Wall clock time and date at job start Tue Mar 31 2020 07:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.41797 * 2 1 4 4 O 1.44426 * 110.37514 * 122.30844 * 2 1 3 5 5 C 1.44424 * 105.27449 * 159.34388 * 4 2 1 6 6 C 1.54485 * 104.80448 * 319.48813 * 5 4 2 7 7 C 1.54475 * 110.37116 * 237.69108 * 2 1 3 8 8 H 1.08998 * 110.62843 * 335.88982 * 7 2 1 9 9 C 1.50703 * 110.51075 * 98.54588 * 7 2 1 10 10 O 1.21277 * 120.00165 * 356.09023 * 9 7 2 11 11 N 1.34778 * 119.99910 * 176.09525 * 9 7 2 12 12 C 1.46754 * 125.33523 * 359.95862 * 11 9 7 13 13 C 1.53982 * 106.67672 * 198.48305 * 12 11 9 14 14 H 1.08998 * 113.34942 * 94.44792 * 13 12 11 15 15 C 1.53675 * 109.29846 * 221.16090 * 13 12 11 16 16 N 1.46666 * 107.97000 * 93.06730 * 15 13 12 17 17 C 1.36931 * 125.33569 * 179.31774 * 16 15 13 18 18 H 1.07997 * 119.99807 * 349.97764 * 17 16 15 19 19 C 1.38812 * 119.99887 * 169.98837 * 17 16 15 20 20 N 1.31611 * 120.00149 * 350.53145 * 19 17 16 21 21 Si 1.86796 * 119.99779 * 170.53355 * 19 17 16 22 22 H 1.48508 * 109.47280 * 94.62613 * 21 19 17 23 23 H 1.48505 * 109.47270 * 214.62374 * 21 19 17 24 24 H 1.48503 * 109.47662 * 334.62662 * 21 19 17 25 25 C 1.46762 * 109.32632 * 359.29360 * 16 15 13 26 26 C 1.53975 * 106.68103 * 18.44635 * 25 16 15 27 27 H 1.09005 * 112.79770 * 94.85361 * 26 25 16 28 28 C 1.46656 * 125.33592 * 179.97438 * 11 9 7 29 29 H 1.09004 * 109.46792 * 182.31468 * 1 2 3 30 30 H 1.09010 * 109.46984 * 302.30459 * 1 2 3 31 31 H 1.08989 * 109.47503 * 62.31087 * 1 2 3 32 32 H 1.09007 * 110.37260 * 200.66039 * 5 4 2 33 33 H 1.08996 * 110.37639 * 78.32495 * 5 4 2 34 34 H 1.08996 * 110.51057 * 265.33514 * 6 5 4 35 35 H 1.08993 * 110.50972 * 142.62651 * 6 5 4 36 36 H 1.09002 * 110.01692 * 317.78563 * 12 11 9 37 37 H 1.09001 * 110.01994 * 79.12991 * 12 11 9 38 38 H 1.09006 * 109.76977 * 333.44224 * 15 13 12 39 39 H 1.09001 * 109.77226 * 212.69662 * 15 13 12 40 40 H 0.97005 * 120.00021 * 179.97438 * 20 19 17 41 41 H 1.09003 * 110.01534 * 137.75754 * 25 16 15 42 42 H 1.09003 * 110.01450 * 259.14065 * 25 16 15 43 43 H 1.09000 * 109.76668 * 59.62429 * 28 11 9 44 44 H 1.08998 * 109.76590 * 298.88897 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 8 2.0328 -0.7236 1.1443 5 6 3.3874 -1.0870 0.7994 6 6 3.3178 -1.5056 -0.6860 7 6 2.0677 -0.7740 -1.2239 8 1 1.3285 -1.4918 -1.5794 9 6 2.4481 0.1802 -2.3266 10 8 2.2444 1.3687 -2.1973 11 7 3.0148 -0.2873 -3.4566 12 6 3.3140 -1.6967 -3.7359 13 6 4.3465 -1.7112 -4.8781 14 1 5.3772 -1.7683 -4.5281 15 6 3.9921 -2.8312 -5.8689 16 7 3.1578 -2.2520 -6.9270 17 6 2.6534 -2.9353 -8.0011 18 1 2.9899 -3.9404 -8.2081 19 6 1.7099 -2.3359 -8.8241 20 7 1.1622 -1.1919 -8.4730 21 14 1.2176 -3.1531 -10.4301 22 1 -0.0005 -3.9748 -10.2144 23 1 0.9374 -2.1110 -11.4503 24 1 2.3243 -4.0234 -10.9024 25 6 2.9478 -0.8254 -6.6538 26 6 4.0410 -0.4009 -5.6559 27 1 4.9149 0.0298 -6.1448 28 6 3.4292 0.5326 -4.5997 29 1 -0.3633 -1.0269 0.0415 30 1 -0.3633 0.5493 0.8687 31 1 -0.3634 0.4775 -0.9099 32 1 3.7242 -1.9223 1.4136 33 1 4.0525 -0.2323 0.9221 34 1 3.1956 -2.5852 -0.7732 35 1 4.2109 -1.1773 -1.2175 36 1 3.7323 -2.1721 -2.8487 37 1 2.4072 -2.2165 -4.0450 38 1 3.4407 -3.6181 -5.3540 39 1 4.9038 -3.2426 -6.3020 40 1 0.5031 -0.7728 -9.0483 41 1 3.0408 -0.2513 -7.5757 42 1 1.9620 -0.6707 -6.2153 43 1 4.1719 1.2633 -4.2793 44 1 2.5636 1.0460 -5.0183 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049138484.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:55 Heat of formation + Delta-G solvation = -72.782046 kcal Electronic energy + Delta-G solvation = -24950.612277 eV Core-core repulsion = 21481.562860 eV Total energy + Delta-G solvation = -3469.049416 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.94719 -40.54997 -39.10884 -36.66044 -34.28532 -33.58805 -32.55633 -31.58345 -31.20094 -27.98829 -27.07863 -26.90714 -24.71046 -23.16518 -22.55464 -21.93256 -20.77449 -20.40418 -18.85617 -18.17313 -17.74278 -17.00519 -16.80028 -16.54133 -16.38268 -15.83249 -15.54881 -15.41419 -14.87122 -14.64205 -14.49791 -14.08457 -13.60303 -13.55228 -13.46977 -13.39209 -13.25355 -13.17800 -12.80038 -12.72220 -12.60898 -12.22597 -12.11679 -11.98054 -11.91312 -11.87002 -11.74641 -11.55182 -11.36738 -11.00937 -10.72403 -10.63985 -9.71268 -8.84691 -7.88847 -5.23369 1.46025 1.46893 1.47128 1.56765 1.88838 2.49471 2.81841 3.27298 3.32533 3.47558 3.48754 3.59965 3.67421 3.87725 3.94132 4.03714 4.14206 4.22660 4.27737 4.31813 4.36638 4.52283 4.55788 4.59595 4.65053 4.71919 4.82482 4.84619 4.89794 4.92445 4.99047 5.00230 5.02773 5.10467 5.17763 5.21062 5.40900 5.48158 5.59095 5.72586 5.80911 6.20498 6.44697 7.00437 7.09207 7.79239 8.41870 9.22766 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024999 B = 0.003822 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.763840 B = 7323.505055 C = 7520.265314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.087 3.913 3 H 0.068 0.932 4 O -0.384 6.384 5 C 0.042 3.958 6 C -0.142 4.142 7 C -0.135 4.135 8 H 0.118 0.882 9 C 0.532 3.468 10 O -0.581 6.581 11 N -0.606 5.606 12 C 0.108 3.892 13 C -0.090 4.090 14 H 0.136 0.864 15 C 0.138 3.862 16 N -0.623 5.623 17 C -0.242 4.242 18 H 0.084 0.916 19 C -0.063 4.063 20 N -0.950 5.950 21 Si 0.974 3.026 22 H -0.288 1.288 23 H -0.297 1.297 24 H -0.265 1.265 25 C 0.196 3.804 26 C -0.111 4.111 27 H 0.112 0.888 28 C 0.124 3.876 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.121 0.879 33 H 0.061 0.939 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.051 0.949 38 H 0.032 0.968 39 H 0.039 0.961 40 H 0.246 0.754 41 H 0.016 0.984 42 H -0.005 1.005 43 H 0.079 0.921 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.611 -2.103 17.031 18.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.029 3.971 3 H 0.086 0.914 4 O -0.304 6.304 5 C -0.035 4.035 6 C -0.180 4.180 7 C -0.156 4.156 8 H 0.136 0.864 9 C 0.322 3.678 10 O -0.462 6.462 11 N -0.338 5.338 12 C -0.014 4.014 13 C -0.109 4.109 14 H 0.154 0.846 15 C 0.013 3.987 16 N -0.349 5.349 17 C -0.371 4.371 18 H 0.102 0.898 19 C -0.257 4.257 20 N -0.598 5.598 21 Si 0.803 3.197 22 H -0.215 1.215 23 H -0.224 1.224 24 H -0.190 1.190 25 C 0.071 3.929 26 C -0.131 4.131 27 H 0.131 0.869 28 C 0.001 3.999 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.139 0.861 33 H 0.079 0.921 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.133 0.867 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.035 0.965 42 H 0.013 0.987 43 H 0.097 0.903 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.221 -1.496 17.206 18.720 hybrid contribution -0.849 0.122 -1.701 1.905 sum 6.372 -1.374 15.505 16.820 Atomic orbital electron populations 1.21771 0.92214 1.03393 1.02691 1.22801 0.96172 0.95144 0.82992 0.91446 1.89118 1.28406 1.74706 1.38153 1.23611 0.83749 1.01092 0.95001 1.23079 0.95985 1.02556 0.96350 1.22731 1.01239 0.97624 0.94017 0.86441 1.20484 0.76200 0.88738 0.82352 1.90662 1.56248 1.18521 1.80766 1.48303 1.60062 1.09549 1.15871 1.22343 0.98276 0.81201 0.99552 1.22845 1.00467 0.93781 0.93852 0.84620 1.21328 0.93995 0.94701 0.88714 1.44539 1.59377 1.05910 1.25087 1.19421 1.17029 0.98662 1.02028 0.89832 1.25639 0.98566 0.98512 1.02942 1.70183 1.31226 1.20181 1.38251 0.85133 0.78150 0.77142 0.79320 1.21500 1.22356 1.18992 1.20823 0.92960 0.84689 0.94475 1.23026 0.99149 0.95536 0.95380 0.86948 1.21620 0.98674 0.93830 0.85792 0.90824 0.90960 0.91873 0.86127 0.92066 0.87020 0.89178 0.86705 0.93101 0.94973 0.94318 0.94530 0.96546 0.98715 0.90260 0.94013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.52 71.98 0.69 -2.48 16 2 C 0.09 2.10 3.25 31.09 0.10 2.20 16 3 H 0.07 1.90 6.96 -2.38 -0.02 1.88 16 4 O -0.38 -8.69 11.34 -148.98 -1.69 -10.38 16 5 C 0.04 0.67 7.63 72.49 0.55 1.22 16 6 C -0.14 -2.22 4.91 31.61 0.16 -2.07 16 7 C -0.13 -3.07 2.53 -10.52 -0.03 -3.10 16 8 H 0.12 2.55 7.88 -2.39 -0.02 2.53 16 9 C 0.53 16.15 7.03 87.66 0.62 16.77 16 10 O -0.58 -21.85 15.79 -3.02 -0.05 -21.90 16 11 N -0.61 -18.04 3.28 -817.56 -2.68 -20.72 16 12 C 0.11 2.78 5.64 86.66 0.49 3.27 16 13 C -0.09 -2.45 4.10 -9.41 -0.04 -2.49 16 14 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 15 C 0.14 4.88 6.58 86.57 0.57 5.45 16 16 N -0.62 -30.25 3.38 -697.69 -2.36 -32.61 16 17 C -0.24 -13.13 10.21 84.03 0.86 -12.28 16 18 H 0.08 4.30 7.85 -2.91 -0.02 4.27 16 19 C -0.06 -3.54 5.40 84.86 0.46 -3.09 16 20 N -0.95 -57.15 10.62 21.65 0.23 -56.92 16 21 Si 0.97 45.10 29.56 68.60 2.03 47.13 16 22 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 C 0.20 9.29 4.58 86.66 0.40 9.68 16 26 C -0.11 -3.70 4.10 -9.41 -0.04 -3.74 16 27 H 0.11 3.35 8.14 -2.38 -0.02 3.33 16 28 C 0.12 4.05 6.19 86.57 0.54 4.58 16 29 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.12 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.11 1.26 8.01 -2.39 -0.02 1.24 16 35 H 0.09 1.33 6.90 -2.39 -0.02 1.32 16 36 H 0.12 1.99 5.33 -2.39 -0.01 1.98 16 37 H 0.05 1.59 7.57 -2.39 -0.02 1.57 16 38 H 0.03 1.12 7.63 -2.38 -0.02 1.10 16 39 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 41 H 0.02 0.89 7.23 -2.39 -0.02 0.87 16 42 H -0.01 -0.28 7.23 -2.39 -0.02 -0.30 16 43 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.04 1.62 7.62 -2.39 -0.02 1.60 16 Total: -1.00 -71.94 338.75 1.78 -70.16 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.98 Total: 11.31 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 5.31 Total: 13.93 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -4.81 Total: -110.25 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -1.74 Total: -32.28 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -71.94 1.78 -70.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049138484.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.622 kcal (2) G-P(sol) polarization free energy of solvation -71.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds