Wall clock time and date at job start Tue Mar 31 2020 07:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.67380 * 2 1 4 4 O 1.44415 * 110.65698 * 237.02614 * 2 1 3 5 5 C 1.43738 * 107.00438 * 201.48208 * 4 2 1 6 6 C 1.54102 * 107.29331 * 26.48916 * 5 4 2 7 7 C 1.54818 * 104.18784 * 357.97032 * 6 5 4 8 8 H 1.08998 * 110.90475 * 97.34748 * 7 6 5 9 9 C 1.50696 * 110.90577 * 220.92003 * 7 6 5 10 10 O 1.21285 * 119.99478 * 115.67139 * 9 7 6 11 11 N 1.34770 * 120.00013 * 295.66827 * 9 7 6 12 12 C 1.46772 * 125.34301 * 0.04670 * 11 9 7 13 13 C 1.53961 * 106.62895 * 198.47937 * 12 11 9 14 14 H 1.09006 * 113.61011 * 94.61578 * 13 12 11 15 15 C 1.53930 * 109.25310 * 221.80575 * 13 12 11 16 16 N 1.46749 * 106.75599 * 81.61168 * 15 13 12 17 17 C 1.36932 * 125.33021 * 198.38291 * 16 15 13 18 18 H 1.08004 * 120.00109 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00224 * 180.02562 * 17 16 15 20 20 N 1.31620 * 119.99616 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00238 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47118 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47039 * 119.99464 * 21 19 17 24 24 H 1.48498 * 109.47363 * 240.00005 * 21 19 17 25 25 C 1.46743 * 109.28462 * 18.35955 * 16 15 13 26 26 C 1.53696 * 108.02156 * 359.15056 * 25 16 15 27 27 H 1.08998 * 113.05663 * 106.20179 * 26 25 16 28 28 C 1.46673 * 125.33571 * 179.97438 * 11 9 7 29 29 H 1.09003 * 109.47723 * 297.04252 * 1 2 3 30 30 H 1.09000 * 109.47034 * 57.03549 * 1 2 3 31 31 H 1.09001 * 109.47249 * 177.03740 * 1 2 3 32 32 H 1.08998 * 109.88212 * 267.06888 * 5 4 2 33 33 H 1.08999 * 110.00474 * 145.97931 * 5 4 2 34 34 H 1.09001 * 110.48819 * 239.29274 * 6 5 4 35 35 H 1.09001 * 110.48920 * 116.64563 * 6 5 4 36 36 H 1.09001 * 110.02861 * 79.18348 * 12 11 9 37 37 H 1.09006 * 110.02423 * 317.77044 * 12 11 9 38 38 H 1.09002 * 110.01177 * 200.95080 * 15 13 12 39 39 H 1.08999 * 110.01217 * 322.27704 * 15 13 12 40 40 H 0.96999 * 119.99563 * 180.02562 * 20 19 17 41 41 H 1.08992 * 109.74901 * 239.51039 * 25 16 15 42 42 H 1.08999 * 109.76659 * 118.80191 * 25 16 15 43 43 H 1.08998 * 109.77151 * 59.87404 * 28 11 9 44 44 H 1.08999 * 109.79403 * 299.12289 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 8 2.0394 -0.7355 -1.1336 5 6 3.3845 -1.1262 -0.8111 6 6 3.4794 -1.2174 0.7243 7 6 2.0757 -0.7892 1.2173 8 1 1.4545 -1.6602 1.4264 9 6 2.1795 0.0980 2.4309 10 8 1.8033 1.2497 2.3740 11 7 2.6903 -0.3882 3.5794 12 6 3.1796 -1.7575 3.7784 13 6 3.2180 -1.9951 5.2991 14 1 2.3205 -2.4757 5.6887 15 6 4.5100 -2.7487 5.6626 16 7 5.5782 -1.7453 5.7377 17 6 6.9202 -2.0116 5.6811 18 1 7.2647 -3.0295 5.5731 19 6 7.8380 -0.9734 5.7636 20 7 7.4181 0.2671 5.8957 21 14 9.6687 -1.3367 5.6870 22 1 9.8772 -2.7994 5.5370 23 1 10.2653 -0.6304 4.5250 24 1 10.3188 -0.8693 6.9376 25 6 4.9818 -0.4124 5.8824 26 6 3.4532 -0.5725 5.8789 27 1 3.0079 -0.4405 6.8650 28 6 2.8456 0.3687 4.8262 29 1 -0.3635 0.4672 0.9153 30 1 -0.3633 0.5592 -0.8622 31 1 -0.3634 -1.0263 -0.0531 32 1 4.0865 -0.3795 -1.1821 33 1 3.6073 -2.0968 -1.2544 34 1 4.2408 -0.5343 1.1007 35 1 3.6967 -2.2399 1.0331 36 1 4.1804 -1.8609 3.3590 37 1 2.5014 -2.4685 3.3065 38 1 4.3945 -3.2434 6.6270 39 1 4.7424 -3.4838 4.8921 40 1 8.0594 0.9926 5.9529 41 1 5.2879 0.2205 5.0495 42 1 5.3033 0.0352 6.8228 43 1 1.8725 0.7228 5.1663 44 1 3.5100 1.2171 4.6626 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049138487.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:01 Heat of formation + Delta-G solvation = -52.838924 kcal Electronic energy + Delta-G solvation = -25141.091299 eV Core-core repulsion = 21672.906681 eV Total energy + Delta-G solvation = -3468.184618 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.66516 -39.33615 -37.84330 -34.99917 -32.78299 -32.19129 -31.57539 -30.24404 -29.48515 -26.83037 -25.54679 -25.37266 -23.33739 -21.96296 -21.54004 -20.14434 -19.37581 -19.14147 -17.44861 -16.83062 -16.25233 -16.11240 -15.45200 -15.27576 -14.84598 -14.40398 -14.11153 -13.91254 -13.69896 -13.25624 -13.11913 -12.71080 -12.46028 -12.41186 -12.11086 -12.03222 -11.90774 -11.58606 -11.51940 -11.32102 -11.14646 -10.93684 -10.88368 -10.80251 -10.46654 -10.15595 -10.10784 -9.92443 -9.81740 -9.70069 -9.56202 -8.66863 -8.37336 -6.90271 -5.78680 -3.12740 2.71343 3.13027 3.35149 3.40821 3.43413 3.71767 4.38360 4.43734 4.53824 4.58214 4.77916 4.86408 5.02650 5.08713 5.14585 5.21939 5.29083 5.44785 5.48293 5.52369 5.53863 5.60154 5.63718 5.69275 5.79414 5.86033 5.87248 5.92891 5.97851 6.08030 6.12537 6.23381 6.32315 6.48303 6.51497 6.57054 6.75012 6.79461 7.50106 7.51033 7.71559 7.75565 8.19635 8.27872 9.15278 9.75923 10.39296 11.32828 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018763 B = 0.004559 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.937157 B = 6139.833431 C = 6791.254942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.093 3.907 3 H 0.084 0.916 4 O -0.376 6.376 5 C 0.050 3.950 6 C -0.147 4.147 7 C -0.136 4.136 8 H 0.108 0.892 9 C 0.537 3.463 10 O -0.545 6.545 11 N -0.603 5.603 12 C 0.112 3.888 13 C -0.112 4.112 14 H 0.089 0.911 15 C 0.145 3.855 16 N -0.602 5.602 17 C -0.231 4.231 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.184 3.816 26 C -0.123 4.123 27 H 0.091 0.909 28 C 0.120 3.880 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.020 0.980 39 H 0.037 0.963 40 H 0.252 0.748 41 H 0.051 0.949 42 H 0.045 0.955 43 H 0.059 0.941 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.007 -4.295 -7.721 14.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.035 3.965 3 H 0.102 0.898 4 O -0.296 6.296 5 C -0.027 4.027 6 C -0.185 4.185 7 C -0.158 4.158 8 H 0.126 0.874 9 C 0.325 3.675 10 O -0.424 6.424 11 N -0.336 5.336 12 C -0.011 4.011 13 C -0.132 4.132 14 H 0.108 0.892 15 C 0.019 3.981 16 N -0.329 5.329 17 C -0.359 4.359 18 H 0.097 0.903 19 C -0.202 4.202 20 N -0.567 5.567 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.217 1.217 25 C 0.060 3.940 26 C -0.143 4.143 27 H 0.109 0.891 28 C -0.002 4.002 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.038 0.962 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.132 -3.577 -8.008 14.970 hybrid contribution 1.269 -0.183 0.335 1.325 sum -10.863 -3.760 -7.673 13.821 Atomic orbital electron populations 1.21744 0.92730 1.02522 1.02930 1.22944 0.95444 0.95544 0.82527 0.89815 1.88863 1.27853 1.73871 1.38994 1.23113 0.84631 1.00678 0.94246 1.22958 0.95941 1.03669 0.95894 1.22870 0.98982 0.99616 0.94300 0.87360 1.19780 0.77251 0.87587 0.82850 1.90686 1.49709 1.18220 1.83754 1.48241 1.60859 1.13428 1.11067 1.22139 0.99818 0.82237 0.96919 1.22913 0.99326 0.97247 0.93699 0.89228 1.21160 0.86834 0.92308 0.97817 1.44242 1.01105 1.01189 1.86366 1.19071 0.80012 0.93236 1.43605 0.90307 1.24800 0.98130 0.95345 1.01944 1.69964 1.32345 0.98151 1.56279 0.86061 0.85073 0.77402 0.77306 1.20476 1.21759 1.21700 1.21130 0.83875 0.87650 1.01370 1.23157 1.00633 0.93214 0.97259 0.89096 1.21836 1.00107 0.95151 0.83129 0.90649 0.91736 0.92037 0.92099 0.89520 0.89780 0.89380 0.90122 0.91767 0.96205 0.94440 0.93713 0.93083 0.93727 0.92302 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.66 37.16 0.36 -1.21 16 2 C 0.09 1.20 3.05 -25.68 -0.08 1.12 16 3 H 0.08 1.22 7.47 -51.93 -0.39 0.83 16 4 O -0.38 -4.93 11.23 -35.23 -0.40 -5.33 16 5 C 0.05 0.56 7.70 37.73 0.29 0.85 16 6 C -0.15 -1.75 5.48 -25.20 -0.14 -1.89 16 7 C -0.14 -1.73 2.23 -89.76 -0.20 -1.93 16 8 H 0.11 1.19 7.80 -51.93 -0.41 0.79 16 9 C 0.54 8.55 7.09 -10.99 -0.08 8.47 16 10 O -0.55 -10.26 16.07 5.55 0.09 -10.17 16 11 N -0.60 -9.60 3.31 -172.29 -0.57 -10.17 16 12 C 0.11 1.63 5.00 -3.39 -0.02 1.61 16 13 C -0.11 -1.72 4.17 -88.36 -0.37 -2.08 16 14 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 15 C 0.15 2.70 6.37 -3.42 -0.02 2.68 16 16 N -0.60 -14.33 3.37 -171.85 -0.58 -14.91 16 17 C -0.23 -6.13 10.25 -15.06 -0.15 -6.28 16 18 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 19 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 20 N -0.92 -26.27 10.25 55.49 0.57 -25.70 16 21 Si 0.91 21.52 29.55 -169.99 -5.02 16.49 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.18 4.20 4.76 -3.55 -0.02 4.19 16 26 C -0.12 -2.11 4.02 -88.60 -0.36 -2.47 16 27 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 28 C 0.12 2.02 6.23 -3.57 -0.02 2.00 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.16 7.85 -51.93 -0.41 0.75 16 35 H 0.09 0.93 8.01 -51.93 -0.42 0.51 16 36 H 0.08 1.35 7.48 -51.93 -0.39 0.96 16 37 H 0.06 0.75 7.62 -51.93 -0.40 0.36 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.04 0.67 7.95 -51.93 -0.41 0.25 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.05 1.32 6.51 -51.93 -0.34 0.98 16 42 H 0.04 1.15 7.46 -51.93 -0.39 0.76 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 1.38 7.43 -51.93 -0.39 1.00 16 LS Contribution 341.60 15.07 5.15 5.15 Total: -1.00 -30.79 341.60 -8.94 -39.72 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.28 Total: 0.12 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -0.90 Total: 4.80 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.58 Total: -50.78 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.31 Total: -15.50 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.79 -8.94 -39.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049138487.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.116 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds