Wall clock time and date at job start Tue Mar 31 2020 06:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.55153 * 2 1 4 4 C 1.55002 * 110.75091 * 237.02828 * 2 1 3 5 5 C 1.54815 * 102.09032 * 204.41120 * 4 2 1 6 6 C 1.54099 * 104.18723 * 20.88011 * 5 4 2 7 7 H 1.09005 * 109.87694 * 242.60562 * 6 5 4 8 8 C 1.50702 * 110.00351 * 121.52900 * 6 5 4 9 9 O 1.21288 * 119.99412 * 245.64001 * 8 6 5 10 10 N 1.34769 * 120.00135 * 65.63454 * 8 6 5 11 11 C 1.46672 * 125.33604 * 180.02562 * 10 8 6 12 12 C 1.53726 * 107.93810 * 180.52527 * 11 10 8 13 13 H 1.09006 * 112.55951 * 139.72180 * 12 11 10 14 14 C 1.53693 * 109.34267 * 266.24698 * 12 11 10 15 15 N 1.47169 * 107.73092 * 128.69564 * 14 12 11 16 16 C 1.36946 * 125.25093 * 180.36810 * 15 14 12 17 17 H 1.08008 * 119.99575 * 179.18095 * 16 15 14 18 18 C 1.38809 * 120.00298 * 359.17904 * 16 15 14 19 19 N 1.31622 * 119.99741 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00072 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47369 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46773 * 120.00379 * 20 18 16 23 23 H 1.48493 * 109.47395 * 240.00122 * 20 18 16 24 24 C 1.46744 * 109.41716 * 359.66028 * 15 14 12 25 25 C 1.53938 * 106.71636 * 342.40336 * 24 15 14 26 26 H 1.08991 * 113.00946 * 150.83123 * 25 24 15 27 27 C 1.46780 * 125.34121 * 359.69958 * 10 8 6 28 28 O 1.43744 * 107.29531 * 2.03003 * 6 5 4 29 29 H 1.09002 * 109.47158 * 300.69937 * 1 2 3 30 30 H 1.09000 * 109.47596 * 60.70332 * 1 2 3 31 31 H 1.09004 * 109.47140 * 180.70104 * 1 2 3 32 32 H 1.08994 * 110.90293 * 322.60474 * 4 2 1 33 33 H 1.08995 * 110.90665 * 86.21355 * 4 2 1 34 34 H 1.08999 * 110.48535 * 262.20553 * 5 4 2 35 35 H 1.08995 * 110.48820 * 139.55812 * 5 4 2 36 36 H 1.08997 * 109.77204 * 300.13996 * 11 10 8 37 37 H 1.08996 * 109.77089 * 60.90385 * 11 10 8 38 38 H 1.09001 * 109.76661 * 247.20371 * 14 12 11 39 39 H 1.09008 * 109.75608 * 7.92148 * 14 12 11 40 40 H 0.96997 * 119.99503 * 179.97438 * 19 18 16 41 41 H 1.08991 * 110.00970 * 223.09178 * 24 15 14 42 42 H 1.09001 * 110.00758 * 101.71423 * 24 15 14 43 43 H 1.09005 * 110.02434 * 280.79767 * 27 10 8 44 44 H 1.09002 * 110.02684 * 42.20774 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0791 -0.7888 -1.2160 5 6 3.4831 -1.2129 -0.7202 6 6 3.3852 -1.1210 0.8149 7 1 4.0845 -0.3721 1.1867 8 6 3.6934 -2.4608 1.4323 9 8 2.8291 -3.0661 2.0303 10 7 4.9294 -2.9862 1.3198 11 6 5.3562 -4.2761 1.8722 12 6 6.8399 -4.4735 1.5218 13 1 7.4088 -4.9112 2.3422 14 6 6.9521 -5.2765 0.2161 15 7 7.8472 -4.5378 -0.6888 16 6 8.1906 -4.9304 -1.9551 17 1 8.8463 -4.3141 -2.5523 18 6 7.6959 -6.1204 -2.4710 19 7 6.8963 -6.8711 -1.7432 20 14 8.1636 -6.6555 -4.1984 21 1 9.0667 -5.6433 -4.8028 22 1 8.8591 -7.9663 -4.1393 23 1 6.9375 -6.7826 -5.0264 24 6 8.3006 -3.3077 -0.0296 25 6 7.3339 -3.0503 1.1404 26 1 7.8011 -2.5201 1.9703 27 6 6.0574 -2.3606 0.6196 28 8 2.0384 -0.7336 1.1348 29 1 -0.3633 0.5247 0.8837 30 1 -0.3634 0.5029 -0.8962 31 1 -0.3634 -1.0276 0.0126 32 1 1.4605 -1.6615 -1.4250 33 1 2.1541 -0.1474 -2.0940 34 1 4.2433 -0.5279 -1.0957 35 1 3.7037 -2.2350 -1.0279 36 1 5.2303 -4.2734 2.9549 37 1 4.7638 -5.0791 1.4339 38 1 7.3854 -6.2554 0.4215 39 1 5.9642 -5.3967 -0.2286 40 1 6.5504 -7.7024 -2.1039 41 1 8.2670 -2.4744 -0.7313 42 1 9.3152 -3.4383 0.3467 43 1 5.9599 -2.5122 -0.4555 44 1 6.0919 -1.2946 0.8449 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049070293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:09 Heat of formation + Delta-G solvation = -49.760887 kcal Electronic energy + Delta-G solvation = -25003.855606 eV Core-core repulsion = 21535.804462 eV Total energy + Delta-G solvation = -3468.051144 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.56143 -39.31929 -37.70000 -34.93790 -32.56024 -32.35629 -31.79039 -30.21301 -29.43389 -27.06688 -25.52664 -25.22241 -23.24771 -21.98866 -21.35646 -20.11900 -19.44272 -19.20281 -17.35139 -16.85103 -16.49388 -16.17677 -15.49530 -15.25699 -14.57577 -14.22323 -14.04957 -13.90701 -13.66958 -13.17285 -13.04789 -12.75676 -12.49727 -12.44197 -12.08520 -11.98542 -11.83717 -11.55021 -11.49372 -11.44917 -11.04598 -10.96562 -10.89551 -10.86096 -10.43713 -10.13312 -10.10634 -10.06554 -9.88442 -9.66728 -9.30512 -8.64992 -8.32178 -6.88293 -5.76635 -3.10697 2.79294 2.95487 3.36254 3.41788 3.44519 3.85809 4.35969 4.45216 4.51954 4.68316 4.70834 4.82055 4.96968 5.03577 5.15044 5.22396 5.25930 5.37159 5.46653 5.52093 5.56002 5.62808 5.64040 5.67503 5.73624 5.83412 5.88777 5.94747 5.96936 6.01053 6.15259 6.26405 6.35358 6.49982 6.54302 6.58164 6.77669 6.79500 7.52197 7.54106 7.75599 7.77883 8.21041 8.38680 9.16651 9.77699 10.41176 11.34847 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.004486 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.980439 B = 6240.772416 C = 6988.766247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.069 3.931 3 H 0.071 0.929 4 C -0.149 4.149 5 C -0.147 4.147 6 C 0.068 3.932 7 H 0.091 0.909 8 C 0.526 3.474 9 O -0.529 6.529 10 N -0.606 5.606 11 C 0.122 3.878 12 C -0.123 4.123 13 H 0.091 0.909 14 C 0.185 3.815 15 N -0.604 5.604 16 C -0.231 4.231 17 H 0.079 0.921 18 C -0.006 4.006 19 N -0.920 5.920 20 Si 0.911 3.089 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.147 3.853 25 C -0.111 4.111 26 H 0.089 0.911 27 C 0.110 3.890 28 O -0.347 6.347 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.047 0.953 39 H 0.050 0.950 40 H 0.252 0.748 41 H 0.037 0.963 42 H 0.021 0.979 43 H 0.080 0.920 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.579 14.268 3.868 15.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.011 3.989 3 H 0.089 0.911 4 C -0.186 4.186 5 C -0.185 4.185 6 C 0.007 3.993 7 H 0.108 0.892 8 C 0.313 3.687 9 O -0.405 6.405 10 N -0.341 5.341 11 C -0.001 4.001 12 C -0.143 4.143 13 H 0.110 0.890 14 C 0.060 3.940 15 N -0.330 5.330 16 C -0.359 4.359 17 H 0.097 0.903 18 C -0.202 4.202 19 N -0.567 5.567 20 Si 0.741 3.259 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.218 1.218 24 C 0.020 3.980 25 C -0.131 4.131 26 H 0.108 0.892 27 C -0.013 4.013 28 O -0.265 6.265 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.039 0.961 43 H 0.098 0.902 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.294 13.744 4.249 15.703 hybrid contribution 0.473 -0.329 -1.108 1.249 sum -5.821 13.416 3.141 14.958 Atomic orbital electron populations 1.21758 0.92953 1.03278 1.02270 1.23206 0.95483 0.95147 0.85037 0.91079 1.23193 0.95970 1.01038 0.98432 1.22938 0.98464 1.04334 0.92754 1.22503 0.86755 0.94461 0.95595 0.89171 1.20005 0.80971 0.87067 0.80645 1.90698 1.45405 1.62111 1.42299 1.48193 1.09895 1.21285 1.54722 1.21825 0.95407 0.85073 0.97754 1.23163 0.93341 0.96492 1.01284 0.89048 1.21212 0.95381 0.92994 0.84364 1.44362 1.54438 1.20358 1.13872 1.19076 1.24415 1.03536 0.88874 0.90336 1.24797 0.99619 0.97319 0.98509 1.69965 1.36404 1.14442 1.35908 0.86064 0.77571 0.78337 0.83889 1.20499 1.21717 1.21788 1.21141 0.94582 0.90438 0.91831 1.22939 0.95362 0.95955 0.98847 0.89249 1.22182 0.85135 0.96145 0.97821 1.88995 1.26035 1.73221 1.38242 0.91828 0.91081 0.91527 0.90100 0.89804 0.89474 0.89401 0.92272 0.90878 0.93509 0.93179 0.93722 0.94529 0.96098 0.90152 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.67 37.16 0.36 -1.01 16 2 C 0.07 0.75 3.97 -25.68 -0.10 0.65 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.15 -1.58 6.59 -24.72 -0.16 -1.74 16 5 C -0.15 -1.78 5.56 -25.20 -0.14 -1.92 16 6 C 0.07 0.95 3.18 -27.31 -0.09 0.87 16 7 H 0.09 1.05 7.69 -51.93 -0.40 0.65 16 8 C 0.53 9.28 7.01 -10.99 -0.08 9.20 16 9 O -0.53 -11.42 16.84 -14.02 -0.24 -11.66 16 10 N -0.61 -10.13 3.31 -172.17 -0.57 -10.70 16 11 C 0.12 2.12 6.23 -3.57 -0.02 2.10 16 12 C -0.12 -2.16 4.01 -88.60 -0.36 -2.52 16 13 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 14 C 0.19 4.26 4.77 -3.32 -0.02 4.24 16 15 N -0.60 -14.44 3.39 -171.50 -0.58 -15.02 16 16 C -0.23 -6.14 10.25 -15.06 -0.15 -6.30 16 17 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 18 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 19 N -0.92 -26.38 10.25 55.49 0.57 -25.81 16 20 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 C 0.15 2.74 6.41 -3.42 -0.02 2.72 16 25 C -0.11 -1.73 4.14 -88.25 -0.37 -2.09 16 26 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 27 C 0.11 1.63 5.11 -3.29 -0.02 1.61 16 28 O -0.35 -5.24 10.44 -54.80 -0.57 -5.81 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.93 8.06 -51.93 -0.42 0.52 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.27 7.48 -51.93 -0.39 0.88 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.42 7.44 -51.93 -0.39 1.03 16 38 H 0.05 1.22 7.40 -51.93 -0.38 0.83 16 39 H 0.05 1.31 6.58 -51.92 -0.34 0.97 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.04 0.65 7.97 -51.93 -0.41 0.24 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 1.35 7.39 -51.93 -0.38 0.96 16 44 H 0.06 0.75 7.48 -51.93 -0.39 0.36 16 LS Contribution 342.52 15.07 5.16 5.16 Total: -1.00 -32.56 342.52 -9.79 -42.35 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.28 Total: -0.62 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -1.26 Total: 5.56 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.58 Total: -51.53 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.81 Total: -17.47 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.56 -9.79 -42.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049070293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.415 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds