Wall clock time and date at job start Tue Mar 31 2020 07:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.54482 * 2 1 4 4 C 1.54811 * 110.48736 * 237.37967 * 2 1 3 5 5 C 1.54998 * 102.09236 * 220.44480 * 4 2 1 6 6 O 1.44380 * 103.48996 * 37.03094 * 5 4 2 7 7 C 1.43744 * 106.97293 * 319.93619 * 6 5 4 8 8 H 1.09010 * 109.87957 * 266.94309 * 7 6 5 9 9 C 1.50699 * 109.87792 * 145.94076 * 7 6 5 10 10 O 1.21275 * 119.99918 * 345.23534 * 9 7 6 11 11 N 1.34784 * 119.99821 * 165.23462 * 9 7 6 12 12 C 1.46782 * 125.33776 * 354.74843 * 11 9 7 13 13 C 1.53967 * 106.62403 * 198.53757 * 12 11 9 14 14 H 1.08999 * 113.01631 * 94.27904 * 13 12 11 15 15 C 1.53928 * 109.24855 * 221.81564 * 13 12 11 16 16 N 1.46030 * 107.08252 * 82.51128 * 15 13 12 17 17 C 1.36943 * 125.23962 * 198.01560 * 16 15 13 18 18 H 1.08002 * 120.00106 * 179.32437 * 17 16 15 19 19 C 1.38813 * 119.99733 * 359.32201 * 17 16 15 20 20 N 1.31615 * 120.00061 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99872 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47699 * 59.99867 * 21 19 17 23 23 H 1.48502 * 109.47093 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47118 * 299.99733 * 21 19 17 25 25 C 1.46642 * 109.43227 * 17.42974 * 16 15 13 26 26 C 1.53687 * 108.00758 * 359.74652 * 25 16 15 27 27 H 1.09000 * 112.56080 * 105.90898 * 26 25 16 28 28 C 1.46660 * 125.33525 * 174.77115 * 11 9 7 29 29 H 1.09003 * 109.47442 * 301.98314 * 1 2 3 30 30 H 1.09005 * 109.47009 * 61.98038 * 1 2 3 31 31 H 1.09007 * 109.47551 * 181.97726 * 1 2 3 32 32 H 1.09000 * 110.90383 * 102.25005 * 4 2 1 33 33 H 1.08997 * 110.94147 * 338.66304 * 4 2 1 34 34 H 1.08995 * 110.61836 * 278.52150 * 5 4 2 35 35 H 1.09000 * 110.61251 * 155.52873 * 5 4 2 36 36 H 1.09003 * 110.02473 * 79.24636 * 12 11 9 37 37 H 1.09001 * 110.02620 * 317.83125 * 12 11 9 38 38 H 1.09004 * 110.00424 * 200.95408 * 15 13 12 39 39 H 1.09004 * 110.00979 * 322.31401 * 15 13 12 40 40 H 0.97000 * 120.00265 * 179.97438 * 20 19 17 41 41 H 1.09008 * 109.76243 * 240.10867 * 25 16 15 42 42 H 1.08993 * 109.76237 * 119.39110 * 25 16 15 43 43 H 1.09001 * 109.77304 * 59.81663 * 28 11 9 44 44 H 1.09004 * 109.79066 * 299.06224 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0206 0.0000 4 6 2.0718 -0.7818 -1.2214 5 6 3.2659 -1.5562 -0.6076 6 8 2.7954 -1.9111 0.7104 7 6 2.0692 -0.7782 1.2159 8 1 2.7343 -0.1424 1.8004 9 6 0.9225 -1.2461 2.0745 10 8 0.5684 -2.4053 2.0341 11 7 0.2906 -0.3763 2.8873 12 6 0.6876 1.0191 3.1106 13 6 0.0077 1.4668 4.4174 14 1 0.6468 1.3486 5.2925 15 6 -0.5390 2.8949 4.2416 16 7 -1.8320 2.7799 3.5726 17 6 -2.4803 3.7980 2.9258 18 1 -3.4320 3.6154 2.4489 19 6 -1.9144 5.0649 2.8834 20 7 -0.7545 5.2873 3.4643 21 14 -2.7991 6.4539 2.0018 22 1 -4.1257 6.6746 2.6316 23 1 -1.9914 7.6962 2.0997 24 1 -2.9833 6.0952 0.5725 25 6 -2.3207 1.4022 3.6891 26 6 -1.2757 0.5920 4.4724 27 1 -1.5937 0.3742 5.4919 28 6 -0.9013 -0.6758 3.6877 29 1 -0.3634 0.5443 0.8717 30 1 -0.3633 0.4828 -0.9073 31 1 -0.3634 -1.0271 0.0355 32 1 2.4103 -0.0993 -2.0010 33 1 1.3199 -1.4693 -1.6087 34 1 4.1455 -0.9159 -0.5418 35 1 3.4838 -2.4507 -1.1911 36 1 0.3490 1.6407 2.2816 37 1 1.7708 1.0875 3.2108 38 1 -0.6818 3.3621 5.2160 39 1 0.1514 3.4873 3.6411 40 1 -0.3589 6.1724 3.4343 41 1 -2.4517 0.9723 2.6960 42 1 -3.2708 1.3922 4.2232 43 1 -0.6850 -1.4883 4.3814 44 1 -1.7243 -0.9601 3.0320 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049063977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:20 Heat of formation + Delta-G solvation = -62.148450 kcal Electronic energy + Delta-G solvation = -25533.637758 eV Core-core repulsion = 22065.049449 eV Total energy + Delta-G solvation = -3468.588309 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.03354 -40.57753 -38.98840 -36.64545 -34.81892 -33.96861 -31.91210 -31.57034 -30.62348 -28.14701 -27.17816 -26.98256 -24.83311 -23.50478 -22.19643 -21.76174 -20.85082 -20.11260 -18.90451 -18.39740 -17.55474 -17.40431 -17.02694 -16.64887 -16.09048 -15.59059 -15.58077 -15.31326 -14.97054 -14.55386 -14.34724 -14.26233 -13.75876 -13.63519 -13.53480 -13.34587 -13.21718 -13.08067 -12.72402 -12.67867 -12.40136 -12.26094 -12.05005 -12.02530 -11.86605 -11.75460 -11.70863 -11.52658 -11.38442 -11.10887 -10.68105 -10.49809 -9.67882 -8.83100 -7.77465 -5.17014 1.47110 1.49993 1.51029 1.57491 1.77189 2.51977 2.93955 3.24412 3.35350 3.41042 3.54444 3.65151 3.68112 3.81532 3.94103 4.01219 4.14754 4.26401 4.28208 4.30606 4.38345 4.47934 4.57338 4.58816 4.63883 4.76901 4.81158 4.83866 4.89352 4.92474 4.99076 5.03764 5.10138 5.15664 5.20926 5.26259 5.33386 5.51350 5.64433 5.77331 5.85745 6.32303 6.43345 7.05629 7.17825 7.84200 8.44441 9.26719 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018471 B = 0.004996 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.558882 B = 5602.600409 C = 6433.439472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 H 0.111 0.889 4 C -0.144 4.144 5 C 0.040 3.960 6 O -0.382 6.382 7 C 0.066 3.934 8 H 0.109 0.891 9 C 0.533 3.467 10 O -0.575 6.575 11 N -0.605 5.605 12 C 0.115 3.885 13 C -0.111 4.111 14 H 0.117 0.883 15 C 0.182 3.818 16 N -0.617 5.617 17 C -0.241 4.241 18 H 0.075 0.925 19 C -0.054 4.054 20 N -0.943 5.943 21 Si 0.971 3.029 22 H -0.283 1.283 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.141 3.859 26 C -0.095 4.095 27 H 0.119 0.881 28 C 0.123 3.877 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.062 0.938 37 H 0.092 0.908 38 H -0.011 1.011 39 H 0.069 0.931 40 H 0.248 0.752 41 H 0.018 0.982 42 H 0.024 0.976 43 H 0.076 0.924 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.880 -9.457 -5.105 13.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.129 4.129 3 H 0.129 0.871 4 C -0.182 4.182 5 C -0.036 4.036 6 O -0.300 6.300 7 C 0.005 3.995 8 H 0.126 0.874 9 C 0.323 3.677 10 O -0.455 6.455 11 N -0.339 5.339 12 C -0.007 4.007 13 C -0.131 4.131 14 H 0.135 0.865 15 C 0.056 3.944 16 N -0.343 5.343 17 C -0.370 4.370 18 H 0.093 0.907 19 C -0.248 4.248 20 N -0.592 5.592 21 Si 0.800 3.200 22 H -0.209 1.209 23 H -0.218 1.218 24 H -0.206 1.206 25 C 0.015 3.985 26 C -0.114 4.114 27 H 0.138 0.862 28 C 0.001 3.999 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.130 0.870 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.007 0.993 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.036 0.964 42 H 0.042 0.958 43 H 0.094 0.906 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.784 -10.120 -5.119 13.756 hybrid contribution -0.868 1.131 -0.309 1.459 sum 6.917 -8.989 -5.428 12.574 Atomic orbital electron populations 1.21992 0.94851 1.00982 1.03144 1.22491 0.96406 1.00861 0.93102 0.87061 1.23248 0.98006 0.99496 0.97410 1.23890 0.96707 1.01116 0.81851 1.88933 1.70886 1.36917 1.33314 1.22814 0.92064 0.88551 0.96064 0.87374 1.20400 0.83729 0.84424 0.79174 1.90652 1.67705 1.19094 1.68016 1.48296 1.29222 1.12539 1.43827 1.22135 1.00258 0.80434 0.97883 1.23158 0.96123 0.96202 0.97597 0.86524 1.20978 0.87396 0.91357 0.94623 1.44274 1.20638 1.05642 1.63769 1.19296 1.02156 0.88781 1.26728 0.90743 1.25452 0.98190 0.99377 1.01767 1.70056 1.18571 1.21289 1.49321 0.85265 0.77495 0.78738 0.78484 1.20925 1.21843 1.20555 1.21317 0.95645 0.84992 0.96510 1.22713 0.95502 0.93196 0.99996 0.86249 1.21747 0.87089 0.97228 0.93847 0.92637 0.90827 0.94200 0.87010 0.91078 0.89546 0.87318 0.91983 0.88964 0.99285 0.91339 0.94213 0.96407 0.95754 0.90570 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.25 7.94 71.98 0.57 -3.68 16 2 C -0.11 -2.52 3.61 -9.80 -0.04 -2.56 16 3 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 4 C -0.14 -2.62 6.71 31.90 0.21 -2.41 16 5 C 0.04 0.73 7.72 72.67 0.56 1.30 16 6 O -0.38 -10.86 10.78 -130.70 -1.41 -12.27 16 7 C 0.07 1.77 3.21 30.22 0.10 1.86 16 8 H 0.11 2.45 7.15 -2.38 -0.02 2.43 16 9 C 0.53 17.63 5.01 87.66 0.44 18.07 16 10 O -0.57 -23.40 16.81 15.27 0.26 -23.14 16 11 N -0.61 -18.59 2.38 -817.37 -1.95 -20.54 16 12 C 0.12 3.45 5.37 86.65 0.46 3.92 16 13 C -0.11 -3.56 4.17 -9.32 -0.04 -3.60 16 14 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 15 C 0.18 8.05 4.73 86.78 0.41 8.46 16 16 N -0.62 -29.53 3.36 -699.65 -2.35 -31.88 16 17 C -0.24 -12.82 10.25 84.03 0.86 -11.96 16 18 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 19 C -0.05 -2.92 5.48 84.86 0.47 -2.45 16 20 N -0.94 -52.51 10.17 21.65 0.22 -52.29 16 21 Si 0.97 43.71 29.55 68.60 2.03 45.73 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 24 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 25 C 0.14 5.47 6.64 86.58 0.57 6.05 16 26 C -0.09 -2.92 3.98 -9.49 -0.04 -2.95 16 27 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 28 C 0.12 3.69 6.26 86.59 0.54 4.23 16 29 H 0.05 1.79 4.98 -2.39 -0.01 1.78 16 30 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.04 1.24 7.31 -2.38 -0.02 1.23 16 32 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.43 7.87 -2.39 -0.02 1.41 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 35 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 2.18 6.39 -2.39 -0.02 2.17 16 37 H 0.09 2.28 7.24 -2.39 -0.02 2.27 16 38 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 39 H 0.07 3.41 6.04 -2.38 -0.01 3.39 16 40 H 0.25 13.53 8.31 -92.71 -0.77 12.76 16 41 H 0.02 0.72 7.34 -2.38 -0.02 0.70 16 42 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.06 1.88 7.47 -2.38 -0.02 1.87 16 Total: -1.00 -67.96 334.79 2.87 -65.09 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.99 Total: 15.04 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 5.09 Total: 14.26 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -4.08 Total: -104.71 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -1.15 Total: -35.41 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -67.96 2.87 -65.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049063977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.939 kcal (2) G-P(sol) polarization free energy of solvation -67.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds