Wall clock time and date at job start Tue Mar 31 2020 07:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.33188 * 2 1 4 4 O 1.44430 * 110.37186 * 237.62785 * 2 1 3 5 5 C 1.44426 * 105.27337 * 200.65540 * 4 2 1 6 6 C 1.54475 * 104.80494 * 40.51591 * 5 4 2 7 7 C 1.54481 * 110.37389 * 122.25075 * 2 1 3 8 8 H 1.08998 * 110.51208 * 261.59177 * 7 2 1 9 9 C 1.50697 * 110.51085 * 24.16278 * 7 2 1 10 10 O 1.21279 * 119.99997 * 80.65260 * 9 7 2 11 11 N 1.34775 * 120.00241 * 260.64715 * 9 7 2 12 12 C 1.48706 * 125.14476 * 0.15215 * 11 9 7 13 13 C 1.53981 * 105.70353 * 198.43402 * 12 11 9 14 14 H 1.09001 * 112.79916 * 94.38650 * 13 12 11 15 15 C 1.53675 * 109.29484 * 220.69189 * 13 12 11 16 16 N 1.46658 * 107.96784 * 93.79116 * 15 13 12 17 17 C 1.36937 * 125.33427 * 179.29186 * 16 15 13 18 18 H 1.08007 * 120.00013 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00449 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00029 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00632 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47095 * 59.99824 * 21 19 17 23 23 H 1.48493 * 109.47647 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47026 * 300.00653 * 21 19 17 25 25 C 1.46757 * 109.33515 * 359.29370 * 16 15 13 26 26 C 1.53977 * 106.67549 * 18.44489 * 25 16 15 27 27 H 1.09003 * 112.25291 * 93.84736 * 26 25 16 28 28 C 1.46665 * 125.33651 * 180.02562 * 11 9 7 29 29 H 1.09005 * 109.46916 * 293.16822 * 1 2 3 30 30 H 1.08996 * 109.47479 * 53.17216 * 1 2 3 31 31 H 1.09000 * 109.46831 * 173.17686 * 1 2 3 32 32 H 1.09003 * 110.36880 * 159.34463 * 5 4 2 33 33 H 1.09004 * 110.37312 * 281.68139 * 5 4 2 34 34 H 1.09004 * 110.50985 * 217.37328 * 6 5 4 35 35 H 1.09003 * 110.51100 * 94.66117 * 6 5 4 36 36 H 1.09000 * 110.28775 * 79.55217 * 12 11 9 37 37 H 1.09000 * 110.69335 * 317.53838 * 12 11 9 38 38 H 1.09000 * 109.76629 * 213.41911 * 15 13 12 39 39 H 1.09004 * 109.77132 * 334.14852 * 15 13 12 40 40 H 0.96997 * 120.00321 * 180.02562 * 20 19 17 41 41 H 1.09001 * 110.01913 * 137.75438 * 25 16 15 42 42 H 1.09000 * 110.01536 * 259.09699 * 25 16 15 43 43 H 1.08997 * 109.76594 * 59.66052 * 28 11 9 44 44 H 1.09007 * 109.76514 * 298.92429 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 8 2.0328 -0.7249 -1.1435 5 6 3.3874 -1.0880 -0.7983 6 6 3.3178 -1.5050 0.6874 7 6 2.0678 -0.7728 1.2247 8 1 2.3407 -0.0820 2.0225 9 6 1.0444 -1.7648 1.7142 10 8 0.9235 -2.8357 1.1581 11 7 0.2635 -1.4619 2.7701 12 6 0.3121 -0.1863 3.5328 13 6 -0.3839 -0.4766 4.8753 14 1 0.3167 -0.7545 5.6628 15 6 -1.2660 0.7217 5.2595 16 7 -2.6235 0.4593 4.7704 17 6 -3.6985 1.2920 4.9327 18 1 -3.5816 2.2288 5.4573 19 6 -4.9382 0.9325 4.4220 20 7 -5.0806 -0.2089 3.7823 21 14 -6.4044 2.0687 4.6427 22 1 -6.1179 3.3769 4.0012 23 1 -7.6024 1.4592 4.0115 24 1 -6.6587 2.2730 6.0915 25 6 -2.6494 -0.8353 4.0799 26 6 -1.3972 -1.6055 4.5378 27 1 -1.6023 -2.2608 5.3844 28 6 -0.7656 -2.3362 3.3426 29 1 -0.3633 0.4043 0.9448 30 1 -0.3634 0.6160 -0.8225 31 1 -0.3633 -1.0204 -0.1221 32 1 3.7241 -1.9238 -1.4116 33 1 4.0525 -0.2333 -0.9219 34 1 4.2110 -1.1760 1.2186 35 1 3.1955 -2.5845 0.7758 36 1 -0.2246 0.5958 2.9958 37 1 1.3438 0.1200 3.7058 38 1 -1.2804 0.8363 6.3434 39 1 -0.8766 1.6292 4.7981 40 1 -5.9468 -0.4599 3.4251 41 1 -3.5483 -1.3871 4.3550 42 1 -2.6210 -0.6833 3.0009 43 1 -0.3120 -3.2688 3.6781 44 1 -1.5292 -2.5462 2.5936 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049138485.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:58 Heat of formation + Delta-G solvation = -68.744207 kcal Electronic energy + Delta-G solvation = -25269.810930 eV Core-core repulsion = 21800.936608 eV Total energy + Delta-G solvation = -3468.874323 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.90262 -40.52425 -38.96337 -36.55066 -34.21153 -33.54865 -32.52278 -31.66965 -31.14764 -27.92206 -27.03365 -26.95420 -24.75776 -23.09183 -22.70005 -21.90278 -20.71014 -19.87885 -18.86766 -18.51502 -17.41352 -17.27971 -16.72464 -16.52257 -16.44894 -15.78541 -15.64820 -15.45810 -14.88218 -14.66748 -14.12728 -13.95643 -13.65140 -13.50748 -13.45789 -13.30574 -13.16935 -13.08486 -12.85328 -12.73555 -12.61870 -12.29497 -12.04992 -11.98277 -11.94567 -11.86432 -11.82166 -11.52042 -11.26203 -10.94437 -10.70973 -10.62557 -9.68043 -8.86245 -7.78775 -5.19951 1.47235 1.49612 1.53524 1.56126 1.93528 2.50715 2.88502 3.22415 3.33973 3.47210 3.54099 3.61626 3.77423 3.90365 3.96192 4.07328 4.15064 4.26384 4.28094 4.33101 4.34559 4.45385 4.52503 4.53983 4.61340 4.74105 4.82150 4.83897 4.87459 4.89033 4.94276 5.01746 5.09913 5.11484 5.14368 5.26395 5.42105 5.49566 5.63826 5.81979 5.87676 6.28637 6.49420 7.11946 7.12807 7.82446 8.42998 9.25175 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023506 B = 0.004225 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.922660 B = 6625.305822 C = 7033.378405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.092 3.908 3 H 0.115 0.885 4 O -0.399 6.399 5 C 0.043 3.957 6 C -0.137 4.137 7 C -0.138 4.138 8 H 0.138 0.862 9 C 0.535 3.465 10 O -0.586 6.586 11 N -0.611 5.611 12 C 0.111 3.889 13 C -0.094 4.094 14 H 0.131 0.869 15 C 0.139 3.861 16 N -0.623 5.623 17 C -0.238 4.238 18 H 0.086 0.914 19 C -0.066 4.066 20 N -0.951 5.951 21 Si 0.976 3.024 22 H -0.278 1.278 23 H -0.299 1.299 24 H -0.275 1.275 25 C 0.183 3.817 26 C -0.111 4.111 27 H 0.105 0.895 28 C 0.128 3.872 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.119 0.881 38 H 0.034 0.966 39 H 0.037 0.963 40 H 0.244 0.756 41 H 0.051 0.949 42 H -0.020 1.020 43 H 0.073 0.927 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.953 1.589 -1.338 20.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.034 3.966 3 H 0.132 0.868 4 O -0.319 6.319 5 C -0.033 4.033 6 C -0.175 4.175 7 C -0.159 4.159 8 H 0.156 0.844 9 C 0.325 3.675 10 O -0.466 6.466 11 N -0.343 5.343 12 C -0.010 4.010 13 C -0.113 4.113 14 H 0.148 0.852 15 C 0.014 3.986 16 N -0.350 5.350 17 C -0.367 4.367 18 H 0.104 0.896 19 C -0.259 4.259 20 N -0.601 5.601 21 Si 0.805 3.195 22 H -0.204 1.204 23 H -0.226 1.226 24 H -0.201 1.201 25 C 0.057 3.943 26 C -0.131 4.131 27 H 0.123 0.877 28 C 0.005 3.995 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.138 0.862 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.137 0.863 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.069 0.931 42 H -0.002 1.002 43 H 0.092 0.908 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 19.609 0.988 -1.930 19.729 hybrid contribution -1.686 0.159 -0.044 1.694 sum 17.923 1.147 -1.975 18.068 Atomic orbital electron populations 1.21909 0.94783 1.01398 1.03109 1.22973 0.94137 0.96281 0.83220 0.86761 1.89160 1.29112 1.75000 1.38625 1.23621 0.83604 1.01213 0.94902 1.22973 0.96737 1.01068 0.96694 1.22927 0.94796 0.97420 1.00745 0.84398 1.20537 0.81536 0.87553 0.77871 1.90662 1.71290 1.27201 1.57492 1.48874 1.35988 1.18610 1.30871 1.22676 1.02663 0.84934 0.90766 1.22842 0.96430 0.94460 0.97549 0.85153 1.21316 0.84197 0.95907 0.97226 1.44536 1.05450 1.19796 1.65176 1.19428 0.87547 0.99952 1.29740 0.89626 1.25607 1.00476 0.99071 1.00719 1.70137 1.23039 1.23661 1.43232 0.85184 0.78550 0.77982 0.77830 1.20365 1.22558 1.20079 1.21130 0.94947 0.86005 0.92176 1.22992 0.95968 0.97117 0.97004 0.87694 1.21484 0.89774 0.93695 0.94582 0.90987 0.90938 0.94987 0.88754 0.89055 0.86179 0.91689 0.92188 0.86284 0.94774 0.94463 0.94646 0.93123 1.00179 0.90837 0.94436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.59 8.57 71.98 0.62 -3.97 16 2 C 0.09 2.14 3.83 31.10 0.12 2.26 16 3 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 4 O -0.40 -10.84 11.34 -148.98 -1.69 -12.53 16 5 C 0.04 0.77 7.63 72.48 0.55 1.33 16 6 C -0.14 -2.47 6.59 31.61 0.21 -2.26 16 7 C -0.14 -2.94 3.09 -10.52 -0.03 -2.97 16 8 H 0.14 1.91 6.46 -2.39 -0.02 1.90 16 9 C 0.53 16.53 4.78 87.66 0.42 16.95 16 10 O -0.59 -23.33 16.04 -3.02 -0.05 -23.38 16 11 N -0.61 -18.34 3.17 -812.49 -2.57 -20.91 16 12 C 0.11 2.74 5.54 86.28 0.48 3.22 16 13 C -0.09 -2.58 4.04 -9.40 -0.04 -2.62 16 14 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 15 C 0.14 4.90 6.59 86.58 0.57 5.47 16 16 N -0.62 -30.23 3.38 -697.73 -2.36 -32.59 16 17 C -0.24 -12.83 10.25 84.03 0.86 -11.97 16 18 H 0.09 4.36 7.83 -2.91 -0.02 4.33 16 19 C -0.07 -3.70 5.48 84.86 0.47 -3.24 16 20 N -0.95 -56.98 10.16 21.65 0.22 -56.76 16 21 Si 0.98 45.17 29.55 68.60 2.03 47.20 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 23 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 25 C 0.18 8.76 4.91 86.66 0.43 9.18 16 26 C -0.11 -3.84 4.05 -9.41 -0.04 -3.88 16 27 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 28 C 0.13 4.35 6.22 86.57 0.54 4.89 16 29 H 0.07 2.18 6.42 -2.38 -0.02 2.16 16 30 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.03 1.17 7.13 -2.39 -0.02 1.15 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.06 1.53 7.03 -2.39 -0.02 1.52 16 36 H 0.06 1.74 6.43 -2.39 -0.02 1.72 16 37 H 0.12 1.84 6.98 -2.39 -0.02 1.82 16 38 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.04 1.25 7.62 -2.38 -0.02 1.23 16 40 H 0.24 14.43 8.31 -92.71 -0.77 13.65 16 41 H 0.05 2.85 6.19 -2.39 -0.01 2.83 16 42 H -0.02 -1.08 7.61 -2.39 -0.02 -1.10 16 43 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.04 1.52 7.67 -2.38 -0.02 1.50 16 Total: -1.00 -75.03 335.51 1.71 -73.32 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.99 Total: 13.25 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 5.15 Total: 12.40 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -4.71 Total: -110.26 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -1.74 Total: -35.91 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -75.03 1.71 -73.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049138485.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.572 kcal (2) G-P(sol) polarization free energy of solvation -75.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds