Wall clock time and date at job start Tue Mar 31 2020 07:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.33188 * 2 1 4 4 O 1.44430 * 110.37186 * 237.62785 * 2 1 3 5 5 C 1.44426 * 105.27337 * 200.65540 * 4 2 1 6 6 C 1.54475 * 104.80494 * 40.51591 * 5 4 2 7 7 C 1.54481 * 110.37389 * 122.25075 * 2 1 3 8 8 H 1.08998 * 110.51208 * 261.59177 * 7 2 1 9 9 C 1.50697 * 110.51085 * 24.16278 * 7 2 1 10 10 O 1.21279 * 119.99997 * 80.65260 * 9 7 2 11 11 N 1.34775 * 120.00241 * 260.64715 * 9 7 2 12 12 C 1.48706 * 125.14476 * 0.15215 * 11 9 7 13 13 C 1.53981 * 105.70353 * 198.43402 * 12 11 9 14 14 H 1.09001 * 112.79916 * 94.38650 * 13 12 11 15 15 C 1.53675 * 109.29484 * 220.69189 * 13 12 11 16 16 N 1.46658 * 107.96784 * 93.79116 * 15 13 12 17 17 C 1.36937 * 125.33427 * 179.29186 * 16 15 13 18 18 H 1.08007 * 120.00013 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00449 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00029 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00632 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47095 * 59.99824 * 21 19 17 23 23 H 1.48493 * 109.47647 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47026 * 300.00653 * 21 19 17 25 25 C 1.46757 * 109.33515 * 359.29370 * 16 15 13 26 26 C 1.53977 * 106.67549 * 18.44489 * 25 16 15 27 27 H 1.09003 * 112.25291 * 93.84736 * 26 25 16 28 28 C 1.46665 * 125.33651 * 180.02562 * 11 9 7 29 29 H 1.09005 * 109.46916 * 293.16822 * 1 2 3 30 30 H 1.08996 * 109.47479 * 53.17216 * 1 2 3 31 31 H 1.09000 * 109.46831 * 173.17686 * 1 2 3 32 32 H 1.09003 * 110.36880 * 159.34463 * 5 4 2 33 33 H 1.09004 * 110.37312 * 281.68139 * 5 4 2 34 34 H 1.09004 * 110.50985 * 217.37328 * 6 5 4 35 35 H 1.09003 * 110.51100 * 94.66117 * 6 5 4 36 36 H 1.09000 * 110.28775 * 79.55217 * 12 11 9 37 37 H 1.09000 * 110.69335 * 317.53838 * 12 11 9 38 38 H 1.09000 * 109.76629 * 213.41911 * 15 13 12 39 39 H 1.09004 * 109.77132 * 334.14852 * 15 13 12 40 40 H 0.96997 * 120.00321 * 180.02562 * 20 19 17 41 41 H 1.09001 * 110.01913 * 137.75438 * 25 16 15 42 42 H 1.09000 * 110.01536 * 259.09699 * 25 16 15 43 43 H 1.08997 * 109.76594 * 59.66052 * 28 11 9 44 44 H 1.09007 * 109.76514 * 298.92429 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 8 2.0328 -0.7249 -1.1435 5 6 3.3874 -1.0880 -0.7983 6 6 3.3178 -1.5050 0.6874 7 6 2.0678 -0.7728 1.2247 8 1 2.3407 -0.0820 2.0225 9 6 1.0444 -1.7648 1.7142 10 8 0.9235 -2.8357 1.1581 11 7 0.2635 -1.4619 2.7701 12 6 0.3121 -0.1863 3.5328 13 6 -0.3839 -0.4766 4.8753 14 1 0.3167 -0.7545 5.6628 15 6 -1.2660 0.7217 5.2595 16 7 -2.6235 0.4593 4.7704 17 6 -3.6985 1.2920 4.9327 18 1 -3.5816 2.2288 5.4573 19 6 -4.9382 0.9325 4.4220 20 7 -5.0806 -0.2089 3.7823 21 14 -6.4044 2.0687 4.6427 22 1 -6.1179 3.3769 4.0012 23 1 -7.6024 1.4592 4.0115 24 1 -6.6587 2.2730 6.0915 25 6 -2.6494 -0.8353 4.0799 26 6 -1.3972 -1.6055 4.5378 27 1 -1.6023 -2.2608 5.3844 28 6 -0.7656 -2.3362 3.3426 29 1 -0.3633 0.4043 0.9448 30 1 -0.3634 0.6160 -0.8225 31 1 -0.3633 -1.0204 -0.1221 32 1 3.7241 -1.9238 -1.4116 33 1 4.0525 -0.2333 -0.9219 34 1 4.2110 -1.1760 1.2186 35 1 3.1955 -2.5845 0.7758 36 1 -0.2246 0.5958 2.9958 37 1 1.3438 0.1200 3.7058 38 1 -1.2804 0.8363 6.3434 39 1 -0.8766 1.6292 4.7981 40 1 -5.9468 -0.4599 3.4251 41 1 -3.5483 -1.3871 4.3550 42 1 -2.6210 -0.6833 3.0009 43 1 -0.3120 -3.2688 3.6781 44 1 -1.5292 -2.5462 2.5936 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049138485.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:58 Heat of formation + Delta-G solvation = -47.341551 kcal Electronic energy + Delta-G solvation = -25268.882841 eV Core-core repulsion = 21800.936608 eV Total energy + Delta-G solvation = -3467.946234 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.73786 -39.27602 -37.68592 -34.93839 -32.75867 -32.13744 -31.56417 -30.21909 -29.51427 -26.67113 -25.53682 -25.41650 -23.30836 -22.18736 -21.54860 -20.22743 -19.28816 -18.68279 -17.53621 -16.85351 -16.27359 -16.00752 -15.62174 -15.50055 -14.77105 -14.50021 -14.30304 -13.78019 -13.37900 -13.36692 -12.85045 -12.65402 -12.33921 -12.25619 -12.11731 -11.99622 -11.80607 -11.70079 -11.42698 -11.25281 -11.10994 -10.99427 -10.93713 -10.82174 -10.48296 -10.15863 -10.09646 -9.93932 -9.86053 -9.61874 -9.48830 -8.66545 -8.38613 -6.89209 -5.72217 -3.12094 2.73928 3.12706 3.37608 3.42198 3.43772 3.78246 4.32560 4.44251 4.47016 4.66081 4.80313 4.90107 4.93348 5.04577 5.12638 5.25721 5.29125 5.36010 5.46267 5.48714 5.52862 5.59464 5.60437 5.65772 5.77755 5.86011 5.91630 5.94933 5.97795 6.14984 6.22783 6.29233 6.35212 6.49315 6.51474 6.61028 6.75827 6.79119 7.46141 7.58449 7.70593 7.79130 8.28133 8.35025 9.17537 9.78218 10.40834 11.33732 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023506 B = 0.004225 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.922660 B = 6625.305822 C = 7033.378405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.092 3.908 3 H 0.079 0.921 4 O -0.364 6.364 5 C 0.048 3.952 6 C -0.141 4.141 7 C -0.142 4.142 8 H 0.101 0.899 9 C 0.540 3.460 10 O -0.541 6.541 11 N -0.610 5.610 12 C 0.109 3.891 13 C -0.110 4.110 14 H 0.088 0.912 15 C 0.145 3.855 16 N -0.602 5.602 17 C -0.230 4.230 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.170 3.830 26 C -0.121 4.121 27 H 0.092 0.908 28 C 0.123 3.877 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.254 0.746 41 H 0.093 0.907 42 H 0.019 0.981 43 H 0.059 0.941 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.599 -0.307 -2.684 16.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.033 3.967 3 H 0.097 0.903 4 O -0.283 6.283 5 C -0.029 4.029 6 C -0.179 4.179 7 C -0.163 4.163 8 H 0.120 0.880 9 C 0.328 3.672 10 O -0.418 6.418 11 N -0.344 5.344 12 C -0.013 4.013 13 C -0.130 4.130 14 H 0.106 0.894 15 C 0.019 3.981 16 N -0.328 5.328 17 C -0.358 4.358 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.568 5.568 21 Si 0.744 3.256 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.045 3.955 26 C -0.141 4.141 27 H 0.110 0.890 28 C 0.000 4.000 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.064 0.936 41 H 0.111 0.889 42 H 0.037 0.963 43 H 0.077 0.923 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 16.213 -0.943 -3.308 16.574 hybrid contribution -0.624 0.752 0.395 1.053 sum 15.590 -0.192 -2.913 15.860 Atomic orbital electron populations 1.21978 0.92353 1.03932 1.03289 1.22844 0.96032 0.94551 0.83237 0.90342 1.89192 1.26912 1.74446 1.37775 1.23358 0.84839 0.99716 0.94942 1.22942 0.96064 1.02723 0.96212 1.22804 0.95632 0.97851 1.00043 0.88045 1.19747 0.81311 0.87428 0.78695 1.90685 1.69871 1.24928 1.56339 1.48794 1.36692 1.18312 1.30583 1.22566 1.00126 0.86374 0.92222 1.22790 0.97017 0.97532 0.95616 0.89399 1.21073 0.86273 0.93866 0.96894 1.44234 1.03660 1.19765 1.65126 1.18997 0.86559 0.99448 1.30789 0.90457 1.24790 0.97734 0.97593 1.00151 1.69855 1.23286 1.21892 1.41793 0.86174 0.82070 0.79699 0.77654 1.21181 1.21552 1.21130 1.21524 0.93795 0.85781 0.94399 1.23205 0.97818 0.96531 0.96559 0.88982 1.21681 0.89900 0.92671 0.95719 0.90364 0.91420 0.91115 0.88966 0.92315 0.90133 0.89129 0.90427 0.91287 0.95707 0.95766 0.93584 0.88897 0.96262 0.92293 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 8.57 37.16 0.32 -2.00 16 2 C 0.09 1.17 3.83 -25.95 -0.10 1.07 16 3 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 4 O -0.36 -5.19 11.34 -35.23 -0.40 -5.59 16 5 C 0.05 0.51 7.63 37.93 0.29 0.80 16 6 C -0.14 -1.51 6.59 -25.16 -0.17 -1.67 16 7 C -0.14 -1.74 3.09 -90.20 -0.28 -2.01 16 8 H 0.10 1.00 6.46 -51.93 -0.34 0.67 16 9 C 0.54 8.59 4.78 -10.99 -0.05 8.53 16 10 O -0.54 -10.50 16.04 5.56 0.09 -10.42 16 11 N -0.61 -9.53 3.17 -170.74 -0.54 -10.07 16 12 C 0.11 1.53 5.54 -2.31 -0.01 1.52 16 13 C -0.11 -1.70 4.04 -88.48 -0.36 -2.05 16 14 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 15 C 0.15 2.74 6.59 -3.61 -0.02 2.72 16 16 N -0.60 -14.50 3.38 -171.89 -0.58 -15.08 16 17 C -0.23 -6.15 10.25 -15.06 -0.15 -6.31 16 18 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 19 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 20 N -0.92 -26.23 10.16 55.49 0.56 -25.67 16 21 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.17 3.90 4.91 -3.39 -0.02 3.88 16 26 C -0.12 -2.13 4.05 -88.48 -0.36 -2.48 16 27 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 28 C 0.12 2.06 6.22 -3.60 -0.02 2.04 16 29 H 0.08 1.17 6.42 -51.93 -0.33 0.83 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.22 7.13 -51.93 -0.37 0.85 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 1.14 7.03 -51.93 -0.36 0.77 16 36 H 0.08 1.21 6.43 -51.93 -0.33 0.87 16 37 H 0.07 0.75 6.98 -51.93 -0.36 0.39 16 38 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.02 0.45 7.62 -51.93 -0.40 0.05 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.09 2.45 6.19 -51.93 -0.32 2.12 16 42 H 0.02 0.49 7.61 -51.93 -0.40 0.10 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 1.34 7.67 -51.93 -0.40 0.95 16 LS Contribution 335.51 15.07 5.06 5.06 Total: -1.00 -31.71 335.51 -8.83 -40.54 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.96 Total: 0.91 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -1.03 Total: 3.75 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.56 Total: -50.81 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.31 Total: -16.01 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.71 -8.83 -40.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049138485.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.803 kcal (2) G-P(sol) polarization free energy of solvation -31.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds