833 -4.575 12.753 hybrid contribution -0.469 1.059 -0.460 1.246 sum 6.240 -8.774 -5.035 11.886 Atomic orbital electron populations 1.22094 0.93179 1.02661 1.03731 1.22435 0.97962 0.99872 0.92685 0.88702 1.23247 0.98340 0.99451 0.97715 1.23606 0.96113 0.99881 0.83576 1.88962 1.70668 1.36098 1.31194 1.22724 0.92752 0.88390 0.95674 0.89267 1.19827 0.83356 0.84999 0.79415 1.90679 1.66283 1.17392 1.66759 1.48291 1.29375 1.12663 1.44057 1.22274 0.98840 0.81073 0.99370 1.23267 0.95428 0.99662 0.95882 0.89380 1.21245 0.88293 0.88620 0.97085 1.44037 1.19867 1.04628 1.64040 1.19005 1.01968 0.87698 1.26691 0.90524 1.24758 0.97370 0.97415 1.00736 1.69847 1.17578 1.21372 1.48329 0.86183 0.78629 0.81539 0.79327 1.21177 1.21556 1.21190 1.21199 0.94508 0.86351 0.96237 1.22762 0.97053 0.93788 0.99223 0.88718 1.21758 0.87209 0.97294 0.93820 0.90391 0.91815 0.92223 0.89815 0.90128 0.91891 0.88707 0.89812 0.91701 0.96279 0.88668 0.93620 0.95806 0.95809 0.91963 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 7.94 37.16 0.30 -1.96 16 2 C -0.11 -1.37 3.61 -89.09 -0.32 -1.69 16 3 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.15 -1.55 6.71 -24.72 -0.17 -1.71 16 5 C 0.04 0.47 7.72 38.21 0.29 0.77 16 6 O -0.35 -5.29 10.78 -54.35 -0.59 -5.87 16 7 C 0.07 0.94 3.21 -27.31 -0.09 0.85 16 8 H 0.09 1.13 7.15 -51.92 -0.37 0.76 16 9 C 0.54 9.09 5.01 -10.98 -0.05 9.04 16 10 O -0.53 -10.90 16.81 -13.56 -0.23 -11.12 16 11 N -0.61 -9.72 2.38 -172.28 -0.41 -10.13 16 12 C 0.11 1.68 5.37 -3.38 -0.02 1.66 16 13 C -0.12 -2.06 4.17 -88.35 -0.37 -2.43 16 14 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 15 C 0.17 3.80 4.73 -3.81 -0.02 3.78 16 16 N -0.60 -14.19 3.36 -172.49 -0.58 -14.77 16 17 C -0.23 -5.93 10.25 -15.06 -0.15 -6.08 16 18 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 19 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 20 N -0.92 -25.28 10.17 55.49 0.56 -24.72 16 21 Si 0.91 21.16 29.55 -169.99 -5.02 16.14 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.14 2.80 6.64 -3.61 -0.02 2.77 16 26 C -0.11 -1.76 3.98 -88.60 -0.35 -2.11 16 27 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 28 C 0.12 1.90 6.26 -3.58 -0.02 1.88 16 29 H 0.08 1.25 4.98 -51.93 -0.26 1.00 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.92 7.31 -51.93 -0.38 0.54 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.87 7.87 -51.93 -0.41 0.46 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.49 6.39 -51.93 -0.33 1.16 16 37 H 0.06 0.89 7.24 -51.93 -0.38 0.51 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.10 2.32 6.04 -51.93 -0.31 2.01 16 40 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 41 H 0.02 0.48 7.34 -51.92 -0.38 0.10 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 1.07 7.47 -51.93 -0.39 0.68 16 LS Contribution 334.79 15.07 5.05 5.05 Total: -1.00 -30.82 334.79 -9.29 -40.11 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.98 Total: 0.84 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -1.09 Total: 4.47 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.43 Total: -49.61 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.81 Total: -17.00 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.82 -9.29 -40.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049063977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.010 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds