Wall clock time and date at job start Tue Mar 31 2020 06:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.55153 * 2 1 4 4 C 1.55002 * 110.75091 * 237.02828 * 2 1 3 5 5 C 1.54815 * 102.09032 * 204.41120 * 4 2 1 6 6 C 1.54099 * 104.18723 * 20.88011 * 5 4 2 7 7 H 1.09005 * 109.87694 * 242.60562 * 6 5 4 8 8 C 1.50702 * 110.00351 * 121.52900 * 6 5 4 9 9 O 1.21288 * 119.99412 * 245.64001 * 8 6 5 10 10 N 1.34769 * 120.00135 * 65.63454 * 8 6 5 11 11 C 1.46672 * 125.33604 * 180.02562 * 10 8 6 12 12 C 1.53726 * 107.93810 * 180.52527 * 11 10 8 13 13 H 1.09006 * 112.55951 * 139.72180 * 12 11 10 14 14 C 1.53693 * 109.34267 * 266.24698 * 12 11 10 15 15 N 1.47169 * 107.73092 * 128.69564 * 14 12 11 16 16 C 1.36946 * 125.25093 * 180.36810 * 15 14 12 17 17 H 1.08008 * 119.99575 * 179.18095 * 16 15 14 18 18 C 1.38809 * 120.00298 * 359.17904 * 16 15 14 19 19 N 1.31622 * 119.99741 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00072 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47369 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46773 * 120.00379 * 20 18 16 23 23 H 1.48493 * 109.47395 * 240.00122 * 20 18 16 24 24 C 1.46744 * 109.41716 * 359.66028 * 15 14 12 25 25 C 1.53938 * 106.71636 * 342.40336 * 24 15 14 26 26 H 1.08991 * 113.00946 * 150.83123 * 25 24 15 27 27 C 1.46780 * 125.34121 * 359.69958 * 10 8 6 28 28 O 1.43744 * 107.29531 * 2.03003 * 6 5 4 29 29 H 1.09002 * 109.47158 * 300.69937 * 1 2 3 30 30 H 1.09000 * 109.47596 * 60.70332 * 1 2 3 31 31 H 1.09004 * 109.47140 * 180.70104 * 1 2 3 32 32 H 1.08994 * 110.90293 * 322.60474 * 4 2 1 33 33 H 1.08995 * 110.90665 * 86.21355 * 4 2 1 34 34 H 1.08999 * 110.48535 * 262.20553 * 5 4 2 35 35 H 1.08995 * 110.48820 * 139.55812 * 5 4 2 36 36 H 1.08997 * 109.77204 * 300.13996 * 11 10 8 37 37 H 1.08996 * 109.77089 * 60.90385 * 11 10 8 38 38 H 1.09001 * 109.76661 * 247.20371 * 14 12 11 39 39 H 1.09008 * 109.75608 * 7.92148 * 14 12 11 40 40 H 0.96997 * 119.99503 * 179.97438 * 19 18 16 41 41 H 1.08991 * 110.00970 * 223.09178 * 24 15 14 42 42 H 1.09001 * 110.00758 * 101.71423 * 24 15 14 43 43 H 1.09005 * 110.02434 * 280.79767 * 27 10 8 44 44 H 1.09002 * 110.02684 * 42.20774 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0791 -0.7888 -1.2160 5 6 3.4831 -1.2129 -0.7202 6 6 3.3852 -1.1210 0.8149 7 1 4.0845 -0.3721 1.1867 8 6 3.6934 -2.4608 1.4323 9 8 2.8291 -3.0661 2.0303 10 7 4.9294 -2.9862 1.3198 11 6 5.3562 -4.2761 1.8722 12 6 6.8399 -4.4735 1.5218 13 1 7.4088 -4.9112 2.3422 14 6 6.9521 -5.2765 0.2161 15 7 7.8472 -4.5378 -0.6888 16 6 8.1906 -4.9304 -1.9551 17 1 8.8463 -4.3141 -2.5523 18 6 7.6959 -6.1204 -2.4710 19 7 6.8963 -6.8711 -1.7432 20 14 8.1636 -6.6555 -4.1984 21 1 9.0667 -5.6433 -4.8028 22 1 8.8591 -7.9663 -4.1393 23 1 6.9375 -6.7826 -5.0264 24 6 8.3006 -3.3077 -0.0296 25 6 7.3339 -3.0503 1.1404 26 1 7.8011 -2.5201 1.9703 27 6 6.0574 -2.3606 0.6196 28 8 2.0384 -0.7336 1.1348 29 1 -0.3633 0.5247 0.8837 30 1 -0.3634 0.5029 -0.8962 31 1 -0.3634 -1.0276 0.0126 32 1 1.4605 -1.6615 -1.4250 33 1 2.1541 -0.1474 -2.0940 34 1 4.2433 -0.5279 -1.0957 35 1 3.7037 -2.2350 -1.0279 36 1 5.2303 -4.2734 2.9549 37 1 4.7638 -5.0791 1.4339 38 1 7.3854 -6.2554 0.4215 39 1 5.9642 -5.3967 -0.2286 40 1 6.5504 -7.7024 -2.1039 41 1 8.2670 -2.4744 -0.7313 42 1 9.3152 -3.4383 0.3467 43 1 5.9599 -2.5122 -0.4555 44 1 6.0919 -1.2946 0.8449 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049070293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:08 Heat of formation + Delta-G solvation = -70.606083 kcal Electronic energy + Delta-G solvation = -25004.759522 eV Core-core repulsion = 21535.804462 eV Total energy + Delta-G solvation = -3468.955060 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.82515 -40.53239 -39.09022 -36.58795 -34.21649 -33.32182 -33.00668 -31.59146 -31.08359 -28.27146 -27.07044 -26.80796 -24.65936 -23.12650 -22.21351 -21.77814 -20.83046 -20.55890 -18.88465 -18.36766 -17.64100 -17.40733 -16.85776 -16.60429 -16.27290 -15.56204 -15.48429 -15.11935 -14.85191 -14.60103 -14.38880 -14.19742 -13.68190 -13.57232 -13.33707 -13.26556 -13.24973 -13.09463 -12.76022 -12.68440 -12.67733 -12.47443 -11.96962 -11.91806 -11.88530 -11.83158 -11.81709 -11.50185 -11.35313 -11.13941 -10.71829 -10.51430 -9.70694 -8.85728 -7.83883 -5.18515 1.45941 1.46373 1.46721 1.56966 1.73833 2.50429 2.86441 3.23525 3.35468 3.45305 3.55390 3.64216 3.78996 3.84049 3.89711 3.96123 4.16949 4.23576 4.29028 4.32045 4.42349 4.52531 4.53830 4.58088 4.71316 4.77483 4.83944 4.86501 4.92696 4.93094 4.96503 5.07693 5.11372 5.13365 5.21724 5.26845 5.41698 5.50833 5.63578 5.78471 5.85716 6.21941 6.44870 7.03806 7.11867 7.81841 8.43499 9.26528 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.004486 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.980439 B = 6240.772416 C = 6988.766247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.064 3.936 3 H 0.101 0.899 4 C -0.147 4.147 5 C -0.144 4.144 6 C 0.073 3.927 7 H 0.126 0.874 8 C 0.517 3.483 9 O -0.582 6.582 10 N -0.605 5.605 11 C 0.124 3.876 12 C -0.112 4.112 13 H 0.114 0.886 14 C 0.199 3.801 15 N -0.624 5.624 16 C -0.233 4.233 17 H 0.089 0.911 18 C -0.068 4.068 19 N -0.954 5.954 20 Si 0.973 3.027 21 H -0.260 1.260 22 H -0.296 1.296 23 H -0.298 1.298 24 C 0.140 3.860 25 C -0.093 4.093 26 H 0.136 0.864 27 C 0.110 3.890 28 O -0.381 6.381 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.004 0.996 39 H 0.006 0.994 40 H 0.243 0.757 41 H 0.053 0.947 42 H 0.032 0.968 43 H 0.058 0.942 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.237 18.085 3.747 18.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.007 3.993 3 H 0.119 0.881 4 C -0.185 4.185 5 C -0.182 4.182 6 C 0.012 3.988 7 H 0.144 0.856 8 C 0.306 3.694 9 O -0.461 6.461 10 N -0.338 5.338 11 C 0.001 3.999 12 C -0.132 4.132 13 H 0.132 0.868 14 C 0.074 3.926 15 N -0.350 5.350 16 C -0.362 4.362 17 H 0.106 0.894 18 C -0.261 4.261 19 N -0.603 5.603 20 Si 0.802 3.198 21 H -0.184 1.184 22 H -0.224 1.224 23 H -0.225 1.225 24 C 0.015 3.985 25 C -0.113 4.113 26 H 0.154 0.846 27 C -0.011 4.011 28 O -0.300 6.300 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.055 0.945 38 H 0.022 0.978 39 H 0.024 0.976 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.077 0.923 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.905 17.617 4.118 18.745 hybrid contribution 0.060 -1.520 -1.080 1.865 sum -4.845 16.097 3.039 17.082 Atomic orbital electron populations 1.21806 0.92370 1.02313 1.03770 1.23519 0.96116 0.96020 0.83621 0.88079 1.23224 0.94680 1.00877 0.99675 1.22962 1.00339 1.03231 0.91645 1.22636 0.87277 0.92614 0.96268 0.85626 1.20903 0.80358 0.88308 0.79824 1.90663 1.46864 1.63869 1.44751 1.48281 1.10462 1.20783 1.54299 1.21690 0.94804 0.84977 0.98426 1.22994 0.93862 0.97491 0.98847 0.86801 1.20822 0.92598 0.92434 0.86742 1.44658 1.54467 1.22406 1.13515 1.19510 1.23359 1.03236 0.90125 0.89357 1.25607 1.00367 0.97949 1.02130 1.70214 1.38116 1.14577 1.37424 0.85077 0.77046 0.77859 0.79798 1.18410 1.22364 1.22527 1.21386 0.95582 0.88551 0.92970 1.23014 0.94914 0.94520 0.98822 0.84603 1.22295 0.83881 0.98598 0.96369 1.88974 1.26744 1.73993 1.40288 0.91616 0.88314 0.93701 0.92199 0.86653 0.86107 0.92767 0.90626 0.94461 0.97761 0.97631 0.94791 0.92917 0.95018 0.92341 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.67 71.98 0.70 -1.82 16 2 C 0.06 1.24 3.97 31.28 0.12 1.36 16 3 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 4 C -0.15 -2.83 6.59 31.90 0.21 -2.62 16 5 C -0.14 -3.19 5.56 31.59 0.18 -3.01 16 6 C 0.07 1.88 3.18 30.22 0.10 1.98 16 7 H 0.13 2.35 7.69 -2.38 -0.02 2.33 16 8 C 0.52 18.11 7.01 87.66 0.61 18.72 16 9 O -0.58 -25.98 16.84 15.65 0.26 -25.71 16 10 N -0.60 -19.68 3.31 -817.00 -2.71 -22.39 16 11 C 0.12 4.37 6.23 86.59 0.54 4.91 16 12 C -0.11 -3.85 4.01 -9.49 -0.04 -3.89 16 13 H 0.11 3.43 8.14 -2.38 -0.02 3.41 16 14 C 0.20 9.55 4.77 86.49 0.41 9.96 16 15 N -0.62 -29.88 3.39 -696.49 -2.36 -32.24 16 16 C -0.23 -12.45 10.25 84.03 0.86 -11.59 16 17 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 18 C -0.07 -3.80 5.48 84.86 0.47 -3.33 16 19 N -0.95 -57.61 10.25 21.65 0.22 -57.38 16 20 Si 0.97 45.18 29.55 68.60 2.03 47.21 16 21 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 23 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 24 C 0.14 4.84 6.41 86.65 0.56 5.40 16 25 C -0.09 -2.56 4.14 -9.26 -0.04 -2.60 16 26 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 27 C 0.11 2.94 5.11 86.72 0.44 3.38 16 28 O -0.38 -11.03 10.44 -130.27 -1.36 -12.39 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.06 1.39 8.06 -2.39 -0.02 1.37 16 33 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.12 1.84 8.14 -2.39 -0.02 1.83 16 35 H 0.05 1.57 7.48 -2.39 -0.02 1.55 16 36 H 0.08 2.42 8.14 -2.39 -0.02 2.41 16 37 H 0.04 1.57 7.44 -2.39 -0.02 1.55 16 38 H 0.00 0.23 7.40 -2.39 -0.02 0.21 16 39 H 0.01 0.31 6.58 -2.38 -0.02 0.29 16 40 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 41 H 0.05 1.68 7.97 -2.39 -0.02 1.66 16 42 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.06 1.85 7.39 -2.38 -0.02 1.84 16 44 H 0.11 1.98 7.48 -2.39 -0.02 1.96 16 Total: -1.00 -77.04 342.52 2.18 -74.87 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.97 Total: 11.19 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: 5.12 Total: 16.84 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -4.84 Total: -112.01 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -1.10 Total: -38.10 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -77.04 2.18 -74.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049070293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.260 kcal (2) G-P(sol) polarization free energy of solvation -77.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds